Wall clock time and date at job start Tue Mar 31 2020 13:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46895 * 109.47172 * 2 1 4 4 C 1.46907 * 109.47005 * 240.00100 * 2 1 3 5 5 C 1.46898 * 109.47155 * 120.00395 * 2 1 3 6 6 C 1.53003 * 109.47381 * 64.49118 * 5 2 1 7 7 H 1.08999 * 109.46421 * 53.27728 * 6 5 2 8 8 C 1.50694 * 109.47056 * 173.27644 * 6 5 2 9 9 H 1.08003 * 119.99930 * 240.00321 * 8 6 5 10 10 C 1.37875 * 120.00315 * 60.00423 * 8 6 5 11 11 N 1.31523 * 119.99536 * 359.97438 * 10 8 6 12 12 Si 1.86795 * 120.00434 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.47233 * 60.00137 * 12 10 8 14 14 H 1.48498 * 109.47412 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47254 * 300.00057 * 12 10 8 16 16 O 1.42897 * 109.47196 * 293.28005 * 6 5 2 17 17 C 1.42900 * 114.00124 * 149.99681 * 16 6 5 18 18 C 1.50697 * 109.47500 * 179.97438 * 17 16 6 19 19 C 1.35503 * 120.04663 * 0.02562 * 18 17 16 20 20 C 1.39497 * 121.58032 * 179.66117 * 19 18 17 21 21 C 1.35501 * 121.58177 * 0.64015 * 20 19 18 22 22 C 1.41762 * 119.89969 * 359.39256 * 21 20 19 23 23 N 1.32333 * 131.00543 * 180.28319 * 22 21 20 24 24 S 1.55546 * 109.41740 * 180.02562 * 23 22 21 25 25 N 1.55529 * 100.20541 * 359.97438 * 24 23 22 26 26 C 1.32334 * 109.42169 * 359.97438 * 25 24 23 27 27 H 1.09001 * 109.47251 * 290.73373 * 1 2 3 28 28 H 1.09009 * 109.46982 * 50.73122 * 1 2 3 29 29 H 1.08993 * 109.47210 * 170.72697 * 1 2 3 30 30 H 1.09001 * 109.46945 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47238 * 299.99868 * 3 2 1 32 32 H 1.09001 * 109.47065 * 60.00266 * 3 2 1 33 33 H 1.09004 * 109.46907 * 300.00224 * 4 2 1 34 34 H 1.08998 * 109.47312 * 60.00189 * 4 2 1 35 35 H 1.09001 * 109.47055 * 180.02562 * 4 2 1 36 36 H 1.09008 * 109.46672 * 304.49483 * 5 2 1 37 37 H 1.08992 * 109.47126 * 184.49746 * 5 2 1 38 38 H 0.97004 * 119.99657 * 179.97438 * 11 10 8 39 39 H 1.09011 * 109.46869 * 59.99643 * 17 16 6 40 40 H 1.09006 * 109.47235 * 300.00192 * 17 16 6 41 41 H 1.07995 * 119.21437 * 359.97438 * 19 18 17 42 42 H 1.08004 * 119.21236 * 180.30539 * 20 19 18 43 43 H 1.08005 * 120.05164 * 179.67080 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9587 1.3849 0.0000 4 6 1.9587 -0.6925 -1.1995 5 6 1.9587 -0.6926 1.1994 6 6 1.5430 -2.1640 1.1441 7 1 1.8690 -2.5983 0.1990 8 6 2.1825 -2.9098 2.2868 9 1 2.8487 -3.7361 2.0868 10 6 1.9173 -2.5375 3.5875 11 7 1.1064 -1.5310 3.8310 12 14 2.7094 -3.4625 5.0039 13 1 4.1871 -3.3616 4.8963 14 1 2.2659 -2.8703 6.2915 15 1 2.3055 -4.8904 4.9502 16 8 0.1212 -2.2616 1.2479 17 6 -0.4353 -3.3886 0.5681 18 6 -1.9320 -3.3925 0.7436 19 6 -2.5334 -2.4137 1.4623 20 6 -3.9168 -2.3822 1.6392 21 6 -4.7216 -3.3359 1.1112 22 6 -4.1608 -4.3905 0.3476 23 7 -4.7292 -5.4173 -0.2637 24 16 -3.6344 -6.2754 -0.9598 25 7 -2.3636 -5.4653 -0.5754 26 6 -2.7131 -4.4193 0.1560 27 1 -0.3634 0.3638 0.9611 28 1 -0.3633 0.6505 -0.7957 29 1 -0.3633 -1.0142 -0.1656 30 1 3.0487 1.3849 0.0005 31 1 1.5954 1.8988 -0.8900 32 1 1.5954 1.8988 0.8900 33 1 1.5953 -1.7202 -1.1995 34 1 1.5954 -0.1787 -2.0895 35 1 3.0487 -0.6929 -1.1993 36 1 1.5310 -0.2273 2.0876 37 1 3.0456 -0.6233 1.2406 38 1 0.9195 -1.2693 4.7462 39 1 -0.0186 -4.3060 0.9842 40 1 -0.1936 -3.3285 -0.4931 41 1 -1.9278 -1.6367 1.9046 42 1 -4.3564 -1.5814 2.2153 43 1 -5.7892 -3.2902 1.2680 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223382648.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:13 Heat of formation + Delta-G solvation = 141.176273 kcal Electronic energy + Delta-G solvation = -26164.440045 eV Core-core repulsion = 22648.742925 eV Total energy + Delta-G solvation = -3515.697121 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.133 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.24061 -41.78569 -38.67796 -37.10342 -35.07461 -34.28968 -32.12852 -30.95302 -30.33656 -30.17477 -28.50049 -27.65250 -26.42964 -24.86571 -23.47714 -22.47430 -21.75047 -20.16212 -18.99715 -18.69119 -18.40029 -18.13506 -17.79304 -17.01311 -16.79125 -16.68151 -16.05902 -15.73106 -15.68046 -15.24754 -14.78005 -14.70031 -14.20333 -14.08049 -13.93494 -13.73524 -13.65700 -13.53891 -13.28132 -13.19735 -12.80294 -12.67277 -12.50801 -12.43831 -12.26611 -12.09766 -11.99180 -11.72328 -11.42126 -11.31651 -11.02993 -10.09176 -9.88190 -9.57639 -9.06851 -7.67724 -5.86744 -0.98098 0.37530 0.55824 0.58859 0.89762 0.92548 2.16001 2.27377 2.32064 2.33537 2.38791 2.43584 2.67203 2.85577 3.07554 3.16957 3.23345 3.39797 3.45379 3.58148 3.69523 3.73046 3.77867 3.78796 3.88898 4.00920 4.05982 4.19899 4.23582 4.25709 4.30286 4.38948 4.44062 4.60357 4.69781 4.95535 5.10833 5.15625 5.29483 5.43162 5.54833 5.64775 6.03809 6.27056 6.33882 6.70904 7.28962 7.96824 9.35491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.271 5.271 3 C -0.040 4.040 4 C -0.046 4.046 5 C -0.003 4.003 6 C 0.202 3.798 7 H 0.033 0.967 8 C -0.566 4.566 9 H 0.071 0.929 10 C 0.095 3.905 11 N -0.862 5.862 12 Si 0.898 3.102 13 H -0.271 1.271 14 H -0.280 1.280 15 H -0.270 1.270 16 O -0.373 6.373 17 C 0.115 3.885 18 C -0.037 4.037 19 C -0.076 4.076 20 C -0.087 4.087 21 C -0.076 4.076 22 C 0.081 3.919 23 N -0.596 5.596 24 S 0.788 5.212 25 N -0.593 5.593 26 C 0.085 3.915 27 H 0.120 0.880 28 H 0.095 0.905 29 H 0.134 0.866 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.116 0.884 33 H 0.118 0.882 34 H 0.107 0.893 35 H 0.114 0.886 36 H 0.158 0.842 37 H 0.116 0.884 38 H 0.276 0.724 39 H 0.072 0.928 40 H 0.046 0.954 41 H 0.154 0.846 42 H 0.138 0.862 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.536 10.853 -12.524 16.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 N 0.070 4.930 3 C -0.182 4.182 4 C -0.188 4.188 5 C -0.121 4.121 6 C 0.146 3.854 7 H 0.050 0.950 8 C -0.603 4.603 9 H 0.089 0.911 10 C -0.115 4.115 11 N -0.496 5.496 12 Si 0.724 3.276 13 H -0.196 1.196 14 H -0.205 1.205 15 H -0.195 1.195 16 O -0.293 6.293 17 C 0.038 3.962 18 C -0.044 4.044 19 C -0.100 4.100 20 C -0.112 4.112 21 C -0.101 4.101 22 C -0.078 4.078 23 N -0.447 5.447 24 S 0.836 5.164 25 N -0.444 5.444 26 C -0.074 4.074 27 H 0.139 0.861 28 H 0.113 0.887 29 H 0.152 0.848 30 H 0.130 0.870 31 H 0.126 0.874 32 H 0.134 0.866 33 H 0.137 0.863 34 H 0.126 0.874 35 H 0.132 0.868 36 H 0.175 0.825 37 H 0.134 0.866 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.064 0.936 41 H 0.172 0.828 42 H 0.156 0.844 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.137 9.147 -13.536 16.337 hybrid contribution 0.609 0.685 1.831 2.048 sum 0.746 9.832 -11.704 15.304 Atomic orbital electron populations 1.24329 0.76424 1.09783 1.07633 1.46390 1.15632 1.14287 1.16643 1.23985 1.04840 0.81408 1.07985 1.24045 1.04927 1.02540 0.87271 1.24951 1.03023 0.97978 0.86147 1.19911 0.80130 0.88357 0.96979 0.94969 1.21200 1.30839 1.18076 0.90169 0.91082 1.24944 0.92943 0.94217 0.99352 1.69609 1.32089 1.25742 1.22171 0.86498 0.79881 0.80710 0.80523 1.19586 1.20468 1.19529 1.87943 1.22670 1.43678 1.75055 1.20772 0.88386 0.92364 0.94645 1.18837 0.94467 0.92516 0.98535 1.20770 0.94223 0.98773 0.96225 1.20873 0.93615 0.98364 0.98336 1.20291 1.00608 0.91794 0.97406 1.21297 0.90429 0.95366 1.00671 1.72234 1.38708 1.13143 1.20618 1.78649 0.79235 1.25033 1.33518 1.72207 1.36234 1.13442 1.22529 1.21099 0.92615 0.94572 0.99121 0.86127 0.88672 0.84835 0.86992 0.87410 0.86557 0.86334 0.87402 0.86766 0.82500 0.86605 0.91398 0.91041 0.93584 0.82835 0.84423 0.84459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.37 7.17 60.07 0.43 0.80 16 2 N -0.27 2.68 0.05 -395.62 -0.02 2.66 16 3 C -0.04 0.50 8.00 60.06 0.48 0.98 16 4 C -0.05 0.51 7.54 60.07 0.45 0.96 16 5 C 0.00 0.01 3.52 -3.82 -0.01 0.00 16 6 C 0.20 0.11 1.85 -27.88 -0.05 0.06 16 7 H 0.03 -0.04 5.49 -51.93 -0.28 -0.33 16 8 C -0.57 -3.87 8.89 -34.44 -0.31 -4.18 16 9 H 0.07 0.60 7.81 -52.48 -0.41 0.19 16 10 C 0.09 0.82 5.24 -17.82 -0.09 0.72 16 11 N -0.86 -6.90 10.95 55.43 0.61 -6.29 16 12 Si 0.90 8.28 29.54 -169.99 -5.02 3.26 16 13 H -0.27 -2.57 7.11 56.52 0.40 -2.17 16 14 H -0.28 -2.84 7.11 56.52 0.40 -2.44 16 15 H -0.27 -2.90 7.11 56.52 0.40 -2.49 16 16 O -0.37 -0.32 4.88 -35.23 -0.17 -0.49 16 17 C 0.12 0.19 5.39 36.00 0.19 0.39 16 18 C -0.04 -0.08 5.91 -104.26 -0.62 -0.70 16 19 C -0.08 -0.05 9.27 -40.09 -0.37 -0.43 16 20 C -0.09 0.01 9.89 -40.09 -0.40 -0.39 16 21 C -0.08 -0.12 10.09 -39.21 -0.40 -0.52 16 22 C 0.08 0.31 7.16 -83.17 -0.60 -0.29 16 23 N -0.60 -2.39 11.44 25.62 0.29 -2.09 16 24 S 0.79 1.20 23.60 -107.50 -2.54 -1.33 16 25 N -0.59 -2.18 11.39 25.62 0.29 -1.89 16 26 C 0.09 0.32 6.91 -83.17 -0.58 -0.25 16 27 H 0.12 -0.96 7.94 -51.93 -0.41 -1.37 16 28 H 0.09 -1.13 8.01 -51.92 -0.42 -1.54 16 29 H 0.13 -0.93 5.04 -51.93 -0.26 -1.19 16 30 H 0.11 -1.43 8.12 -51.93 -0.42 -1.85 16 31 H 0.11 -1.52 8.07 -51.93 -0.42 -1.94 16 32 H 0.12 -1.38 8.14 -51.93 -0.42 -1.80 16 33 H 0.12 -1.09 5.86 -51.93 -0.30 -1.40 16 34 H 0.11 -1.43 8.14 -51.93 -0.42 -1.85 16 35 H 0.11 -1.34 8.14 -51.93 -0.42 -1.76 16 36 H 0.16 -0.20 6.12 -51.92 -0.32 -0.52 16 37 H 0.12 -0.53 8.09 -51.93 -0.42 -0.95 16 38 H 0.28 2.46 8.31 -40.82 -0.34 2.12 16 39 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 40 H 0.05 -0.02 8.08 -51.93 -0.42 -0.44 16 41 H 0.15 0.02 6.89 -52.49 -0.36 -0.34 16 42 H 0.14 -0.37 8.06 -52.48 -0.42 -0.79 16 43 H 0.14 0.01 8.06 -52.48 -0.42 -0.41 16 LS Contribution 352.51 15.07 5.31 5.31 Total: 0.00 -17.83 352.51 -9.22 -27.05 By element: Atomic # 1 Polarization: -17.23 SS G_CDS: -6.12 Total: -23.35 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -1.86 Total: -2.84 kcal Atomic # 7 Polarization: -8.79 SS G_CDS: 1.17 Total: -7.61 kcal Atomic # 8 Polarization: -0.32 SS G_CDS: -0.17 Total: -0.49 kcal Atomic # 14 Polarization: 8.28 SS G_CDS: -5.02 Total: 3.26 kcal Atomic # 16 Polarization: 1.20 SS G_CDS: -2.54 Total: -1.33 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -17.83 -9.22 -27.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223382648.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.230 kcal (2) G-P(sol) polarization free energy of solvation -17.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds