Wall clock time and date at job start Tue Mar 31 2020 13:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 119.99973 * 2 1 4 4 H 1.48499 * 109.47330 * 239.99668 * 3 2 1 5 5 H 1.48507 * 109.47188 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47075 * 119.99601 * 3 2 1 7 7 C 1.38807 * 119.99990 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99963 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00383 * 0.02562 * 7 2 1 10 10 C 1.47468 * 125.63075 * 179.97438 * 9 7 2 11 11 C 1.54913 * 104.80753 * 204.05121 * 10 9 7 12 12 H 1.08996 * 111.00474 * 81.13713 * 11 10 9 13 13 N 1.46505 * 111.00138 * 204.94989 * 11 10 9 14 14 C 1.34773 * 119.99694 * 270.41683 * 13 11 10 15 15 O 1.21279 * 120.00411 * 0.02562 * 14 13 11 16 16 C 1.50706 * 119.99865 * 179.97438 * 14 13 11 17 17 H 1.09002 * 109.46950 * 344.99852 * 16 14 13 18 18 F 1.39900 * 109.46710 * 104.99920 * 16 14 13 19 19 C 1.52999 * 109.47154 * 224.99997 * 16 14 13 20 20 C 1.50700 * 109.46924 * 175.00101 * 19 16 14 21 21 C 1.38234 * 120.00260 * 90.00031 * 20 19 16 22 22 C 1.38234 * 120.00240 * 179.97438 * 21 20 19 23 23 C 1.38233 * 120.00037 * 0.26327 * 22 21 20 24 24 C 1.38239 * 119.99756 * 359.45918 * 23 22 21 25 25 C 1.38234 * 119.99992 * 0.53603 * 24 23 22 26 26 C 1.55152 * 101.61628 * 323.03942 * 11 10 9 27 27 H 1.09001 * 110.72206 * 154.02509 * 26 11 10 28 28 O 1.42902 * 110.72451 * 277.12278 * 26 11 10 29 29 C 1.47025 * 125.64500 * 359.97418 * 9 7 2 30 30 H 0.96993 * 119.99971 * 0.02562 * 1 2 3 31 31 H 1.08990 * 110.35127 * 85.23294 * 10 9 7 32 32 H 1.08999 * 110.40457 * 322.89428 * 10 9 7 33 33 H 0.97003 * 119.99938 * 90.41416 * 13 11 10 34 34 H 1.08999 * 109.47332 * 54.99949 * 19 16 14 35 35 H 1.08999 * 109.47492 * 294.99887 * 19 16 14 36 36 H 1.07999 * 119.99751 * 359.97438 * 21 20 19 37 37 H 1.08002 * 119.99744 * 179.97438 * 22 21 20 38 38 H 1.07998 * 120.00395 * 179.72811 * 23 22 21 39 39 H 1.08000 * 119.99962 * 180.30225 * 24 23 22 40 40 H 1.08002 * 120.00264 * 179.76377 * 25 24 23 41 41 H 0.96693 * 114.00248 * 179.97438 * 28 26 11 42 42 H 1.08994 * 109.87973 * 59.57456 * 29 9 7 43 43 H 1.09002 * 110.01056 * 298.48457 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 1.9342 -3.7313 0.0005 11 6 0.8518 -4.6564 -0.6098 12 1 0.8562 -4.5976 -1.6982 13 7 1.0291 -6.0395 -0.1607 14 6 1.8114 -6.8815 -0.8647 15 8 2.3689 -6.4941 -1.8696 16 6 1.9943 -8.3042 -0.4024 17 1 1.6530 -8.3979 0.6286 18 9 1.2484 -9.1598 -1.2202 19 6 3.4748 -8.6812 -0.4857 20 6 3.6755 -10.0590 0.0908 21 6 3.5846 -11.1702 -0.7265 22 6 3.7692 -12.4340 -0.1978 23 6 4.0393 -12.5871 1.1492 24 6 4.1358 -11.4756 1.9654 25 6 3.9513 -10.2117 1.4367 26 6 -0.4484 -4.0442 -0.0250 27 1 -1.2992 -4.2545 -0.6731 28 8 -0.6882 -4.5338 1.2959 29 6 -0.1375 -2.5328 0.0005 30 1 -0.4850 0.8400 -0.0004 31 1 2.1680 -4.0415 1.0189 32 1 2.8331 -3.7413 -0.6158 33 1 0.5836 -6.3493 0.6433 34 1 4.0656 -7.9609 0.0803 35 1 3.7936 -8.6735 -1.5280 36 1 3.3694 -11.0509 -1.7781 37 1 3.6978 -13.3022 -0.8363 38 1 4.1792 -13.5748 1.5632 39 1 4.3517 -11.5949 3.0169 40 1 4.0230 -9.3435 2.0751 41 1 -1.4893 -4.1811 1.7067 42 1 -0.5574 -2.0527 -0.8833 43 1 -0.5568 -2.0834 0.9008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221055463.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:59 Heat of formation + Delta-G solvation = -104.115641 kcal Electronic energy + Delta-G solvation = -26811.149328 eV Core-core repulsion = 22770.372547 eV Total energy + Delta-G solvation = -4040.776781 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -48.95560 -41.09525 -40.09276 -39.41981 -36.46973 -35.56670 -34.72333 -33.62483 -31.74555 -30.89032 -29.99150 -28.75785 -26.65326 -25.43953 -23.43743 -22.57478 -22.15134 -21.71081 -21.48532 -19.40339 -18.76963 -18.35576 -17.73760 -17.59043 -16.93864 -16.81761 -16.39296 -16.10855 -15.81683 -15.78743 -15.63409 -15.30639 -14.80140 -14.63627 -14.37910 -14.25414 -14.10196 -13.92933 -13.70165 -13.59157 -13.19316 -12.98351 -12.84537 -12.74646 -12.34425 -12.30261 -12.16931 -11.97067 -11.96109 -11.87685 -11.82848 -10.99870 -10.86125 -10.76800 -10.22121 -9.78919 -9.63428 -8.96113 -7.89463 -5.25389 0.40387 0.53412 1.27485 1.45285 1.48345 1.54396 1.80868 2.47591 2.86579 3.10086 3.29651 3.31144 3.53838 3.59685 3.67438 3.81140 3.83317 3.92224 3.98438 4.14726 4.20436 4.23734 4.34336 4.46810 4.56321 4.63318 4.65647 4.80833 4.82677 4.85821 4.96722 5.14396 5.20532 5.31127 5.38757 5.46056 5.59707 5.64338 5.65919 5.70804 6.13486 6.14184 6.38249 6.83971 7.04086 7.05765 7.69882 8.33078 9.20295 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.024006 B = 0.002486 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.106963 B =11262.073518 C =11595.139451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.061 4.061 3 Si 0.980 3.020 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.247 4.247 8 H 0.078 0.922 9 N -0.622 5.622 10 C 0.133 3.867 11 C 0.147 3.853 12 H 0.091 0.909 13 N -0.684 5.684 14 C 0.488 3.512 15 O -0.564 6.564 16 C 0.100 3.900 17 H 0.134 0.866 18 F -0.197 7.197 19 C -0.093 4.093 20 C -0.099 4.099 21 C -0.122 4.122 22 C -0.128 4.128 23 C -0.125 4.125 24 C -0.126 4.126 25 C -0.121 4.121 26 C 0.093 3.907 27 H 0.091 0.909 28 O -0.563 6.563 29 C 0.160 3.840 30 H 0.250 0.750 31 H 0.030 0.970 32 H 0.030 0.970 33 H 0.423 0.577 34 H 0.103 0.897 35 H 0.082 0.918 36 H 0.120 0.880 37 H 0.138 0.862 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.138 0.862 41 H 0.400 0.600 42 H 0.024 0.976 43 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.485 -24.682 4.782 25.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.254 4.254 3 Si 0.808 3.192 4 H -0.206 1.206 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.376 4.376 8 H 0.096 0.904 9 N -0.349 5.349 10 C 0.006 3.994 11 C 0.041 3.959 12 H 0.109 0.891 13 N -0.336 5.336 14 C 0.273 3.727 15 O -0.442 6.442 16 C 0.061 3.939 17 H 0.152 0.848 18 F -0.178 7.178 19 C -0.131 4.131 20 C -0.099 4.099 21 C -0.140 4.140 22 C -0.146 4.146 23 C -0.143 4.143 24 C -0.144 4.144 25 C -0.139 4.139 26 C 0.032 3.968 27 H 0.109 0.891 28 O -0.372 6.372 29 C 0.034 3.966 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.261 0.739 34 H 0.122 0.878 35 H 0.101 0.899 36 H 0.138 0.862 37 H 0.156 0.844 38 H 0.160 0.840 39 H 0.161 0.839 40 H 0.156 0.844 41 H 0.251 0.749 42 H 0.042 0.958 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 3.340 -24.528 3.944 25.066 hybrid contribution -0.418 1.559 0.074 1.616 sum 2.921 -22.969 4.018 23.500 Atomic orbital electron populations 1.70097 1.06045 1.25609 1.57931 1.25613 0.96758 1.00840 1.02204 0.85140 0.77220 0.78716 0.78169 1.20553 1.21631 1.20288 1.19374 0.90929 0.83610 1.43666 0.90449 1.44559 1.02482 1.00613 1.87230 1.21877 0.94975 0.85068 0.97436 1.22025 0.94764 0.80517 0.98618 0.89095 1.45682 1.48223 1.10099 1.29637 1.21520 0.78722 0.88756 0.83726 1.90734 1.48198 1.78514 1.26763 1.21615 0.93157 0.83197 0.95906 0.84809 1.92867 1.78329 1.70906 1.75650 1.20982 0.92995 0.95363 1.03782 1.19703 1.01680 0.93958 0.94598 1.21262 0.99723 0.92843 1.00131 1.21420 0.99673 0.97305 0.96220 1.21519 0.99166 0.99899 0.93746 1.21470 0.99594 0.92254 1.01047 1.21344 0.99554 0.98793 0.94235 1.23119 0.96018 0.92686 0.84949 0.89119 1.86187 1.50852 1.71065 1.29100 1.21714 0.84172 0.91404 0.99300 0.94110 0.95189 0.95128 0.73863 0.87819 0.89907 0.86193 0.84419 0.83951 0.83882 0.84386 0.74932 0.95803 0.95361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.57 10.31 21.65 0.22 -55.35 16 2 C -0.06 -3.45 5.49 84.86 0.47 -2.98 16 3 Si 0.98 45.70 29.55 68.60 2.03 47.73 16 4 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 5 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 6 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 7 C -0.25 -14.04 10.28 84.03 0.86 -13.17 16 8 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 9 N -0.62 -32.19 3.40 -691.89 -2.35 -34.54 16 10 C 0.13 5.74 6.92 86.85 0.60 6.34 16 11 C 0.15 5.25 3.25 46.38 0.15 5.40 16 12 H 0.09 3.56 7.63 -2.39 -0.02 3.54 16 13 N -0.68 -19.03 5.18 -435.96 -2.26 -21.28 16 14 C 0.49 14.07 7.17 87.66 0.63 14.70 16 15 O -0.56 -21.21 16.30 -3.03 -0.05 -21.26 16 16 C 0.10 2.14 3.76 29.85 0.11 2.25 16 17 H 0.13 1.95 8.00 -2.39 -0.02 1.93 16 18 F -0.20 -4.88 16.75 44.97 0.75 -4.13 16 19 C -0.09 -1.88 4.82 29.85 0.14 -1.74 16 20 C -0.10 -1.83 5.00 -19.86 -0.10 -1.93 16 21 C -0.12 -2.24 9.55 22.27 0.21 -2.03 16 22 C -0.13 -1.95 10.05 22.27 0.22 -1.73 16 23 C -0.13 -1.67 10.05 22.27 0.22 -1.45 16 24 C -0.13 -1.70 10.05 22.27 0.22 -1.48 16 25 C -0.12 -1.89 9.70 22.27 0.22 -1.67 16 26 C 0.09 3.12 4.20 31.78 0.13 3.25 16 27 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 28 O -0.56 -15.73 12.14 -148.98 -1.81 -17.54 16 29 C 0.16 7.47 5.14 86.73 0.45 7.91 16 30 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 31 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.42 9.52 7.46 -92.71 -0.69 8.83 16 34 H 0.10 1.91 8.09 -2.39 -0.02 1.89 16 35 H 0.08 1.92 7.99 -2.39 -0.02 1.90 16 36 H 0.12 2.20 8.06 -2.91 -0.02 2.17 16 37 H 0.14 1.53 8.06 -2.91 -0.02 1.50 16 38 H 0.14 1.19 8.06 -2.91 -0.02 1.17 16 39 H 0.14 1.27 8.06 -2.91 -0.02 1.24 16 40 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 41 H 0.40 8.26 9.12 -74.06 -0.68 7.59 16 42 H 0.02 1.25 7.38 -2.39 -0.02 1.24 16 43 H 0.03 1.45 7.43 -2.39 -0.02 1.43 16 Total: -1.00 -72.98 364.32 0.76 -72.22 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: -0.33 Total: 22.46 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: 4.55 Total: 11.68 kcal Atomic # 7 Polarization: -106.78 SS G_CDS: -4.38 Total: -111.17 kcal Atomic # 8 Polarization: -36.94 SS G_CDS: -1.86 Total: -38.80 kcal Atomic # 9 Polarization: -4.88 SS G_CDS: 0.75 Total: -4.13 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -72.98 0.76 -72.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221055463.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.892 kcal (2) G-P(sol) polarization free energy of solvation -72.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds