Wall clock time and date at job start Tue Mar 31 2020 13:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86807 * 120.00053 * 2 1 4 4 H 1.48497 * 109.46919 * 274.99127 * 3 2 1 5 5 H 1.48500 * 109.46760 * 34.98445 * 3 2 1 6 6 H 1.48500 * 109.47192 * 154.98715 * 3 2 1 7 7 C 1.39924 * 120.00247 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00517 * 151.92711 * 7 2 1 9 9 C 1.41412 * 120.00047 * 331.92882 * 7 2 1 10 10 C 1.40777 * 120.20712 * 337.88012 * 9 7 2 11 11 C 1.37644 * 119.88377 * 179.97438 * 10 9 7 12 12 C 1.38532 * 120.32444 * 359.73787 * 11 10 9 13 13 C 1.39257 * 120.42543 * 0.52101 * 12 11 10 14 14 N 1.39937 * 119.94606 * 179.76303 * 13 12 11 15 15 C 1.34779 * 119.99735 * 321.01372 * 14 13 12 16 16 O 1.21283 * 120.00150 * 354.72575 * 15 14 13 17 17 C 1.50707 * 119.99532 * 174.44669 * 15 14 13 18 18 H 1.09001 * 109.78633 * 40.28116 * 17 15 14 19 19 C 1.53430 * 109.79582 * 279.47958 * 17 15 14 20 20 C 1.52838 * 108.85916 * 177.30547 * 19 17 15 21 21 C 1.50594 * 110.53440 * 51.22965 * 20 19 17 22 22 C 1.38498 * 118.93602 * 159.59229 * 21 20 19 23 23 C 1.38123 * 120.30702 * 179.49572 * 22 21 20 24 24 C 1.38310 * 120.16551 * 0.06371 * 23 22 21 25 25 C 1.38024 * 119.90689 * 0.08624 * 24 23 22 26 26 C 1.38608 * 121.50114 * 339.34171 * 21 20 19 27 27 N 1.39922 * 120.84128 * 0.58172 * 26 21 20 28 28 C 1.38282 * 120.10304 * 359.48058 * 13 12 11 29 29 H 0.96999 * 119.99850 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.06017 * 359.94973 * 10 9 7 31 31 H 1.08004 * 119.83944 * 180.02562 * 11 10 9 32 32 H 1.08000 * 119.78888 * 180.25362 * 12 11 10 33 33 H 0.96996 * 119.99825 * 141.02097 * 14 13 12 34 34 H 1.09004 * 109.57300 * 297.05697 * 19 17 15 35 35 H 1.09002 * 109.57395 * 57.43000 * 19 17 15 36 36 H 1.08995 * 109.25239 * 290.92205 * 20 19 17 37 37 H 1.09002 * 109.14288 * 171.46501 * 20 19 17 38 38 H 1.08008 * 119.84544 * 359.50874 * 22 21 20 39 39 H 1.08002 * 119.91660 * 180.02562 * 23 22 21 40 40 H 1.07991 * 120.04467 * 180.11247 * 24 23 22 41 41 H 1.07997 * 119.98717 * 179.97438 * 25 24 23 42 42 H 0.96993 * 120.54256 * 166.36513 * 27 26 21 43 43 H 1.08001 * 120.16231 * 180.23534 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3843 2.1073 -1.3948 5 1 1.4964 2.6200 0.8028 6 1 3.5886 1.4121 0.5920 7 6 2.0080 -1.2117 -0.0005 8 1 2.9926 -1.2666 -0.4407 9 6 1.4257 -2.3647 0.5752 10 6 0.4021 -2.2380 1.5333 11 6 -0.1603 -3.3647 2.0891 12 6 0.2722 -4.6239 1.7063 13 6 1.2876 -4.7644 0.7637 14 7 1.7201 -6.0412 0.3880 15 6 1.8269 -7.0157 1.3129 16 8 1.6410 -6.7629 2.4845 17 6 2.1712 -8.4208 0.8906 18 1 2.9322 -8.3956 0.1105 19 6 0.9145 -9.1290 0.3680 20 6 1.3002 -10.5264 -0.1163 21 6 2.0821 -11.2558 0.9441 22 6 2.1554 -12.6378 0.8910 23 6 2.8735 -13.3348 1.8431 24 6 3.5238 -12.6562 2.8577 25 6 3.4534 -11.2791 2.9199 26 6 2.7302 -10.5752 1.9629 27 7 2.6682 -9.1799 2.0461 28 6 1.8650 -3.6445 0.1940 29 1 -0.4850 0.8400 0.0004 30 1 0.0589 -1.2585 1.8321 31 1 -0.9459 -3.2667 2.8238 32 1 -0.1780 -5.5021 2.1450 33 1 1.9431 -6.2247 -0.5379 34 1 0.1813 -9.2110 1.1704 35 1 0.4912 -8.5588 -0.4590 36 1 1.9083 -10.4396 -1.0166 37 1 0.3945 -11.0877 -0.3461 38 1 1.6488 -13.1731 0.1014 39 1 2.9268 -14.4125 1.7954 40 1 4.0862 -13.2029 3.6000 41 1 3.9604 -10.7479 3.7118 42 1 2.9485 -8.7213 2.8536 43 1 2.6499 -3.7525 -0.5399 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001218988323.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:03 Heat of formation + Delta-G solvation = -9.874555 kcal Electronic energy + Delta-G solvation = -25493.396099 eV Core-core repulsion = 21887.475143 eV Total energy + Delta-G solvation = -3605.920956 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.74697 -40.55717 -39.08667 -37.05204 -36.22346 -34.97594 -34.24783 -31.86251 -31.78420 -30.38124 -29.92830 -27.22343 -26.51159 -24.43194 -23.33760 -23.24317 -22.79423 -21.49849 -20.50413 -19.49810 -18.91547 -17.74400 -17.62192 -17.17696 -16.73001 -16.49301 -16.41082 -16.09725 -15.50894 -15.20873 -15.12796 -14.73111 -14.58121 -14.37228 -14.26086 -14.11474 -13.91161 -13.52538 -13.35430 -13.28043 -12.83047 -12.79573 -12.52945 -12.33858 -12.21730 -12.01916 -11.92119 -11.63192 -11.59606 -11.18589 -11.04327 -10.86274 -10.66436 -9.56409 -9.49017 -8.84454 -8.75857 -8.34144 -6.34911 0.54873 0.73031 0.79693 0.95610 1.38003 1.45111 1.54186 1.61463 1.92465 2.19281 2.56681 2.66504 2.98542 3.49214 3.68113 3.69459 3.90445 3.99947 4.10115 4.25517 4.36997 4.40211 4.50517 4.60545 4.65533 4.72307 4.74632 4.94117 4.95660 4.98134 5.06538 5.08822 5.13669 5.18728 5.26233 5.28933 5.41423 5.67226 5.68915 5.78533 5.81052 5.97705 6.02322 6.06453 6.23040 6.37180 6.53969 6.64591 6.73032 6.88510 6.94288 7.17404 8.24050 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.034988 B = 0.002235 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.080766 B =12526.363063 C =12580.205086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.046 3.954 3 Si 0.975 3.025 4 H -0.258 1.258 5 H -0.266 1.266 6 H -0.260 1.260 7 C -0.500 4.500 8 H 0.081 0.919 9 C 0.097 3.903 10 C -0.203 4.203 11 C -0.093 4.093 12 C -0.242 4.242 13 C 0.169 3.831 14 N -0.653 5.653 15 C 0.507 3.493 16 O -0.559 6.559 17 C 0.150 3.850 18 H 0.114 0.886 19 C -0.124 4.124 20 C -0.064 4.064 21 C -0.170 4.170 22 C -0.080 4.080 23 C -0.180 4.180 24 C -0.086 4.086 25 C -0.206 4.206 26 C 0.200 3.800 27 N -0.741 5.741 28 C -0.259 4.259 29 H 0.292 0.708 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.422 0.578 34 H 0.056 0.944 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.143 0.857 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.120 0.880 42 H 0.402 0.598 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.258 -20.784 -2.544 21.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.173 4.173 3 Si 0.795 3.205 4 H -0.182 1.182 5 H -0.191 1.191 6 H -0.184 1.184 7 C -0.528 4.528 8 H 0.099 0.901 9 C 0.094 3.906 10 C -0.222 4.222 11 C -0.112 4.112 12 C -0.263 4.263 13 C 0.076 3.924 14 N -0.299 5.299 15 C 0.294 3.706 16 O -0.436 6.436 17 C 0.041 3.959 18 H 0.132 0.868 19 C -0.163 4.163 20 C -0.100 4.100 21 C -0.175 4.175 22 C -0.099 4.099 23 C -0.200 4.200 24 C -0.104 4.104 25 C -0.228 4.228 26 C 0.099 3.901 27 N -0.374 5.374 28 C -0.280 4.280 29 H 0.103 0.897 30 H 0.114 0.886 31 H 0.126 0.874 32 H 0.114 0.886 33 H 0.260 0.740 34 H 0.074 0.926 35 H 0.120 0.880 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.161 0.839 39 H 0.156 0.844 40 H 0.156 0.844 41 H 0.138 0.862 42 H 0.239 0.761 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.831 -20.428 -1.912 20.872 hybrid contribution 0.289 1.258 0.316 1.329 sum 4.120 -19.170 -1.597 19.673 Atomic orbital electron populations 1.69918 1.09358 1.31190 1.32631 1.26755 0.95179 1.04592 0.90747 0.85319 0.79462 0.76119 0.79627 1.18249 1.19085 1.18389 1.19745 1.03326 0.93971 1.35764 0.90107 1.17714 0.90608 0.92517 0.89717 1.21126 1.02934 0.96909 1.01275 1.20751 0.98949 0.92608 0.98927 1.20292 1.03090 0.96229 1.06655 1.17363 0.94061 0.83621 0.97379 1.43309 1.65640 1.08420 1.12502 1.21203 0.76330 0.87472 0.85556 1.90719 1.50083 1.83333 1.19450 1.20966 0.98809 0.86155 0.89995 0.86835 1.21859 0.94975 0.97524 1.01894 1.20327 1.00242 0.93062 0.96411 1.19629 1.03651 0.94632 0.99585 1.21160 0.97632 0.92368 0.98711 1.21189 1.01460 1.00768 0.96563 1.21145 0.97993 0.93038 0.98253 1.20876 1.04763 0.95434 1.01738 1.17823 0.94219 0.82725 0.95360 1.44571 1.72779 1.02967 1.17119 1.20839 1.07379 0.91203 1.08595 0.89729 0.88629 0.87398 0.88562 0.74017 0.92553 0.88023 0.88828 0.88579 0.83947 0.84353 0.84396 0.86202 0.76125 0.87159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.35 11.48 21.82 0.25 -41.10 16 2 C 0.05 2.25 4.90 85.25 0.42 2.66 16 3 Si 0.97 37.14 29.64 68.60 2.03 39.17 16 4 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 5 H -0.27 -9.73 7.11 99.48 0.71 -9.02 16 6 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 7 C -0.50 -26.42 8.99 23.46 0.21 -26.21 16 8 H 0.08 4.09 7.98 -2.91 -0.02 4.07 16 9 C 0.10 5.24 5.57 -21.31 -0.12 5.12 16 10 C -0.20 -10.87 8.75 22.75 0.20 -10.67 16 11 C -0.09 -4.61 10.02 22.20 0.22 -4.39 16 12 C -0.24 -11.45 8.66 22.59 0.20 -11.25 16 13 C 0.17 7.42 6.15 38.10 0.23 7.65 16 14 N -0.65 -21.37 5.32 -303.64 -1.62 -22.98 16 15 C 0.51 16.35 6.79 87.66 0.59 16.94 16 16 O -0.56 -23.15 14.14 -3.04 -0.04 -23.19 16 17 C 0.15 3.46 3.32 44.31 0.15 3.61 16 18 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 19 C -0.12 -2.40 5.40 30.68 0.17 -2.24 16 20 C -0.06 -0.97 5.77 29.76 0.17 -0.80 16 21 C -0.17 -3.34 5.76 -19.75 -0.11 -3.45 16 22 C -0.08 -1.32 9.66 22.30 0.22 -1.10 16 23 C -0.18 -2.89 10.04 22.26 0.22 -2.66 16 24 C -0.09 -1.52 10.05 22.24 0.22 -1.29 16 25 C -0.21 -4.42 9.88 22.42 0.22 -4.20 16 26 C 0.20 4.65 6.48 38.14 0.25 4.89 16 27 N -0.74 -18.62 5.45 -320.85 -1.75 -20.37 16 28 C -0.26 -12.38 9.71 22.85 0.22 -12.16 16 29 H 0.29 13.39 8.30 -92.71 -0.77 12.62 16 30 H 0.10 5.28 6.38 -2.91 -0.02 5.26 16 31 H 0.11 4.79 8.06 -2.91 -0.02 4.76 16 32 H 0.10 4.49 6.82 -2.91 -0.02 4.47 16 33 H 0.42 10.27 8.83 -92.71 -0.82 9.45 16 34 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.10 1.18 8.12 -2.39 -0.02 1.16 16 38 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 39 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 40 H 0.14 1.79 8.06 -2.92 -0.02 1.77 16 41 H 0.12 2.43 8.06 -2.91 -0.02 2.40 16 42 H 0.40 11.10 7.97 -92.71 -0.74 10.36 16 43 H 0.11 4.81 8.06 -2.91 -0.02 4.78 16 Total: -1.00 -66.62 358.56 2.05 -64.57 By element: Atomic # 1 Polarization: 43.96 SS G_CDS: -0.51 Total: 43.46 kcal Atomic # 6 Polarization: -43.23 SS G_CDS: 3.68 Total: -39.55 kcal Atomic # 7 Polarization: -81.34 SS G_CDS: -3.11 Total: -84.46 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.04 Total: -23.19 kcal Atomic # 14 Polarization: 37.14 SS G_CDS: 2.03 Total: 39.17 kcal Total: -66.62 2.05 -64.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218988323.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.692 kcal (2) G-P(sol) polarization free energy of solvation -66.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds