Wall clock time and date at job start Tue Mar 31 2020 13:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.38915 * 120.69860 * 88.73405 * 3 2 1 5 5 C 1.38828 * 120.57110 * 179.68638 * 4 3 2 6 6 C 1.36123 * 121.83900 * 0.58214 * 5 4 3 7 7 C 1.50704 * 119.66205 * 179.71380 * 6 5 4 8 8 O 1.42902 * 109.47051 * 359.72585 * 7 6 5 9 9 C 1.42900 * 113.99920 * 179.97438 * 8 7 6 10 10 H 1.09002 * 110.88624 * 330.70359 * 9 8 7 11 11 C 1.55156 * 111.00522 * 206.81910 * 9 8 7 12 12 C 1.54428 * 102.89529 * 206.40890 * 11 9 8 13 13 N 1.47023 * 107.28154 * 22.18672 * 12 11 9 14 14 C 1.36933 * 125.65042 * 181.02400 * 13 12 11 15 15 H 1.07992 * 120.00307 * 180.02562 * 14 13 12 16 16 C 1.38816 * 119.99687 * 0.04032 * 14 13 12 17 17 N 1.31619 * 119.99939 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99726 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47031 * 60.00264 * 18 16 14 20 20 H 1.48505 * 109.46983 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47077 * 300.00041 * 18 16 14 22 22 C 1.47430 * 108.69895 * 1.06294 * 13 12 11 23 23 C 1.40481 * 120.67130 * 359.43686 * 6 5 4 24 24 C 1.40563 * 121.34608 * 180.27641 * 23 6 5 25 25 C 1.36138 * 119.62867 * 179.97438 * 24 23 6 26 26 C 1.39294 * 121.01300 * 0.04212 * 25 24 23 27 27 C 1.36302 * 120.91182 * 359.97438 * 26 25 24 28 28 C 1.40010 * 119.61129 * 359.97438 * 27 26 25 29 29 H 1.07999 * 119.71592 * 359.97438 * 4 3 2 30 30 H 1.07990 * 119.08172 * 180.29929 * 5 4 3 31 31 H 1.09000 * 109.46968 * 239.73033 * 7 6 5 32 32 H 1.08997 * 109.47163 * 119.72613 * 7 6 5 33 33 H 1.09001 * 110.72614 * 324.75375 * 11 9 8 34 34 H 1.09002 * 110.71438 * 88.02473 * 11 9 8 35 35 H 1.08996 * 109.87511 * 262.77039 * 12 11 9 36 36 H 1.08994 * 110.00498 * 141.68055 * 12 11 9 37 37 H 0.97004 * 119.99325 * 179.97438 * 17 16 14 38 38 H 1.09008 * 110.36125 * 217.02920 * 22 13 12 39 39 H 1.08997 * 110.36558 * 94.70928 * 22 13 12 40 40 H 1.07999 * 120.18499 * 359.95380 * 24 23 6 41 41 H 1.08001 * 119.49442 * 179.97438 * 25 24 23 42 42 H 1.08006 * 119.54802 * 179.97438 * 26 25 24 43 43 H 1.08001 * 120.19538 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2772 -0.0254 -1.1942 5 6 4.6655 -0.0182 -1.1913 6 6 5.3810 0.0026 -0.0335 7 6 6.8871 0.0030 -0.0874 8 8 7.3149 -0.0267 -1.4506 9 6 8.7345 -0.0282 -1.6143 10 1 9.2216 0.4894 -0.7879 11 6 9.1379 0.5958 -2.9764 12 6 10.4939 -0.0794 -3.2767 13 7 10.5408 -1.3285 -2.5026 14 6 11.5865 -2.2122 -2.4760 15 1 11.5231 -3.1058 -1.8729 16 6 12.7282 -1.9591 -3.2240 17 7 12.8057 -0.8696 -3.9583 18 14 14.1545 -3.1649 -3.1882 19 1 13.6941 -4.4907 -3.6736 20 1 15.2451 -2.6677 -4.0648 21 1 14.6582 -3.2946 -1.7972 22 6 9.2750 -1.4725 -1.7606 23 6 4.7299 0.0294 1.2110 24 6 5.4546 0.0568 2.4151 25 6 4.7877 0.0829 3.6016 26 6 3.3954 0.0820 3.6425 27 6 2.6612 0.0554 2.4944 28 6 3.3141 0.0292 1.2562 29 1 2.7440 -0.0468 -2.1331 30 1 5.1925 -0.0340 -2.1337 31 1 7.2696 -0.8753 0.4326 32 1 7.2676 0.9042 0.3932 33 1 8.4057 0.3496 -3.7455 34 1 9.2555 1.6757 -2.8861 35 1 11.3097 0.5761 -2.9722 36 1 10.5731 -0.2998 -4.3412 37 1 13.6037 -0.6927 -4.4807 38 1 9.4583 -1.9102 -0.7793 39 1 8.5721 -2.0853 -2.3250 40 1 6.5345 0.0569 2.3990 41 1 5.3468 0.1035 4.5255 42 1 2.8905 0.1025 4.5971 43 1 1.5821 0.0554 2.5396 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224028498.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:32 Heat of formation + Delta-G solvation = 57.257003 kcal Electronic energy + Delta-G solvation = -25343.763302 eV Core-core repulsion = 21740.753389 eV Total energy + Delta-G solvation = -3603.009913 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.78521 -38.52767 -37.26242 -36.73842 -35.72687 -33.42995 -32.14604 -30.73520 -30.06356 -29.19177 -27.43059 -26.60512 -24.36773 -23.71460 -23.29179 -22.09355 -20.38853 -20.11124 -18.92359 -17.70875 -17.21963 -16.93767 -16.34027 -15.81194 -15.37894 -14.90989 -14.67085 -14.43215 -14.29195 -14.21870 -13.99746 -13.67429 -13.52951 -13.29962 -13.06254 -12.81833 -12.60750 -12.34782 -12.28101 -11.97709 -11.78248 -11.49275 -11.27075 -11.15417 -11.00766 -10.95776 -10.75357 -10.26416 -10.15775 -10.06330 -9.84089 -9.74748 -9.21799 -8.99348 -8.62809 -8.16546 -6.87639 -5.74445 -3.08643 -0.13066 0.68431 1.35798 2.34570 2.47094 3.01168 3.38782 3.42799 3.44273 3.53430 3.60380 3.77835 4.25459 4.46436 4.48443 4.53980 4.63427 4.70089 4.93870 5.02666 5.12230 5.22830 5.25052 5.32802 5.39705 5.44604 5.50911 5.53333 5.69677 5.69840 5.76135 5.80274 5.91301 6.00233 6.13932 6.17030 6.32631 6.38065 6.43240 6.48534 6.58480 6.62607 6.66622 7.18842 7.47698 7.51849 7.57403 7.78922 8.22195 9.18240 9.78349 10.43424 11.37152 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.022135 B = 0.002381 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.673162 B =11755.681765 C =12462.134740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C 0.263 3.737 3 C -0.045 4.045 4 C -0.036 4.036 5 C -0.108 4.108 6 C -0.031 4.031 7 C 0.094 3.906 8 O -0.375 6.375 9 C 0.073 3.927 10 H 0.069 0.931 11 C -0.138 4.138 12 C 0.178 3.822 13 N -0.604 5.604 14 C -0.230 4.230 15 H 0.078 0.922 16 C -0.008 4.008 17 N -0.923 5.923 18 Si 0.913 3.087 19 H -0.285 1.285 20 H -0.290 1.290 21 H -0.285 1.285 22 C 0.119 3.881 23 C -0.049 4.049 24 C -0.096 4.096 25 C -0.118 4.118 26 C -0.102 4.102 27 C -0.115 4.115 28 C -0.011 4.011 29 H 0.137 0.863 30 H 0.150 0.850 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.048 0.952 36 H 0.047 0.953 37 H 0.253 0.747 38 H 0.037 0.963 39 H 0.028 0.972 40 H 0.134 0.866 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.095 4.782 12.518 21.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.098 5.098 2 C -0.051 4.051 3 C -0.048 4.048 4 C -0.057 4.057 5 C -0.126 4.126 6 C -0.032 4.032 7 C 0.017 3.983 8 O -0.294 6.294 9 C 0.015 3.985 10 H 0.087 0.913 11 C -0.176 4.176 12 C 0.053 3.947 13 N -0.332 5.332 14 C -0.358 4.358 15 H 0.096 0.904 16 C -0.204 4.204 17 N -0.570 5.570 18 Si 0.744 3.256 19 H -0.211 1.211 20 H -0.216 1.216 21 H -0.212 1.212 22 C -0.008 4.008 23 C -0.049 4.049 24 C -0.114 4.114 25 C -0.136 4.136 26 C -0.120 4.120 27 C -0.133 4.133 28 C -0.013 4.013 29 H 0.155 0.845 30 H 0.168 0.832 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.046 0.954 40 H 0.152 0.848 41 H 0.145 0.855 42 H 0.144 0.856 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -18.774 4.768 12.258 22.923 hybrid contribution 1.357 -0.639 0.207 1.515 sum -17.417 4.129 12.465 21.812 Atomic orbital electron populations 1.81263 1.11875 1.09402 1.07279 1.25477 0.92393 0.93561 0.93706 1.16920 0.83966 1.10068 0.93853 1.21347 0.94323 0.93521 0.96525 1.20641 0.92583 0.99469 0.99860 1.19749 0.95181 0.95986 0.92324 1.21289 0.90007 1.01269 0.85707 1.87820 1.23187 1.95140 1.23239 1.23467 0.78538 0.97933 0.98553 0.91311 1.23011 1.00019 0.99351 0.95220 1.21194 0.90427 0.86739 0.96333 1.44342 1.13364 1.23295 1.52181 1.19007 0.92544 1.00649 1.23593 0.90444 1.24815 0.98289 0.97929 0.99376 1.69942 1.28496 1.25870 1.32687 0.86182 0.81867 0.80226 0.77372 1.21120 1.21565 1.21151 1.21917 0.89367 0.93901 0.95631 1.17655 0.91746 1.02223 0.93251 1.21133 1.00247 0.98701 0.91347 1.20900 0.94373 0.99983 0.98297 1.20937 0.94156 0.98549 0.98344 1.20860 0.99862 1.01039 0.91504 1.18587 0.91835 0.99218 0.91616 0.84512 0.83222 0.91088 0.91325 0.91397 0.91783 0.93366 0.93516 0.93625 0.94472 0.95391 0.84810 0.85482 0.85632 0.85864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.27 18.54 41.84 0.78 -4.50 16 2 C 0.26 2.80 14.24 -22.47 -0.32 2.48 16 3 C -0.04 -0.43 5.91 -104.56 -0.62 -1.05 16 4 C -0.04 -0.31 9.74 -39.11 -0.38 -0.70 16 5 C -0.11 -1.07 9.25 -40.12 -0.37 -1.44 16 6 C -0.03 -0.32 5.88 -104.54 -0.61 -0.94 16 7 C 0.09 1.02 4.80 36.01 0.17 1.19 16 8 O -0.38 -5.28 8.54 -35.23 -0.30 -5.58 16 9 C 0.07 1.21 3.51 -24.58 -0.09 1.13 16 10 H 0.07 1.08 7.86 -51.93 -0.41 0.68 16 11 C -0.14 -2.48 6.69 -24.84 -0.17 -2.65 16 12 C 0.18 4.19 5.38 -3.01 -0.02 4.17 16 13 N -0.60 -15.12 3.39 -170.01 -0.58 -15.70 16 14 C -0.23 -6.30 10.28 -15.06 -0.15 -6.45 16 15 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 16 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 17 N -0.92 -26.63 10.31 55.49 0.57 -26.06 16 18 Si 0.91 21.72 29.55 -169.99 -5.02 16.70 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C 0.12 2.38 6.97 -2.53 -0.02 2.36 16 23 C -0.05 -0.47 5.74 -106.87 -0.61 -1.08 16 24 C -0.10 -0.79 9.39 -39.46 -0.37 -1.16 16 25 C -0.12 -0.84 9.94 -39.94 -0.40 -1.24 16 26 C -0.10 -0.74 9.96 -39.89 -0.40 -1.14 16 27 C -0.11 -0.99 9.44 -39.61 -0.37 -1.37 16 28 C -0.01 -0.10 5.90 -104.77 -0.62 -0.72 16 29 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 30 H 0.15 1.54 6.85 -52.49 -0.36 1.18 16 31 H 0.07 0.74 8.05 -51.93 -0.42 0.32 16 32 H 0.07 0.66 8.03 -51.93 -0.42 0.24 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.05 1.24 7.38 -51.93 -0.38 0.86 16 36 H 0.05 1.22 7.50 -51.93 -0.39 0.83 16 37 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 38 H 0.04 0.71 8.14 -51.92 -0.42 0.29 16 39 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.13 0.90 7.00 -52.49 -0.37 0.53 16 41 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 42 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 43 H 0.12 1.00 7.31 -52.49 -0.38 0.61 16 LS Contribution 363.04 15.07 5.47 5.47 Total: -1.00 -31.11 363.04 -10.15 -41.27 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -5.63 Total: -2.69 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -5.44 Total: -8.91 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: 0.77 Total: -46.26 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: -0.30 Total: -5.58 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.11 -10.15 -41.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224028498.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.526 kcal (2) G-P(sol) polarization free energy of solvation -31.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds