Wall clock time and date at job start Tue Mar 31 2020 13:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86793 * 120.00503 * 2 1 4 4 H 1.48503 * 109.47225 * 274.99288 * 3 2 1 5 5 H 1.48503 * 109.47274 * 34.98816 * 3 2 1 6 6 H 1.48496 * 109.47233 * 154.98818 * 3 2 1 7 7 C 1.38813 * 119.99719 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00197 * 187.05848 * 7 2 1 9 9 N 1.36940 * 120.00183 * 7.05693 * 7 2 1 10 10 C 1.47469 * 125.63138 * 174.79408 * 9 7 2 11 11 C 1.54909 * 104.80940 * 204.14623 * 10 9 7 12 12 H 1.09006 * 111.00754 * 81.13768 * 11 10 9 13 13 N 1.46503 * 111.00547 * 204.94927 * 11 10 9 14 14 C 1.34777 * 119.99704 * 270.42135 * 13 11 10 15 15 O 1.21283 * 120.00321 * 359.97438 * 14 13 11 16 16 C 1.50703 * 119.99648 * 179.97438 * 14 13 11 17 17 H 1.08999 * 109.47155 * 15.00484 * 16 14 13 18 18 F 1.39892 * 109.47466 * 254.99974 * 16 14 13 19 19 C 1.53002 * 109.46942 * 135.00065 * 16 14 13 20 20 C 1.50697 * 109.47394 * 185.00341 * 19 16 14 21 21 C 1.38235 * 120.00006 * 89.99884 * 20 19 16 22 22 C 1.38235 * 119.99870 * 179.97438 * 21 20 19 23 23 C 1.38238 * 120.00014 * 0.02562 * 22 21 20 24 24 C 1.38241 * 119.99843 * 0.25367 * 23 22 21 25 25 C 1.38229 * 119.99904 * 359.46872 * 24 23 22 26 26 C 1.55150 * 101.62038 * 323.04265 * 11 10 9 27 27 H 1.09000 * 110.72331 * 154.02270 * 26 11 10 28 28 O 1.42905 * 110.72253 * 277.12204 * 26 11 10 29 29 C 1.47027 * 125.64681 * 354.88513 * 9 7 2 30 30 H 0.97006 * 119.99733 * 359.97438 * 1 2 3 31 31 H 1.08993 * 110.34644 * 85.32726 * 10 9 7 32 32 H 1.08998 * 110.40110 * 322.98640 * 10 9 7 33 33 H 0.96997 * 120.00019 * 90.41184 * 13 11 10 34 34 H 1.09000 * 109.47323 * 64.99549 * 19 16 14 35 35 H 1.09006 * 109.47031 * 305.00343 * 19 16 14 36 36 H 1.07993 * 120.00259 * 359.97438 * 21 20 19 37 37 H 1.08001 * 120.00142 * 179.97438 * 22 21 20 38 38 H 1.07997 * 120.00337 * 179.97438 * 23 22 21 39 39 H 1.08000 * 119.99395 * 179.72642 * 24 23 22 40 40 H 1.08000 * 120.00072 * 180.29813 * 25 24 23 41 41 H 0.96694 * 114.00444 * 179.97438 * 28 26 11 42 42 H 1.09004 * 109.88443 * 59.47721 * 29 9 7 43 43 H 1.09002 * 110.00643 * 298.39021 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5045 2.6199 0.8028 6 1 3.5966 1.4118 0.5919 7 6 2.0102 -1.2022 -0.0005 8 1 3.0841 -1.2059 0.1144 9 7 1.3333 -2.3836 -0.1468 10 6 1.9500 -3.7171 -0.2734 11 6 0.8917 -4.5743 -1.0117 12 1 0.9275 -4.3985 -2.0869 13 7 1.0645 -5.9973 -0.7091 14 6 1.8723 -6.7560 -1.4761 15 8 2.4558 -6.2609 -2.4170 16 6 2.0505 -8.2197 -1.1645 17 1 1.2687 -8.5426 -0.4771 18 9 3.3028 -8.4219 -0.5747 19 6 1.9590 -9.0313 -2.4583 20 6 2.0140 -10.5019 -2.1337 21 6 0.8464 -11.1992 -1.8862 22 6 0.8968 -12.5483 -1.5891 23 6 2.1150 -13.1999 -1.5389 24 6 3.2831 -12.5013 -1.7807 25 6 3.2322 -11.1535 -2.0835 26 6 -0.4288 -4.0327 -0.4033 27 1 -1.2589 -4.1746 -1.0953 28 8 -0.7041 -4.6627 0.8495 29 6 -0.1283 -2.5320 -0.2054 30 1 -0.4850 0.8401 0.0004 31 1 2.1558 -4.1345 0.7122 32 1 2.8665 -3.6577 -0.8602 33 1 0.5976 -6.3933 0.0432 34 1 2.7933 -8.7715 -3.1099 35 1 1.0197 -8.8055 -2.9632 36 1 -0.1052 -10.6901 -1.9250 37 1 -0.0153 -13.0931 -1.3953 38 1 2.1545 -14.2538 -1.3063 39 1 4.2350 -13.0095 -1.7371 40 1 4.1444 -10.6087 -2.2772 41 1 -1.5191 -4.3589 1.2719 42 1 -0.5257 -1.9606 -1.0443 43 1 -0.5761 -2.1838 0.7254 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221055455.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:55 Heat of formation + Delta-G solvation = -104.596588 kcal Electronic energy + Delta-G solvation = -26774.263111 eV Core-core repulsion = 22733.465475 eV Total energy + Delta-G solvation = -4040.797636 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -48.95732 -41.09191 -40.08630 -39.41905 -36.47363 -35.56480 -34.71825 -33.63634 -31.73977 -30.89212 -29.99554 -28.75165 -26.67240 -25.43355 -23.43234 -22.59312 -22.13243 -21.68109 -21.50304 -19.40376 -18.78462 -18.39082 -17.65216 -17.60076 -16.93166 -16.84854 -16.40316 -16.11008 -15.82908 -15.77326 -15.61452 -15.34338 -14.80030 -14.62891 -14.39315 -14.23835 -14.05520 -13.97873 -13.69044 -13.58704 -13.21848 -12.96728 -12.84877 -12.79809 -12.34238 -12.31069 -12.12143 -11.98781 -11.93841 -11.90967 -11.82195 -10.98945 -10.85217 -10.76611 -10.22137 -9.78250 -9.62633 -8.97192 -7.92375 -5.26844 0.41069 0.54072 1.26374 1.44172 1.46144 1.54775 1.82829 2.46132 2.87375 3.10042 3.27380 3.31633 3.55235 3.61810 3.67680 3.81290 3.84504 3.92135 3.98853 4.14892 4.20901 4.23890 4.34845 4.46060 4.57166 4.64330 4.66188 4.79126 4.83245 4.86720 4.95425 5.15016 5.21177 5.31056 5.38246 5.45769 5.60115 5.63457 5.66569 5.71409 6.12458 6.14871 6.38699 6.85520 7.04411 7.05038 7.68148 8.31863 9.17955 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.031051 B = 0.002410 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.519420 B =11613.422761 C =12141.654104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.058 4.058 3 Si 0.978 3.022 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.272 1.272 7 C -0.249 4.249 8 H 0.074 0.926 9 N -0.622 5.622 10 C 0.130 3.870 11 C 0.149 3.851 12 H 0.096 0.904 13 N -0.684 5.684 14 C 0.488 3.512 15 O -0.564 6.564 16 C 0.098 3.902 17 H 0.136 0.864 18 F -0.200 7.200 19 C -0.091 4.091 20 C -0.100 4.100 21 C -0.119 4.119 22 C -0.126 4.126 23 C -0.126 4.126 24 C -0.130 4.130 25 C -0.124 4.124 26 C 0.095 3.905 27 H 0.098 0.902 28 O -0.565 6.565 29 C 0.157 3.843 30 H 0.250 0.750 31 H 0.023 0.977 32 H 0.027 0.973 33 H 0.423 0.577 34 H 0.080 0.920 35 H 0.110 0.890 36 H 0.143 0.857 37 H 0.145 0.855 38 H 0.142 0.858 39 H 0.135 0.865 40 H 0.117 0.883 41 H 0.400 0.600 42 H 0.028 0.972 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.344 -26.582 -2.095 26.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.252 4.252 3 Si 0.806 3.194 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.197 1.197 7 C -0.378 4.378 8 H 0.092 0.908 9 N -0.349 5.349 10 C 0.003 3.997 11 C 0.042 3.958 12 H 0.114 0.886 13 N -0.336 5.336 14 C 0.272 3.728 15 O -0.442 6.442 16 C 0.059 3.941 17 H 0.154 0.846 18 F -0.181 7.181 19 C -0.129 4.129 20 C -0.100 4.100 21 C -0.136 4.136 22 C -0.143 4.143 23 C -0.144 4.144 24 C -0.148 4.148 25 C -0.142 4.142 26 C 0.035 3.965 27 H 0.115 0.885 28 O -0.374 6.374 29 C 0.032 3.968 30 H 0.060 0.940 31 H 0.041 0.959 32 H 0.045 0.955 33 H 0.261 0.739 34 H 0.099 0.901 35 H 0.129 0.871 36 H 0.161 0.839 37 H 0.163 0.837 38 H 0.160 0.840 39 H 0.153 0.847 40 H 0.135 0.865 41 H 0.251 0.749 42 H 0.046 0.954 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -2.402 -26.324 -2.842 26.586 hybrid contribution 0.120 1.640 0.525 1.726 sum -2.283 -24.685 -2.317 24.898 Atomic orbital electron populations 1.70110 1.05997 1.25599 1.57601 1.25609 0.96762 1.00746 1.02055 0.85069 0.77775 0.79135 0.77403 1.21276 1.21546 1.19727 1.19385 0.91495 0.83856 1.43024 0.90765 1.44568 1.02632 1.01535 1.86123 1.21890 0.95221 0.85850 0.96732 1.22023 0.94542 0.79936 0.99281 0.88559 1.45685 1.46787 1.08630 1.32542 1.21540 0.78959 0.89804 0.82452 1.90736 1.47432 1.75077 1.30967 1.21675 0.84141 0.90347 0.97962 0.84620 1.92867 1.44313 1.95437 1.85508 1.20981 1.05998 0.90890 0.95025 1.19721 0.94229 0.94432 1.01611 1.21355 0.98051 0.95013 0.99217 1.21485 0.98870 0.94619 0.99359 1.21519 0.92500 1.01040 0.99353 1.21408 0.99607 0.94123 0.99657 1.21264 0.97576 0.95425 0.99915 1.23128 0.95734 0.91356 0.86320 0.88460 1.86201 1.49329 1.66426 1.35404 1.21759 0.84052 0.91811 0.99197 0.94019 0.95885 0.95490 0.73869 0.90127 0.87117 0.83887 0.83720 0.84049 0.84679 0.86498 0.74899 0.95411 0.95620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.44 10.36 21.65 0.22 -55.21 16 2 C -0.06 -3.32 5.48 84.86 0.46 -2.86 16 3 Si 0.98 46.18 29.56 68.60 2.03 48.20 16 4 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 5 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 6 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.25 -14.38 10.26 84.03 0.86 -13.52 16 8 H 0.07 4.23 7.84 -2.91 -0.02 4.20 16 9 N -0.62 -32.69 3.40 -691.86 -2.35 -35.04 16 10 C 0.13 5.82 6.92 86.85 0.60 6.42 16 11 C 0.15 5.28 3.25 46.38 0.15 5.43 16 12 H 0.10 3.66 7.63 -2.38 -0.02 3.65 16 13 N -0.68 -18.95 5.18 -435.95 -2.26 -21.20 16 14 C 0.49 14.02 7.17 87.66 0.63 14.65 16 15 O -0.56 -21.19 16.30 -3.04 -0.05 -21.24 16 16 C 0.10 2.07 3.76 29.85 0.11 2.18 16 17 H 0.14 1.89 7.99 -2.39 -0.02 1.87 16 18 F -0.20 -5.32 16.75 44.97 0.75 -4.57 16 19 C -0.09 -1.72 4.82 29.85 0.14 -1.57 16 20 C -0.10 -1.75 5.00 -19.87 -0.10 -1.85 16 21 C -0.12 -1.65 9.70 22.27 0.22 -1.43 16 22 C -0.13 -1.56 10.05 22.27 0.22 -1.33 16 23 C -0.13 -1.64 10.05 22.27 0.22 -1.41 16 24 C -0.13 -2.00 10.05 22.27 0.22 -1.77 16 25 C -0.12 -2.29 9.55 22.27 0.21 -2.08 16 26 C 0.09 3.12 4.20 31.78 0.13 3.26 16 27 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 28 O -0.56 -15.57 12.14 -148.98 -1.81 -17.38 16 29 C 0.16 7.34 5.15 86.73 0.45 7.78 16 30 H 0.25 14.21 8.31 -92.70 -0.77 13.44 16 31 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.42 9.46 7.46 -92.71 -0.69 8.77 16 34 H 0.08 1.81 7.99 -2.39 -0.02 1.79 16 35 H 0.11 1.70 8.09 -2.38 -0.02 1.68 16 36 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 37 H 0.15 1.08 8.06 -2.91 -0.02 1.05 16 38 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 39 H 0.14 1.58 8.06 -2.91 -0.02 1.55 16 40 H 0.12 2.22 8.06 -2.91 -0.02 2.19 16 41 H 0.40 8.04 9.12 -74.06 -0.68 7.36 16 42 H 0.03 1.44 7.30 -2.38 -0.02 1.43 16 43 H 0.03 1.32 7.54 -2.39 -0.02 1.30 16 Total: -1.00 -74.74 364.39 0.76 -73.98 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: -0.33 Total: 20.57 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: 4.54 Total: 11.89 kcal Atomic # 7 Polarization: -107.08 SS G_CDS: -4.38 Total: -111.46 kcal Atomic # 8 Polarization: -36.77 SS G_CDS: -1.86 Total: -38.62 kcal Atomic # 9 Polarization: -5.32 SS G_CDS: 0.75 Total: -4.57 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.20 kcal Total: -74.74 0.76 -73.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221055455.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.613 kcal (2) G-P(sol) polarization free energy of solvation -74.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds