Wall clock time and date at job start Tue Mar 31 2020 13:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.38920 * 120.69840 * 90.47345 * 3 2 1 5 5 C 1.38816 * 120.57134 * 179.97438 * 4 3 2 6 6 C 1.36117 * 121.84450 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.66669 * 180.02562 * 6 5 4 8 8 O 1.42899 * 109.47089 * 359.97438 * 7 6 5 9 9 C 1.42908 * 114.00099 * 180.02562 * 8 7 6 10 10 H 1.09001 * 110.63780 * 31.68048 * 9 8 7 11 11 C 1.55149 * 110.72329 * 155.02329 * 9 8 7 12 12 C 1.54909 * 101.58440 * 153.86293 * 11 9 8 13 13 N 1.47428 * 104.83129 * 322.99306 * 12 11 9 14 14 C 1.36933 * 125.64965 * 204.09668 * 13 12 11 15 15 H 1.07997 * 120.00236 * 169.98252 * 14 13 12 16 16 C 1.38812 * 119.99632 * 349.97899 * 14 13 12 17 17 N 1.31615 * 120.00330 * 350.41948 * 16 14 13 18 18 Si 1.86805 * 119.99875 * 170.42791 * 16 14 13 19 19 H 1.48496 * 109.47634 * 94.13588 * 18 16 14 20 20 H 1.48495 * 109.47096 * 214.14075 * 18 16 14 21 21 H 1.48506 * 109.47080 * 334.13431 * 18 16 14 22 22 C 1.47019 * 108.70398 * 24.12170 * 13 12 11 23 23 C 1.40482 * 120.66889 * 359.97438 * 6 5 4 24 24 C 1.40561 * 121.33801 * 179.97438 * 23 6 5 25 25 C 1.36146 * 119.63148 * 180.02562 * 24 23 6 26 26 C 1.39293 * 121.00331 * 0.27088 * 25 24 23 27 27 C 1.36308 * 120.91920 * 359.41500 * 26 25 24 28 28 C 1.40019 * 119.60724 * 0.59628 * 27 26 25 29 29 H 1.07997 * 119.71038 * 359.95397 * 4 3 2 30 30 H 1.08004 * 119.07796 * 180.02562 * 5 4 3 31 31 H 1.08997 * 109.47629 * 119.98088 * 7 6 5 32 32 H 1.09000 * 109.46903 * 239.97930 * 7 6 5 33 33 H 1.08997 * 111.00563 * 271.93677 * 11 9 8 34 34 H 1.09008 * 111.00486 * 35.79073 * 11 9 8 35 35 H 1.09003 * 110.36890 * 204.15530 * 12 11 9 36 36 H 1.08995 * 110.46046 * 81.87487 * 12 11 9 37 37 H 0.97000 * 120.00348 * 179.97438 * 17 16 14 38 38 H 1.08996 * 109.89158 * 239.52563 * 22 13 12 39 39 H 1.09006 * 109.87893 * 118.35823 * 22 13 12 40 40 H 1.08006 * 120.18439 * 359.97438 * 24 23 6 41 41 H 1.07992 * 119.49564 * 179.97438 * 25 24 23 42 42 H 1.08003 * 119.54060 * 179.70474 * 26 25 24 43 43 H 1.08000 * 120.19882 * 180.26338 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2772 0.0108 -1.1945 5 6 4.6653 0.0120 -1.1914 6 6 5.3809 0.0027 -0.0336 7 6 6.8870 0.0050 -0.0875 8 8 7.3148 0.0168 -1.4509 9 6 8.7344 0.0193 -1.6146 10 1 9.2160 -0.5228 -0.8009 11 6 9.1296 -0.5815 -2.9894 12 6 10.4917 0.1085 -3.2506 13 7 10.3300 1.4751 -2.7216 14 6 11.0474 2.5731 -3.1150 15 1 10.7490 3.5584 -2.7885 16 6 12.1581 2.4198 -3.9332 17 7 12.6346 1.2175 -4.1776 18 14 12.9769 3.9200 -4.6873 19 1 14.0968 4.3622 -3.8182 20 1 13.5013 3.5738 -6.0328 21 1 11.9832 5.0167 -4.8107 22 6 9.2714 1.4636 -1.7015 23 6 4.7298 -0.0078 1.2112 24 6 5.4548 -0.0180 2.4154 25 6 4.7881 -0.0286 3.6024 26 6 3.3957 -0.0352 3.6433 27 6 2.6613 -0.0193 2.4951 28 6 3.3140 -0.0086 1.2564 29 1 2.7439 0.0176 -2.1336 30 1 5.1923 0.0204 -2.1341 31 1 7.2675 0.8912 0.4204 32 1 7.2695 -0.8886 0.4056 33 1 9.2458 -1.6633 -2.9241 34 1 8.4026 -0.3138 -3.7563 35 1 10.7033 0.1380 -4.3194 36 1 11.2899 -0.4113 -2.7207 37 1 13.4106 1.1103 -4.7497 38 1 8.4684 2.1407 -1.9927 39 1 9.6821 1.7650 -0.7378 40 1 6.5347 -0.0182 2.3991 41 1 5.3472 -0.0368 4.5262 42 1 2.8911 -0.0484 4.5981 43 1 1.5822 -0.0203 2.5404 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224028490.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:29 Heat of formation + Delta-G solvation = 56.066392 kcal Electronic energy + Delta-G solvation = -25366.873736 eV Core-core repulsion = 21763.812194 eV Total energy + Delta-G solvation = -3603.061542 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.78375 -38.56327 -37.25951 -36.73188 -35.71412 -33.42739 -32.15056 -30.73281 -30.06386 -29.18971 -27.44091 -26.65074 -24.35546 -23.71319 -23.28725 -22.09845 -20.32461 -20.21146 -18.91085 -17.70413 -17.19704 -16.92282 -16.35022 -15.84270 -15.37229 -14.89551 -14.71215 -14.47073 -14.26900 -14.21742 -13.99591 -13.75275 -13.52339 -13.27096 -13.15365 -12.80355 -12.53038 -12.46062 -12.14557 -11.87034 -11.74952 -11.51584 -11.27560 -11.17863 -11.07908 -10.88599 -10.79681 -10.38741 -10.13634 -10.04792 -9.84602 -9.71451 -9.25769 -8.99129 -8.62093 -8.16300 -6.84121 -5.77979 -3.10727 -0.12772 0.68735 1.35949 2.35089 2.47536 3.01493 3.38079 3.44070 3.46081 3.53915 3.61096 3.78126 4.25790 4.46967 4.48346 4.53790 4.63651 4.70253 4.93930 5.02868 5.11421 5.22893 5.24970 5.29806 5.37255 5.45428 5.46793 5.51965 5.66581 5.69989 5.76233 5.80691 5.91769 6.00670 6.13974 6.20600 6.33801 6.38524 6.46605 6.50749 6.57406 6.58976 6.66918 7.19329 7.43463 7.47816 7.54274 7.75074 8.22405 9.15917 9.77760 10.44208 11.35254 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.020879 B = 0.002399 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.718448 B =11668.751467 C =12165.896212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C 0.263 3.737 3 C -0.045 4.045 4 C -0.036 4.036 5 C -0.107 4.107 6 C -0.032 4.032 7 C 0.093 3.907 8 O -0.374 6.374 9 C 0.078 3.922 10 H 0.066 0.934 11 C -0.138 4.138 12 C 0.173 3.827 13 N -0.601 5.601 14 C -0.229 4.229 15 H 0.076 0.924 16 C -0.007 4.007 17 N -0.919 5.919 18 Si 0.911 3.089 19 H -0.289 1.289 20 H -0.289 1.289 21 H -0.280 1.280 22 C 0.116 3.884 23 C -0.048 4.048 24 C -0.097 4.097 25 C -0.118 4.118 26 C -0.102 4.102 27 C -0.114 4.114 28 C -0.011 4.011 29 H 0.137 0.863 30 H 0.150 0.850 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.029 0.971 37 H 0.253 0.747 38 H 0.034 0.966 39 H 0.021 0.979 40 H 0.134 0.866 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.176 -5.952 13.390 21.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.098 5.098 2 C -0.051 4.051 3 C -0.048 4.048 4 C -0.057 4.057 5 C -0.125 4.125 6 C -0.033 4.033 7 C 0.016 3.984 8 O -0.293 6.293 9 C 0.020 3.980 10 H 0.084 0.916 11 C -0.177 4.177 12 C 0.048 3.952 13 N -0.328 5.328 14 C -0.357 4.357 15 H 0.094 0.906 16 C -0.204 4.204 17 N -0.566 5.566 18 Si 0.741 3.259 19 H -0.216 1.216 20 H -0.216 1.216 21 H -0.206 1.206 22 C -0.011 4.011 23 C -0.049 4.049 24 C -0.114 4.114 25 C -0.136 4.136 26 C -0.120 4.120 27 C -0.132 4.132 28 C -0.013 4.013 29 H 0.155 0.845 30 H 0.168 0.832 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.047 0.953 37 H 0.064 0.936 38 H 0.052 0.948 39 H 0.039 0.961 40 H 0.152 0.848 41 H 0.145 0.855 42 H 0.144 0.856 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -17.894 -5.903 13.110 22.955 hybrid contribution 1.099 0.796 -0.088 1.360 sum -16.795 -5.107 13.022 21.857 Atomic orbital electron populations 1.81261 1.11877 1.09401 1.07276 1.25474 0.92391 0.93561 0.93709 1.16921 0.83972 1.10069 0.93844 1.21348 0.94325 0.93490 0.96532 1.20646 0.92595 0.99384 0.99882 1.19742 0.95167 0.96041 0.92324 1.21291 0.90064 1.01253 0.85748 1.87864 1.23103 1.95145 1.23179 1.23257 0.78831 0.97173 0.98693 0.91583 1.23131 1.00533 0.99034 0.94967 1.21428 0.89767 0.83756 1.00269 1.44360 1.40563 1.05961 1.41920 1.19020 1.05430 0.85613 1.25668 0.90606 1.24822 0.97274 0.96859 1.01398 1.69938 1.25299 1.20086 1.41296 0.86121 0.79247 0.81856 0.78648 1.21603 1.21565 1.20561 1.21734 0.92333 0.94181 0.92812 1.17654 0.91750 1.02220 0.93243 1.21131 1.00225 0.98742 0.91344 1.20898 0.94375 0.99999 0.98281 1.20935 0.94154 0.98579 0.98339 1.20865 0.99863 1.01016 0.91498 1.18589 0.91835 0.99226 0.91613 0.84505 0.83204 0.91082 0.91341 0.91743 0.91055 0.90863 0.95343 0.93643 0.94804 0.96149 0.84829 0.85491 0.85638 0.85860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.31 18.54 41.84 0.78 -4.54 16 2 C 0.26 2.83 14.25 -22.47 -0.32 2.51 16 3 C -0.04 -0.43 5.91 -104.56 -0.62 -1.05 16 4 C -0.04 -0.32 9.74 -39.12 -0.38 -0.70 16 5 C -0.11 -1.09 9.25 -40.13 -0.37 -1.46 16 6 C -0.03 -0.33 5.88 -104.54 -0.61 -0.94 16 7 C 0.09 1.01 4.81 36.01 0.17 1.19 16 8 O -0.37 -5.31 8.46 -35.23 -0.30 -5.61 16 9 C 0.08 1.28 3.40 -24.90 -0.08 1.20 16 10 H 0.07 0.99 7.88 -51.93 -0.41 0.58 16 11 C -0.14 -2.48 6.81 -24.59 -0.17 -2.65 16 12 C 0.17 4.03 5.42 -2.53 -0.01 4.02 16 13 N -0.60 -15.10 3.39 -170.07 -0.58 -15.68 16 14 C -0.23 -6.32 10.24 -15.06 -0.15 -6.47 16 15 H 0.08 2.03 7.85 -52.49 -0.41 1.62 16 16 C -0.01 -0.19 5.40 -17.43 -0.09 -0.29 16 17 N -0.92 -26.50 10.68 55.49 0.59 -25.91 16 18 Si 0.91 21.75 29.56 -169.99 -5.03 16.73 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 C 0.12 2.35 7.02 -3.06 -0.02 2.33 16 23 C -0.05 -0.47 5.74 -106.87 -0.61 -1.09 16 24 C -0.10 -0.79 9.39 -39.46 -0.37 -1.16 16 25 C -0.12 -0.84 9.94 -39.94 -0.40 -1.24 16 26 C -0.10 -0.74 9.96 -39.88 -0.40 -1.14 16 27 C -0.11 -0.99 9.44 -39.61 -0.37 -1.37 16 28 C -0.01 -0.11 5.90 -104.76 -0.62 -0.72 16 29 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 30 H 0.15 1.59 6.85 -52.48 -0.36 1.23 16 31 H 0.07 0.74 8.06 -51.93 -0.42 0.33 16 32 H 0.07 0.64 8.02 -51.93 -0.42 0.23 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 1.29 8.14 -51.92 -0.42 0.86 16 35 H 0.07 1.91 6.94 -51.93 -0.36 1.55 16 36 H 0.03 0.71 8.07 -51.93 -0.42 0.29 16 37 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 38 H 0.03 0.70 8.06 -51.93 -0.42 0.28 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.13 0.89 6.99 -52.48 -0.37 0.52 16 41 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 42 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 43 H 0.12 1.00 7.31 -52.49 -0.38 0.62 16 LS Contribution 363.38 15.07 5.48 5.48 Total: -1.00 -31.26 363.38 -10.13 -41.39 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -5.64 Total: -2.82 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -5.44 Total: -9.04 kcal Atomic # 7 Polarization: -46.92 SS G_CDS: 0.79 Total: -46.12 kcal Atomic # 8 Polarization: -5.31 SS G_CDS: -0.30 Total: -5.61 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.26 -10.13 -41.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224028490.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.461 kcal (2) G-P(sol) polarization free energy of solvation -31.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds