Wall clock time and date at job start Tue Mar 31 2020 13:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.38915 * 120.69860 * 88.73405 * 3 2 1 5 5 C 1.38828 * 120.57110 * 179.68638 * 4 3 2 6 6 C 1.36123 * 121.83900 * 0.58214 * 5 4 3 7 7 C 1.50704 * 119.66205 * 179.71380 * 6 5 4 8 8 O 1.42902 * 109.47051 * 359.72585 * 7 6 5 9 9 C 1.42900 * 113.99920 * 179.97438 * 8 7 6 10 10 H 1.09002 * 110.88624 * 330.70359 * 9 8 7 11 11 C 1.55156 * 111.00522 * 206.81910 * 9 8 7 12 12 C 1.54428 * 102.89529 * 206.40890 * 11 9 8 13 13 N 1.47023 * 107.28154 * 22.18672 * 12 11 9 14 14 C 1.36933 * 125.65042 * 181.02400 * 13 12 11 15 15 H 1.07992 * 120.00307 * 180.02562 * 14 13 12 16 16 C 1.38816 * 119.99687 * 0.04032 * 14 13 12 17 17 N 1.31619 * 119.99939 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99726 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47031 * 60.00264 * 18 16 14 20 20 H 1.48505 * 109.46983 * 180.02562 * 18 16 14 21 21 H 1.48507 * 109.47077 * 300.00041 * 18 16 14 22 22 C 1.47430 * 108.69895 * 1.06294 * 13 12 11 23 23 C 1.40481 * 120.67130 * 359.43686 * 6 5 4 24 24 C 1.40563 * 121.34608 * 180.27641 * 23 6 5 25 25 C 1.36138 * 119.62867 * 179.97438 * 24 23 6 26 26 C 1.39294 * 121.01300 * 0.04212 * 25 24 23 27 27 C 1.36302 * 120.91182 * 359.97438 * 26 25 24 28 28 C 1.40010 * 119.61129 * 359.97438 * 27 26 25 29 29 H 1.07999 * 119.71592 * 359.97438 * 4 3 2 30 30 H 1.07990 * 119.08172 * 180.29929 * 5 4 3 31 31 H 1.09000 * 109.46968 * 239.73033 * 7 6 5 32 32 H 1.08997 * 109.47163 * 119.72613 * 7 6 5 33 33 H 1.09001 * 110.72614 * 324.75375 * 11 9 8 34 34 H 1.09002 * 110.71438 * 88.02473 * 11 9 8 35 35 H 1.08996 * 109.87511 * 262.77039 * 12 11 9 36 36 H 1.08994 * 110.00498 * 141.68055 * 12 11 9 37 37 H 0.97004 * 119.99325 * 179.97438 * 17 16 14 38 38 H 1.09008 * 110.36125 * 217.02920 * 22 13 12 39 39 H 1.08997 * 110.36558 * 94.70928 * 22 13 12 40 40 H 1.07999 * 120.18499 * 359.95380 * 24 23 6 41 41 H 1.08001 * 119.49442 * 179.97438 * 25 24 23 42 42 H 1.08006 * 119.54802 * 179.97438 * 26 25 24 43 43 H 1.08001 * 120.19538 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2772 -0.0254 -1.1942 5 6 4.6655 -0.0182 -1.1913 6 6 5.3810 0.0026 -0.0335 7 6 6.8871 0.0030 -0.0874 8 8 7.3149 -0.0267 -1.4506 9 6 8.7345 -0.0282 -1.6143 10 1 9.2216 0.4894 -0.7879 11 6 9.1379 0.5958 -2.9764 12 6 10.4939 -0.0794 -3.2767 13 7 10.5408 -1.3285 -2.5026 14 6 11.5865 -2.2122 -2.4760 15 1 11.5231 -3.1058 -1.8729 16 6 12.7282 -1.9591 -3.2240 17 7 12.8057 -0.8696 -3.9583 18 14 14.1545 -3.1649 -3.1882 19 1 13.6941 -4.4907 -3.6736 20 1 15.2451 -2.6677 -4.0648 21 1 14.6582 -3.2946 -1.7972 22 6 9.2750 -1.4725 -1.7606 23 6 4.7299 0.0294 1.2110 24 6 5.4546 0.0568 2.4151 25 6 4.7877 0.0829 3.6016 26 6 3.3954 0.0820 3.6425 27 6 2.6612 0.0554 2.4944 28 6 3.3141 0.0292 1.2562 29 1 2.7440 -0.0468 -2.1331 30 1 5.1925 -0.0340 -2.1337 31 1 7.2696 -0.8753 0.4326 32 1 7.2676 0.9042 0.3932 33 1 8.4057 0.3496 -3.7455 34 1 9.2555 1.6757 -2.8861 35 1 11.3097 0.5761 -2.9722 36 1 10.5731 -0.2998 -4.3412 37 1 13.6037 -0.6927 -4.4807 38 1 9.4583 -1.9102 -0.7793 39 1 8.5721 -2.0853 -2.3250 40 1 6.5345 0.0569 2.3990 41 1 5.3468 0.1035 4.5255 42 1 2.8905 0.1025 4.5971 43 1 1.5821 0.0554 2.5396 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224028498.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:31 Heat of formation + Delta-G solvation = 42.076861 kcal Electronic energy + Delta-G solvation = -25344.421562 eV Core-core repulsion = 21740.753389 eV Total energy + Delta-G solvation = -3603.668173 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.47193 -39.82281 -38.03231 -37.90874 -36.83947 -34.46768 -33.79868 -31.37690 -31.17764 -30.57714 -28.87830 -27.70503 -26.20373 -24.38512 -23.97635 -22.86191 -22.00228 -21.74523 -19.66281 -18.94356 -18.35888 -18.00383 -17.29502 -16.81554 -16.58973 -16.34932 -15.83630 -15.49424 -15.25709 -15.16542 -14.90728 -14.77269 -14.51126 -14.23199 -14.08684 -14.01945 -13.78608 -13.68529 -13.47354 -13.13448 -12.95897 -12.78633 -12.71791 -12.41342 -12.07654 -12.06637 -12.04095 -11.89469 -11.77862 -11.68557 -11.35677 -10.86019 -10.67964 -10.35613 -9.64125 -8.88899 -8.85861 -7.83258 -5.19424 -0.82983 0.03534 0.69572 1.48450 1.51227 1.51538 1.57785 1.74068 2.28975 2.43802 2.59371 2.76369 3.09519 3.35556 3.58864 3.72397 3.79102 3.89984 3.91100 3.97619 4.07103 4.12327 4.25513 4.34491 4.39776 4.45799 4.54494 4.59798 4.68398 4.68676 4.78589 4.87024 5.02226 5.07153 5.09569 5.11167 5.15677 5.25872 5.35993 5.47089 5.55063 5.63619 5.68090 5.70552 5.77820 5.97668 6.19033 6.34831 6.37461 7.11655 7.78555 8.42207 9.26814 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.022135 B = 0.002381 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.673162 B =11755.681765 C =12462.134740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C 0.283 3.717 3 C -0.056 4.056 4 C -0.028 4.028 5 C -0.119 4.119 6 C -0.033 4.033 7 C 0.089 3.911 8 O -0.377 6.377 9 C 0.096 3.904 10 H 0.085 0.915 11 C -0.125 4.125 12 C 0.184 3.816 13 N -0.626 5.626 14 C -0.244 4.244 15 H 0.083 0.917 16 C -0.066 4.066 17 N -0.951 5.951 18 Si 0.979 3.021 19 H -0.279 1.279 20 H -0.295 1.295 21 H -0.274 1.274 22 C 0.113 3.887 23 C -0.061 4.061 24 C -0.104 4.104 25 C -0.117 4.117 26 C -0.096 4.096 27 C -0.132 4.132 28 C -0.021 4.021 29 H 0.156 0.844 30 H 0.146 0.854 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.018 0.982 36 H 0.008 0.992 37 H 0.247 0.753 38 H 0.048 0.952 39 H 0.023 0.977 40 H 0.149 0.851 41 H 0.153 0.847 42 H 0.150 0.850 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.496 4.768 14.625 23.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.136 5.136 2 C -0.030 4.030 3 C -0.059 4.059 4 C -0.049 4.049 5 C -0.137 4.137 6 C -0.034 4.034 7 C 0.013 3.987 8 O -0.295 6.295 9 C 0.037 3.963 10 H 0.102 0.898 11 C -0.163 4.163 12 C 0.059 3.941 13 N -0.354 5.354 14 C -0.372 4.372 15 H 0.101 0.899 16 C -0.259 4.259 17 N -0.600 5.600 18 Si 0.807 3.193 19 H -0.205 1.205 20 H -0.221 1.221 21 H -0.200 1.200 22 C -0.013 4.013 23 C -0.061 4.061 24 C -0.122 4.122 25 C -0.134 4.134 26 C -0.113 4.113 27 C -0.150 4.150 28 C -0.023 4.023 29 H 0.173 0.827 30 H 0.163 0.837 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.092 0.908 34 H 0.107 0.893 35 H 0.036 0.964 36 H 0.026 0.974 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.041 0.959 40 H 0.167 0.833 41 H 0.171 0.829 42 H 0.167 0.833 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -19.216 4.745 14.393 24.473 hybrid contribution 1.434 -0.660 -0.357 1.618 sum -17.783 4.086 14.036 23.020 Atomic orbital electron populations 1.81275 1.12855 1.10944 1.08496 1.25574 0.92412 0.92448 0.92591 1.16972 0.83326 1.11194 0.94415 1.21489 0.94014 0.92313 0.97065 1.20658 0.93024 1.00353 0.99661 1.19760 0.94809 0.96052 0.92763 1.21509 0.90472 1.02635 0.84076 1.87814 1.21149 1.95029 1.25528 1.23056 0.80063 0.95086 0.98075 0.89755 1.22828 0.96724 1.00311 0.96472 1.20943 0.92807 0.86371 0.93934 1.44652 1.14458 1.23312 1.52989 1.19420 0.93395 1.01253 1.23171 0.89896 1.25665 1.00961 0.99766 0.99516 1.70168 1.28738 1.27564 1.33556 0.85150 0.78488 0.78125 0.77547 1.20474 1.22120 1.20022 1.22098 0.87398 0.96502 0.95253 1.17749 0.91765 1.02940 0.93616 1.21380 1.01100 0.98541 0.91129 1.21242 0.94460 0.98683 0.99048 1.21280 0.94482 0.96694 0.98888 1.20976 1.00098 1.02155 0.91774 1.18750 0.92123 0.99417 0.91975 0.82683 0.83678 0.90268 0.89372 0.90819 0.89287 0.96392 0.97407 0.94335 0.93417 0.95917 0.83316 0.82916 0.83263 0.85910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -11.42 18.54 19.00 0.35 -11.07 16 2 C 0.28 5.92 14.24 88.33 1.26 7.18 16 3 C -0.06 -1.02 5.91 -19.82 -0.12 -1.14 16 4 C -0.03 -0.45 9.74 22.57 0.22 -0.23 16 5 C -0.12 -2.20 9.25 21.92 0.20 -1.99 16 6 C -0.03 -0.61 5.88 -19.81 -0.12 -0.73 16 7 C 0.09 1.69 4.80 71.24 0.34 2.03 16 8 O -0.38 -9.65 8.54 -148.98 -1.27 -10.92 16 9 C 0.10 2.97 3.51 31.98 0.11 3.08 16 10 H 0.08 2.39 7.86 -2.39 -0.02 2.37 16 11 C -0.13 -4.35 6.69 31.82 0.21 -4.14 16 12 C 0.18 8.88 5.38 86.76 0.47 9.35 16 13 N -0.63 -31.55 3.39 -691.78 -2.35 -33.90 16 14 C -0.24 -13.44 10.28 84.04 0.86 -12.57 16 15 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 16 C -0.07 -3.71 5.49 84.86 0.47 -3.25 16 17 N -0.95 -56.54 10.31 21.65 0.22 -56.31 16 18 Si 0.98 44.99 29.55 68.60 2.03 47.01 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 20 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 22 C 0.11 4.41 6.97 86.85 0.61 5.02 16 23 C -0.06 -1.06 5.74 -21.32 -0.12 -1.18 16 24 C -0.10 -1.41 9.39 22.35 0.21 -1.20 16 25 C -0.12 -1.30 9.94 22.03 0.22 -1.08 16 26 C -0.10 -1.14 9.96 22.07 0.22 -0.92 16 27 C -0.13 -2.09 9.44 22.25 0.21 -1.88 16 28 C -0.02 -0.38 5.90 -19.96 -0.12 -0.50 16 29 H 0.16 1.85 8.06 -2.91 -0.02 1.83 16 30 H 0.15 2.80 6.85 -2.92 -0.02 2.78 16 31 H 0.08 1.40 8.05 -2.39 -0.02 1.39 16 32 H 0.09 1.37 8.03 -2.39 -0.02 1.35 16 33 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 35 H 0.02 0.95 7.38 -2.39 -0.02 0.94 16 36 H 0.01 0.42 7.50 -2.39 -0.02 0.40 16 37 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 38 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 39 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.15 1.50 7.00 -2.91 -0.02 1.48 16 41 H 0.15 0.90 8.06 -2.91 -0.02 0.87 16 42 H 0.15 1.02 8.06 -2.91 -0.02 0.99 16 43 H 0.12 1.89 7.31 -2.91 -0.02 1.87 16 Total: -1.00 -68.61 363.04 5.14 -63.47 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: 1.03 Total: 5.88 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: 5.13 Total: -4.17 kcal Atomic # 7 Polarization: -99.51 SS G_CDS: -1.77 Total: -101.28 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: -1.27 Total: -10.92 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -68.61 5.14 -63.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224028498.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.545 kcal (2) G-P(sol) polarization free energy of solvation -68.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds