Wall clock time and date at job start Tue Mar 31 2020 13:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46895 * 109.47172 * 2 1 4 4 C 1.46907 * 109.47005 * 240.00100 * 2 1 3 5 5 C 1.46898 * 109.47155 * 120.00395 * 2 1 3 6 6 C 1.53003 * 109.47381 * 64.49118 * 5 2 1 7 7 H 1.08999 * 109.46421 * 53.27728 * 6 5 2 8 8 C 1.50694 * 109.47056 * 173.27644 * 6 5 2 9 9 H 1.08003 * 119.99930 * 240.00321 * 8 6 5 10 10 C 1.37875 * 120.00315 * 60.00423 * 8 6 5 11 11 N 1.31523 * 119.99536 * 359.97438 * 10 8 6 12 12 Si 1.86795 * 120.00434 * 179.97438 * 10 8 6 13 13 H 1.48506 * 109.47233 * 60.00137 * 12 10 8 14 14 H 1.48498 * 109.47412 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.47254 * 300.00057 * 12 10 8 16 16 O 1.42897 * 109.47196 * 293.28005 * 6 5 2 17 17 C 1.42900 * 114.00124 * 149.99681 * 16 6 5 18 18 C 1.50697 * 109.47500 * 179.97438 * 17 16 6 19 19 C 1.35503 * 120.04663 * 0.02562 * 18 17 16 20 20 C 1.39497 * 121.58032 * 179.66117 * 19 18 17 21 21 C 1.35501 * 121.58177 * 0.64015 * 20 19 18 22 22 C 1.41762 * 119.89969 * 359.39256 * 21 20 19 23 23 N 1.32333 * 131.00543 * 180.28319 * 22 21 20 24 24 S 1.55546 * 109.41740 * 180.02562 * 23 22 21 25 25 N 1.55529 * 100.20541 * 359.97438 * 24 23 22 26 26 C 1.32334 * 109.42169 * 359.97438 * 25 24 23 27 27 H 1.09001 * 109.47251 * 290.73373 * 1 2 3 28 28 H 1.09009 * 109.46982 * 50.73122 * 1 2 3 29 29 H 1.08993 * 109.47210 * 170.72697 * 1 2 3 30 30 H 1.09001 * 109.46945 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47238 * 299.99868 * 3 2 1 32 32 H 1.09001 * 109.47065 * 60.00266 * 3 2 1 33 33 H 1.09004 * 109.46907 * 300.00224 * 4 2 1 34 34 H 1.08998 * 109.47312 * 60.00189 * 4 2 1 35 35 H 1.09001 * 109.47055 * 180.02562 * 4 2 1 36 36 H 1.09008 * 109.46672 * 304.49483 * 5 2 1 37 37 H 1.08992 * 109.47126 * 184.49746 * 5 2 1 38 38 H 0.97004 * 119.99657 * 179.97438 * 11 10 8 39 39 H 1.09011 * 109.46869 * 59.99643 * 17 16 6 40 40 H 1.09006 * 109.47235 * 300.00192 * 17 16 6 41 41 H 1.07995 * 119.21437 * 359.97438 * 19 18 17 42 42 H 1.08004 * 119.21236 * 180.30539 * 20 19 18 43 43 H 1.08005 * 120.05164 * 179.67080 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9587 1.3849 0.0000 4 6 1.9587 -0.6925 -1.1995 5 6 1.9587 -0.6926 1.1994 6 6 1.5430 -2.1640 1.1441 7 1 1.8690 -2.5983 0.1990 8 6 2.1825 -2.9098 2.2868 9 1 2.8487 -3.7361 2.0868 10 6 1.9173 -2.5375 3.5875 11 7 1.1064 -1.5310 3.8310 12 14 2.7094 -3.4625 5.0039 13 1 4.1871 -3.3616 4.8963 14 1 2.2659 -2.8703 6.2915 15 1 2.3055 -4.8904 4.9502 16 8 0.1212 -2.2616 1.2479 17 6 -0.4353 -3.3886 0.5681 18 6 -1.9320 -3.3925 0.7436 19 6 -2.5334 -2.4137 1.4623 20 6 -3.9168 -2.3822 1.6392 21 6 -4.7216 -3.3359 1.1112 22 6 -4.1608 -4.3905 0.3476 23 7 -4.7292 -5.4173 -0.2637 24 16 -3.6344 -6.2754 -0.9598 25 7 -2.3636 -5.4653 -0.5754 26 6 -2.7131 -4.4193 0.1560 27 1 -0.3634 0.3638 0.9611 28 1 -0.3633 0.6505 -0.7957 29 1 -0.3633 -1.0142 -0.1656 30 1 3.0487 1.3849 0.0005 31 1 1.5954 1.8988 -0.8900 32 1 1.5954 1.8988 0.8900 33 1 1.5953 -1.7202 -1.1995 34 1 1.5954 -0.1787 -2.0895 35 1 3.0487 -0.6929 -1.1993 36 1 1.5310 -0.2273 2.0876 37 1 3.0456 -0.6233 1.2406 38 1 0.9195 -1.2693 4.7462 39 1 -0.0186 -4.3060 0.9842 40 1 -0.1936 -3.3285 -0.4931 41 1 -1.9278 -1.6367 1.9046 42 1 -4.3564 -1.5814 2.2153 43 1 -5.7892 -3.2902 1.2680 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223382648.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:12 Heat of formation + Delta-G solvation = 136.477643 kcal Electronic energy + Delta-G solvation = -26164.643793 eV Core-core repulsion = 22648.742925 eV Total energy + Delta-G solvation = -3515.900869 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.133 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.59307 -41.91696 -38.73543 -37.19635 -35.30004 -34.65702 -32.26210 -30.87353 -29.49493 -29.34566 -28.60809 -27.71777 -26.56166 -24.53960 -23.56377 -22.34529 -21.86531 -20.30735 -19.01696 -18.50655 -17.93039 -17.81100 -17.48378 -16.99066 -16.92493 -16.75637 -16.40196 -15.92553 -15.75763 -15.20551 -14.48721 -14.03596 -13.83553 -13.62328 -13.43362 -13.26783 -13.21295 -13.16054 -13.06311 -12.96415 -12.92950 -12.77161 -12.75116 -12.71279 -12.61824 -12.48621 -12.39080 -11.94486 -11.88114 -11.51310 -11.16414 -10.75089 -10.08127 -9.68912 -9.19928 -8.30111 -6.43128 -1.12440 0.41114 0.44504 0.75286 0.79180 1.11542 1.34496 1.43352 1.51724 2.33266 2.57328 2.67000 2.95583 3.14351 3.18507 3.22872 3.45596 3.90499 4.02152 4.04503 4.09749 4.16903 4.23642 4.33619 4.38518 4.41295 4.42209 4.52250 4.54924 4.56581 4.70830 4.73909 4.82161 4.85783 4.86325 5.00001 5.07736 5.13250 5.33206 5.38499 5.48405 5.56955 5.67106 5.94517 5.96930 6.40876 6.83511 7.37567 8.69185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.258 5.258 3 C -0.042 4.042 4 C -0.052 4.052 5 C 0.019 3.981 6 C 0.197 3.803 7 H 0.053 0.947 8 C -0.572 4.572 9 H 0.045 0.955 10 C 0.080 3.920 11 N -0.857 5.857 12 Si 0.905 3.095 13 H -0.275 1.275 14 H -0.292 1.292 15 H -0.297 1.297 16 O -0.366 6.366 17 C 0.124 3.876 18 C -0.053 4.053 19 C -0.065 4.065 20 C -0.076 4.076 21 C -0.089 4.089 22 C 0.063 3.937 23 N -0.625 5.625 24 S 0.837 5.163 25 N -0.619 5.619 26 C 0.068 3.932 27 H 0.108 0.892 28 H 0.133 0.867 29 H 0.111 0.889 30 H 0.120 0.880 31 H 0.138 0.862 32 H 0.111 0.889 33 H 0.098 0.902 34 H 0.141 0.859 35 H 0.125 0.875 36 H 0.134 0.866 37 H 0.124 0.876 38 H 0.267 0.733 39 H 0.030 0.970 40 H 0.069 0.931 41 H 0.161 0.839 42 H 0.170 0.830 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.145 13.421 -14.637 19.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 N 0.084 4.916 3 C -0.182 4.182 4 C -0.193 4.193 5 C -0.102 4.102 6 C 0.141 3.859 7 H 0.071 0.929 8 C -0.611 4.611 9 H 0.063 0.937 10 C -0.127 4.127 11 N -0.493 5.493 12 Si 0.735 3.265 13 H -0.200 1.200 14 H -0.218 1.218 15 H -0.224 1.224 16 O -0.285 6.285 17 C 0.047 3.953 18 C -0.060 4.060 19 C -0.089 4.089 20 C -0.100 4.100 21 C -0.114 4.114 22 C -0.095 4.095 23 N -0.478 5.478 24 S 0.885 5.115 25 N -0.471 5.471 26 C -0.090 4.090 27 H 0.126 0.874 28 H 0.151 0.849 29 H 0.129 0.871 30 H 0.139 0.861 31 H 0.157 0.843 32 H 0.130 0.870 33 H 0.117 0.883 34 H 0.159 0.841 35 H 0.143 0.857 36 H 0.152 0.848 37 H 0.142 0.858 38 H 0.077 0.923 39 H 0.048 0.952 40 H 0.086 0.914 41 H 0.179 0.821 42 H 0.187 0.813 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -0.247 11.736 -15.650 19.563 hybrid contribution 0.744 -0.201 2.419 2.539 sum 0.497 11.535 -13.230 17.560 Atomic orbital electron populations 1.24315 0.76500 1.09145 1.08437 1.45985 1.15440 1.15376 1.14779 1.24175 1.05506 0.79243 1.09307 1.24225 1.05760 1.01747 0.87543 1.24089 1.03185 0.95126 0.87781 1.19932 0.79358 0.91153 0.95443 0.92910 1.21488 1.29906 1.17767 0.91897 0.93669 1.24963 0.93833 0.94666 0.99241 1.69654 1.32764 1.25782 1.21051 0.86493 0.79685 0.79181 0.81171 1.20045 1.21752 1.22424 1.87962 1.22448 1.42742 1.75371 1.20608 0.88237 0.90782 0.95637 1.18946 0.94563 0.93010 0.99453 1.20928 0.94808 0.98211 0.94968 1.21188 0.93002 0.98421 0.97372 1.20576 1.01542 0.91703 0.97554 1.21632 0.90592 0.95985 1.01301 1.72146 1.40020 1.13913 1.21683 1.78298 0.77823 1.23530 1.31891 1.72106 1.37644 1.14076 1.23317 1.21311 0.93011 0.95011 0.99676 0.87359 0.84895 0.87078 0.86121 0.84338 0.87037 0.88341 0.84064 0.85686 0.84843 0.85801 0.92338 0.95193 0.91375 0.82110 0.81303 0.83229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.87 7.17 127.69 0.92 1.78 16 2 N -0.26 5.62 0.05 ******* -0.07 5.55 16 3 C -0.04 1.15 8.00 127.69 1.02 2.17 16 4 C -0.05 1.27 7.54 127.69 0.96 2.23 16 5 C 0.02 -0.16 3.52 86.30 0.30 0.14 16 6 C 0.20 0.32 1.85 29.85 0.06 0.38 16 7 H 0.05 -0.14 5.49 -2.39 -0.01 -0.15 16 8 C -0.57 -8.92 8.89 25.60 0.23 -8.69 16 9 H 0.04 0.89 7.81 -2.91 -0.02 0.87 16 10 C 0.08 1.55 5.24 84.65 0.44 1.99 16 11 N -0.86 -14.89 10.95 21.45 0.23 -14.65 16 12 Si 0.90 19.29 29.54 68.60 2.03 21.32 16 13 H -0.28 -5.89 7.11 99.48 0.71 -5.19 16 14 H -0.29 -6.70 7.11 99.48 0.71 -6.00 16 15 H -0.30 -7.52 7.11 99.48 0.71 -6.81 16 16 O -0.37 -0.87 4.88 -148.98 -0.73 -1.60 16 17 C 0.12 0.58 5.39 71.23 0.38 0.96 16 18 C -0.05 -0.28 5.91 -19.63 -0.12 -0.40 16 19 C -0.07 -0.08 9.27 21.94 0.20 0.12 16 20 C -0.08 0.08 9.89 21.94 0.22 0.30 16 21 C -0.09 -0.26 10.09 22.51 0.23 -0.04 16 22 C 0.06 0.52 7.16 41.97 0.30 0.82 16 23 N -0.63 -5.50 11.44 -72.84 -0.83 -6.33 16 24 S 0.84 3.24 23.60 -56.49 -1.33 1.90 16 25 N -0.62 -5.32 11.39 -72.87 -0.83 -6.15 16 26 C 0.07 0.59 6.91 41.97 0.29 0.88 16 27 H 0.11 -1.85 7.94 -2.39 -0.02 -1.86 16 28 H 0.13 -3.64 8.01 -2.38 -0.02 -3.66 16 29 H 0.11 -1.66 5.04 -2.39 -0.01 -1.67 16 30 H 0.12 -3.44 8.12 -2.39 -0.02 -3.46 16 31 H 0.14 -4.54 8.07 -2.39 -0.02 -4.56 16 32 H 0.11 -2.86 8.14 -2.39 -0.02 -2.88 16 33 H 0.10 -1.95 5.86 -2.38 -0.01 -1.96 16 34 H 0.14 -4.31 8.14 -2.39 -0.02 -4.33 16 35 H 0.12 -3.27 8.14 -2.39 -0.02 -3.29 16 36 H 0.13 -0.34 6.12 -2.38 -0.01 -0.36 16 37 H 0.12 -1.23 8.09 -2.39 -0.02 -1.25 16 38 H 0.27 5.16 8.31 -92.70 -0.77 4.39 16 39 H 0.03 0.39 8.14 -2.38 -0.02 0.37 16 40 H 0.07 -0.03 8.08 -2.38 -0.02 -0.05 16 41 H 0.16 -0.04 6.89 -2.91 -0.02 -0.06 16 42 H 0.17 -1.29 8.06 -2.91 -0.02 -1.31 16 43 H 0.15 -0.03 8.06 -2.91 -0.02 -0.06 16 Total: 0.00 -45.52 352.51 4.92 -40.60 By element: Atomic # 1 Polarization: -44.29 SS G_CDS: 1.01 Total: -43.27 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: 5.44 Total: 2.63 kcal Atomic # 7 Polarization: -20.09 SS G_CDS: -1.50 Total: -21.58 kcal Atomic # 8 Polarization: -0.87 SS G_CDS: -0.73 Total: -1.60 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: 2.03 Total: 21.32 kcal Atomic # 16 Polarization: 3.24 SS G_CDS: -1.33 Total: 1.90 kcal Total: -45.52 4.92 -40.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223382648.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.080 kcal (2) G-P(sol) polarization free energy of solvation -45.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds