Wall clock time and date at job start Tue Mar 31 2020 13:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86798 * 120.00018 * 2 1 4 4 H 1.48492 * 109.47310 * 240.00119 * 3 2 1 5 5 H 1.48506 * 109.46988 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47013 * 119.99764 * 3 2 1 7 7 C 1.39932 * 119.99794 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99828 * 195.37563 * 7 2 1 9 9 C 1.41408 * 120.00557 * 15.37781 * 7 2 1 10 10 C 1.40776 * 120.21475 * 204.63679 * 9 7 2 11 11 C 1.37637 * 119.88705 * 179.97438 * 10 9 7 12 12 C 1.38526 * 120.32352 * 359.97438 * 11 10 9 13 13 C 1.39254 * 120.43051 * 359.76155 * 12 11 10 14 14 N 1.39931 * 119.95402 * 180.26089 * 13 12 11 15 15 C 1.34779 * 119.99513 * 35.85081 * 14 13 12 16 16 O 1.21284 * 120.00450 * 355.48016 * 15 14 13 17 17 C 1.50701 * 119.99804 * 175.48313 * 15 14 13 18 18 H 1.09003 * 109.78890 * 320.79851 * 17 15 14 19 19 C 1.53434 * 109.79903 * 81.65370 * 17 15 14 20 20 C 1.52843 * 108.84197 * 182.79473 * 19 17 15 21 21 C 1.50600 * 110.48352 * 308.65595 * 20 19 17 22 22 C 1.38497 * 118.92857 * 200.48745 * 21 20 19 23 23 C 1.38123 * 120.30963 * 180.23267 * 22 21 20 24 24 C 1.38315 * 120.15487 * 359.97349 * 23 22 21 25 25 C 1.38018 * 119.91572 * 359.94585 * 24 23 22 26 26 C 1.38611 * 121.50031 * 20.57963 * 21 20 19 27 27 N 1.39915 * 120.84221 * 359.67357 * 26 21 20 28 28 C 1.38291 * 120.10115 * 0.51896 * 13 12 11 29 29 H 0.97000 * 120.00149 * 359.97438 * 1 2 3 30 30 H 1.07999 * 120.05469 * 359.94856 * 10 9 7 31 31 H 1.07995 * 119.83985 * 179.97438 * 11 10 9 32 32 H 1.07995 * 119.78862 * 180.02562 * 12 11 10 33 33 H 0.96998 * 120.00514 * 215.84572 * 14 13 12 34 34 H 1.09008 * 109.57558 * 302.60606 * 19 17 15 35 35 H 1.09004 * 109.57636 * 62.98727 * 19 17 15 36 36 H 1.09005 * 109.30174 * 188.35257 * 20 19 17 37 37 H 1.09001 * 109.30885 * 68.96976 * 20 19 17 38 38 H 1.07997 * 119.84600 * 0.20292 * 22 21 20 39 39 H 1.07997 * 119.92565 * 179.97438 * 23 22 21 40 40 H 1.08005 * 120.04151 * 179.97438 * 24 23 22 41 41 H 1.07999 * 119.98619 * 180.02562 * 25 24 23 42 42 H 0.97004 * 120.53268 * 193.39917 * 27 26 21 43 43 H 1.07993 * 120.15938 * 179.74334 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0960 1.6964 -1.2124 5 1 1.2772 2.7465 0.0006 6 1 3.0960 1.6964 1.2126 7 6 2.0079 -1.2119 0.0005 8 1 3.0589 -1.2285 0.2486 9 6 1.3389 -2.4148 -0.3237 10 6 1.8278 -3.6471 0.1498 11 6 1.1710 -4.8138 -0.1694 12 6 0.0301 -4.7818 -0.9544 13 6 -0.4683 -3.5698 -1.4254 14 7 -1.6246 -3.5486 -2.2131 15 6 -2.6238 -4.4190 -1.9667 16 8 -2.4879 -5.2736 -1.1170 17 6 -3.9098 -4.3304 -2.7473 18 1 -4.1783 -3.2848 -2.8987 19 6 -3.7432 -5.0269 -4.1042 20 6 -5.0350 -4.8638 -4.9047 21 6 -6.2223 -5.2890 -4.0816 22 6 -7.4000 -5.6252 -4.7283 23 6 -8.5079 -6.0145 -4.0011 24 6 -8.4479 -6.0717 -2.6205 25 6 -7.2778 -5.7399 -1.9680 26 6 -6.1606 -5.3483 -2.6981 27 7 -4.9831 -5.0192 -2.0179 28 6 0.1808 -2.3874 -1.1202 29 1 -0.4850 0.8400 0.0004 30 1 2.7169 -3.6770 0.7621 31 1 1.5469 -5.7587 0.1939 32 1 -0.4787 -5.7024 -1.1993 33 1 -1.7072 -2.9075 -2.9363 34 1 -2.9159 -4.5720 -4.6492 35 1 -3.5415 -6.0867 -3.9484 36 1 -4.9817 -5.4776 -5.8039 37 1 -5.1515 -3.8188 -5.1920 38 1 -7.4525 -5.5823 -5.8061 39 1 -9.4232 -6.2750 -4.5117 40 1 -9.3155 -6.3759 -2.0537 41 1 -7.2295 -5.7845 -0.8900 42 1 -4.8770 -5.2425 -1.0798 43 1 -0.2025 -1.4473 -1.4884 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001218988327.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:18:06 Heat of formation + Delta-G solvation = -7.792516 kcal Electronic energy + Delta-G solvation = -25756.558324 eV Core-core repulsion = 22150.727652 eV Total energy + Delta-G solvation = -3605.830672 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.75706 -40.56949 -39.07302 -37.05082 -36.06876 -35.15876 -34.26085 -31.92142 -31.41985 -30.38903 -30.04827 -27.22289 -26.51193 -24.43192 -23.33263 -23.21476 -22.86298 -21.42380 -20.51326 -19.30477 -19.00830 -17.93448 -17.59761 -17.14120 -16.61581 -16.46014 -16.41284 -16.09434 -15.53252 -15.18298 -15.08476 -14.69019 -14.55729 -14.37802 -14.31086 -14.13868 -13.91433 -13.59398 -13.34830 -12.99076 -12.84200 -12.77619 -12.58760 -12.26140 -12.19752 -12.00895 -11.84876 -11.76168 -11.63182 -11.24589 -11.03148 -10.87560 -10.61525 -9.57087 -9.34265 -8.85255 -8.59875 -8.34950 -6.37503 0.54218 0.72518 0.78324 1.02707 1.40493 1.46992 1.51570 1.58783 1.96724 2.21964 2.55153 2.74352 2.97976 3.48996 3.66777 3.71402 3.90108 3.99539 4.09346 4.25211 4.37091 4.44395 4.50139 4.64656 4.71139 4.73071 4.74567 4.82288 4.93775 5.05565 5.09132 5.13575 5.14276 5.19272 5.25594 5.35167 5.40906 5.66553 5.74175 5.77691 5.82529 5.97891 6.02342 6.08051 6.28972 6.36984 6.51962 6.68062 6.72703 6.92756 6.95451 7.16732 8.33460 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.020180 B = 0.002665 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.179450 B =10505.900933 C =11107.886001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.036 3.964 3 Si 0.983 3.017 4 H -0.258 1.258 5 H -0.268 1.268 6 H -0.263 1.263 7 C -0.495 4.495 8 H 0.077 0.923 9 C 0.089 3.911 10 C -0.245 4.245 11 C -0.088 4.088 12 C -0.239 4.239 13 C 0.147 3.853 14 N -0.650 5.650 15 C 0.506 3.494 16 O -0.557 6.557 17 C 0.149 3.851 18 H 0.107 0.893 19 C -0.122 4.122 20 C -0.064 4.064 21 C -0.171 4.171 22 C -0.079 4.079 23 C -0.180 4.180 24 C -0.085 4.085 25 C -0.207 4.207 26 C 0.200 3.800 27 N -0.741 5.741 28 C -0.200 4.200 29 H 0.288 0.712 30 H 0.101 0.899 31 H 0.117 0.883 32 H 0.105 0.895 33 H 0.419 0.581 34 H 0.102 0.898 35 H 0.059 0.941 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.144 0.856 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.119 0.881 42 H 0.402 0.598 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.443 -4.722 -12.034 19.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.178 4.178 3 Si 0.804 3.196 4 H -0.182 1.182 5 H -0.192 1.192 6 H -0.188 1.188 7 C -0.525 4.525 8 H 0.096 0.904 9 C 0.086 3.914 10 C -0.265 4.265 11 C -0.107 4.107 12 C -0.260 4.260 13 C 0.054 3.946 14 N -0.295 5.295 15 C 0.294 3.706 16 O -0.435 6.435 17 C 0.040 3.960 18 H 0.125 0.875 19 C -0.161 4.161 20 C -0.101 4.101 21 C -0.176 4.176 22 C -0.098 4.098 23 C -0.200 4.200 24 C -0.104 4.104 25 C -0.229 4.229 26 C 0.098 3.902 27 N -0.374 5.374 28 C -0.221 4.221 29 H 0.099 0.901 30 H 0.119 0.881 31 H 0.135 0.865 32 H 0.123 0.877 33 H 0.256 0.744 34 H 0.121 0.879 35 H 0.078 0.922 36 H 0.117 0.883 37 H 0.109 0.891 38 H 0.162 0.838 39 H 0.158 0.842 40 H 0.156 0.844 41 H 0.137 0.863 42 H 0.238 0.762 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.469 -5.075 -11.541 19.192 hybrid contribution 0.559 0.741 0.799 1.225 sum -13.910 -4.334 -10.742 18.102 Atomic orbital electron populations 1.69854 1.08852 1.30495 1.35900 1.26735 0.95548 1.04390 0.91167 0.85231 0.78725 0.75590 0.80028 1.18232 1.19246 1.18767 1.19780 0.97543 0.91882 1.43248 0.90446 1.17790 0.91668 0.93095 0.88871 1.21220 1.04087 0.93121 1.08089 1.20747 0.95037 0.97402 0.97524 1.20588 1.00101 0.95897 1.09382 1.17658 0.87344 0.93861 0.95717 1.43268 1.15453 1.36672 1.34131 1.21169 0.85602 0.80609 0.83230 1.90684 1.81703 1.35983 1.35127 1.20961 0.83888 0.98899 0.92293 0.87516 1.21861 1.00304 1.00888 0.93040 1.20332 0.89269 1.03140 0.97337 1.19639 0.97902 1.08731 0.91289 1.21163 0.91466 0.96481 1.00679 1.21195 0.99711 1.05041 0.94016 1.21146 0.96914 0.97159 0.95175 1.20875 0.93183 1.09089 0.99790 1.17844 0.85802 0.94831 0.91697 1.44569 1.13978 1.66041 1.12780 1.21107 1.01094 0.95330 1.04599 0.90149 0.88096 0.86456 0.87653 0.74381 0.87915 0.92168 0.88298 0.89089 0.83822 0.84246 0.84369 0.86336 0.76227 0.86261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.79 10.82 21.82 0.24 -41.55 16 2 C 0.04 1.78 5.19 85.25 0.44 2.22 16 3 Si 0.98 37.04 29.59 68.60 2.03 39.07 16 4 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 5 H -0.27 -9.54 7.11 99.48 0.71 -8.83 16 6 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 7 C -0.50 -26.22 9.06 23.46 0.21 -26.01 16 8 H 0.08 3.95 7.89 -2.91 -0.02 3.92 16 9 C 0.09 4.78 5.58 -21.31 -0.12 4.66 16 10 C -0.25 -12.34 9.79 22.75 0.22 -12.12 16 11 C -0.09 -4.14 10.02 22.20 0.22 -3.92 16 12 C -0.24 -11.33 8.70 22.58 0.20 -11.13 16 13 C 0.15 6.80 6.27 38.10 0.24 7.04 16 14 N -0.65 -23.28 5.33 -303.64 -1.62 -24.90 16 15 C 0.51 17.53 6.92 87.66 0.61 18.13 16 16 O -0.56 -23.90 13.56 -3.04 -0.04 -23.94 16 17 C 0.15 3.78 3.32 44.31 0.15 3.93 16 18 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 19 C -0.12 -2.48 5.40 30.69 0.17 -2.31 16 20 C -0.06 -1.04 5.78 29.76 0.17 -0.87 16 21 C -0.17 -3.55 5.76 -19.74 -0.11 -3.67 16 22 C -0.08 -1.37 9.66 22.30 0.22 -1.16 16 23 C -0.18 -3.04 10.04 22.26 0.22 -2.82 16 24 C -0.09 -1.61 10.05 22.24 0.22 -1.39 16 25 C -0.21 -4.76 9.88 22.42 0.22 -4.54 16 26 C 0.20 4.95 6.48 38.14 0.25 5.20 16 27 N -0.74 -20.17 5.44 -320.85 -1.75 -21.91 16 28 C -0.20 -10.18 8.61 22.85 0.20 -9.98 16 29 H 0.29 13.19 8.30 -92.71 -0.77 12.42 16 30 H 0.10 4.76 8.06 -2.91 -0.02 4.73 16 31 H 0.12 4.75 8.06 -2.91 -0.02 4.73 16 32 H 0.11 4.97 6.27 -2.91 -0.02 4.95 16 33 H 0.42 11.83 8.82 -92.71 -0.82 11.01 16 34 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 35 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.10 1.24 8.12 -2.38 -0.02 1.22 16 37 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.14 1.68 8.06 -2.91 -0.02 1.65 16 39 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 40 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 41 H 0.12 2.61 8.06 -2.91 -0.02 2.58 16 42 H 0.40 12.01 7.99 -92.71 -0.74 11.27 16 43 H 0.12 6.14 6.07 -2.91 -0.02 6.12 16 Total: -1.00 -65.85 356.92 2.08 -63.77 By element: Atomic # 1 Polarization: 48.68 SS G_CDS: -0.50 Total: 48.18 kcal Atomic # 6 Polarization: -42.44 SS G_CDS: 3.72 Total: -38.72 kcal Atomic # 7 Polarization: -85.24 SS G_CDS: -3.13 Total: -88.36 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.04 Total: -23.94 kcal Atomic # 14 Polarization: 37.04 SS G_CDS: 2.03 Total: 39.07 kcal Total: -65.85 2.08 -63.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001218988327.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.982 kcal (2) G-P(sol) polarization free energy of solvation -65.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds