Wall clock time and date at job start Tue Mar 31 2020 13:26:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.38922 * 120.69814 * 148.66280 * 3 2 1 5 5 C 1.38823 * 120.57026 * 179.68690 * 4 3 2 6 6 C 1.36116 * 121.84339 * 0.58348 * 5 4 3 7 7 C 1.50703 * 119.66331 * 179.71593 * 6 5 4 8 8 O 1.42894 * 109.47334 * 359.72322 * 7 6 5 9 9 C 1.42901 * 114.00234 * 180.02562 * 8 7 6 10 10 C 1.53507 * 114.17301 * 149.99598 * 9 8 7 11 11 N 1.47489 * 87.92897 * 87.81628 * 10 9 8 12 12 C 1.46904 * 110.99948 * 138.70309 * 11 10 9 13 13 C 1.50696 * 109.46794 * 169.99650 * 12 11 10 14 14 H 1.07999 * 120.00319 * 0.02562 * 13 12 11 15 15 C 1.37885 * 119.99717 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99913 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 119.99766 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 C 1.47481 * 87.83412 * 27.01215 * 11 10 9 22 22 C 1.40482 * 120.66503 * 359.43228 * 6 5 4 23 23 C 1.40571 * 121.33296 * 180.28095 * 22 6 5 24 24 C 1.36139 * 119.62737 * 179.97438 * 23 22 6 25 25 C 1.39296 * 121.00838 * 359.97438 * 24 23 22 26 26 C 1.36304 * 120.91655 * 0.02920 * 25 24 23 27 27 C 1.40015 * 119.61134 * 359.95400 * 26 25 24 28 28 H 1.07997 * 119.71036 * 359.97018 * 4 3 2 29 29 H 1.08000 * 119.07350 * 180.29443 * 5 4 3 30 30 H 1.09001 * 109.46674 * 239.72044 * 7 6 5 31 31 H 1.09001 * 109.46492 * 119.72496 * 7 6 5 32 32 H 1.09007 * 113.25096 * 17.04906 * 9 8 7 33 33 H 1.08997 * 113.47543 * 333.05437 * 10 9 8 34 34 H 1.08997 * 113.47777 * 202.57513 * 10 9 8 35 35 H 1.09005 * 109.47078 * 49.99935 * 12 11 10 36 36 H 1.09002 * 109.47005 * 290.00151 * 12 11 10 37 37 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 38 38 H 1.08990 * 113.47671 * 87.75950 * 21 11 10 39 39 H 1.09001 * 113.47203 * 218.22506 * 21 11 10 40 40 H 1.08002 * 120.18042 * 0.02562 * 23 22 6 41 41 H 1.07998 * 119.49724 * 179.97438 * 24 23 22 42 42 H 1.08001 * 119.54278 * 180.02562 * 25 24 23 43 43 H 1.08002 * 120.19196 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2767 1.0212 -0.6213 5 6 4.6649 1.0226 -0.6141 6 6 5.3810 0.0313 -0.0163 7 6 6.8870 0.0786 -0.0435 8 8 7.3143 1.2435 -0.7524 9 6 8.7338 1.3842 -0.8373 10 6 9.2190 2.1110 -2.0993 11 7 9.0637 3.3798 -1.3636 12 6 10.1847 4.2885 -1.6386 13 6 9.8761 5.6517 -1.0752 14 1 8.9410 5.8255 -0.5636 15 6 10.7881 6.6767 -1.2119 16 7 10.5190 7.8663 -0.7198 17 14 12.4058 6.3757 -2.0961 18 1 13.4293 5.9287 -1.1173 19 1 12.2173 5.3260 -3.1295 20 1 12.8569 7.6333 -2.7445 21 6 9.2911 2.6213 -0.1194 22 6 4.7302 -1.0323 0.6308 23 6 5.4557 -2.0603 1.2576 24 6 4.7895 -3.0743 1.8751 25 6 3.3971 -3.1099 1.8966 26 6 2.6623 -2.1297 1.2989 27 6 3.3145 -1.0714 0.6548 28 1 2.7430 1.8229 -1.1101 29 1 5.1914 1.8305 -1.1003 30 1 7.2694 -0.8115 -0.5431 31 1 7.2678 0.1143 0.9772 32 1 9.2715 0.4615 -0.6190 33 1 8.5386 2.0135 -2.9452 34 1 10.2527 1.8844 -2.3605 35 1 10.3340 4.3657 -2.7156 36 1 11.0904 3.8994 -1.1732 37 1 11.1608 8.5873 -0.8157 38 1 10.3439 2.5309 0.1477 39 1 8.6717 2.9563 0.7127 40 1 6.5356 -2.0453 1.2500 41 1 5.3490 -3.8633 2.3556 42 1 2.8928 -3.9253 2.3937 43 1 1.5832 -2.1691 1.3223 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224028929.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:26 Heat of formation + Delta-G solvation = 78.169296 kcal Electronic energy + Delta-G solvation = -25064.319582 eV Core-core repulsion = 21462.216494 eV Total energy + Delta-G solvation = -3602.103088 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.82816 -39.74455 -37.39277 -37.16684 -35.98060 -33.42986 -32.70783 -30.75354 -30.24812 -29.52553 -27.03466 -25.59093 -25.24119 -23.76191 -23.34250 -22.15468 -21.35726 -19.67164 -18.87943 -17.74284 -17.11937 -16.80352 -16.45591 -15.99567 -15.67867 -15.19580 -14.81394 -14.53554 -14.42832 -14.23951 -14.05780 -13.97815 -13.55919 -13.45267 -13.29135 -13.06522 -12.80948 -12.53090 -12.42716 -12.34678 -12.14256 -11.71982 -11.38779 -11.36496 -11.25961 -11.04670 -10.84408 -10.53882 -10.09438 -10.00808 -9.79652 -9.37519 -9.34990 -9.01330 -8.59159 -8.19530 -7.97463 -6.05885 -4.03194 -0.15053 0.66455 1.32969 2.35912 2.46018 3.00389 3.24573 3.32827 3.33545 3.34587 3.54419 3.75756 4.22243 4.39435 4.40999 4.48699 4.57703 4.62982 4.67180 4.77716 4.90289 4.99328 5.04043 5.13447 5.20267 5.22120 5.24467 5.31535 5.47415 5.61639 5.66997 5.75426 5.77336 5.92129 5.97910 5.99647 6.07315 6.10506 6.20331 6.33508 6.36560 6.47595 6.57023 6.66736 7.19853 7.25116 7.31358 7.68485 7.83509 8.62806 9.05755 9.55173 11.07576 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.020177 B = 0.002353 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.414249 B =11898.158763 C =12836.413932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C 0.262 3.738 3 C -0.042 4.042 4 C -0.035 4.035 5 C -0.102 4.102 6 C -0.038 4.038 7 C 0.093 3.907 8 O -0.344 6.344 9 C 0.057 3.943 10 C -0.010 4.010 11 N -0.443 5.443 12 C 0.125 3.875 13 C -0.505 4.505 14 H 0.081 0.919 15 C 0.066 3.934 16 N -0.900 5.900 17 Si 0.875 3.125 18 H -0.278 1.278 19 H -0.268 1.268 20 H -0.285 1.285 21 C -0.009 4.009 22 C -0.047 4.047 23 C -0.099 4.099 24 C -0.117 4.117 25 C -0.104 4.104 26 C -0.112 4.112 27 C -0.012 4.012 28 H 0.139 0.861 29 H 0.154 0.846 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.027 0.973 36 H -0.005 1.005 37 H 0.263 0.737 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.132 0.868 41 H 0.126 0.874 42 H 0.126 0.874 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.167 -24.966 3.567 26.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.096 5.096 2 C -0.052 4.052 3 C -0.045 4.045 4 C -0.056 4.056 5 C -0.119 4.119 6 C -0.039 4.039 7 C 0.017 3.983 8 O -0.263 6.263 9 C -0.001 4.001 10 C -0.140 4.140 11 N -0.166 5.166 12 C -0.002 4.002 13 C -0.543 4.543 14 H 0.099 0.901 15 C -0.135 4.135 16 N -0.539 5.539 17 Si 0.702 3.298 18 H -0.203 1.203 19 H -0.193 1.193 20 H -0.211 1.211 21 C -0.139 4.139 22 C -0.047 4.047 23 C -0.117 4.117 24 C -0.135 4.135 25 C -0.122 4.122 26 C -0.130 4.130 27 C -0.014 4.014 28 H 0.157 0.843 29 H 0.171 0.829 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.045 0.955 36 H 0.012 0.988 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.103 0.897 40 H 0.150 0.850 41 H 0.144 0.856 42 H 0.144 0.856 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -11.576 -24.184 3.403 27.027 hybrid contribution 2.355 -0.471 -0.234 2.413 sum -9.221 -24.656 3.170 26.514 Atomic orbital electron populations 1.81264 1.11868 1.07790 1.08698 1.25464 0.92389 0.93714 0.93673 1.16940 0.84012 0.98180 1.05404 1.21391 0.94368 0.95646 0.94237 1.20726 0.92703 0.99488 0.99028 1.19645 0.94861 0.93624 0.95782 1.21338 0.90546 0.89341 0.97118 1.87939 1.20757 1.42502 1.75060 1.23284 0.81239 0.96941 0.98651 1.24100 0.99836 0.92595 0.97458 1.69008 1.40344 1.05390 1.01816 1.20760 0.88077 0.94525 0.96829 1.20965 1.05408 0.91886 1.36067 0.90135 1.24941 0.98092 0.95071 0.95396 1.69898 1.36093 1.01779 1.46125 0.86867 0.84486 0.77944 0.80467 1.20344 1.19280 1.21071 1.24259 0.99847 0.92767 0.96987 1.17630 0.91765 0.95605 0.99710 1.21083 1.00045 0.93470 0.97087 1.20883 0.94399 0.98716 0.99495 1.20926 0.94143 0.98487 0.98641 1.20876 0.99916 0.93979 0.98241 1.18583 0.91840 0.93706 0.97239 0.84325 0.82854 0.91330 0.91127 0.90703 0.89689 0.91222 0.95478 0.98762 0.92662 0.91116 0.89719 0.84995 0.85563 0.85644 0.85826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.35 18.54 41.84 0.78 -4.57 16 2 C 0.26 2.85 14.25 -22.48 -0.32 2.53 16 3 C -0.04 -0.41 5.91 -104.56 -0.62 -1.03 16 4 C -0.04 -0.32 9.74 -39.11 -0.38 -0.70 16 5 C -0.10 -1.03 9.25 -40.13 -0.37 -1.41 16 6 C -0.04 -0.37 5.88 -104.54 -0.61 -0.98 16 7 C 0.09 0.85 4.78 36.01 0.17 1.03 16 8 O -0.34 -4.43 8.78 -35.23 -0.31 -4.74 16 9 C 0.06 0.75 4.65 -26.20 -0.12 0.63 16 10 C -0.01 -0.16 7.52 -7.54 -0.06 -0.22 16 11 N -0.44 -9.07 6.32 -246.10 -1.55 -10.63 16 12 C 0.13 2.98 3.64 -4.98 -0.02 2.96 16 13 C -0.50 -14.48 9.94 -34.44 -0.34 -14.82 16 14 H 0.08 2.56 8.06 -52.49 -0.42 2.13 16 15 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 16 N -0.90 -27.67 13.96 55.43 0.77 -26.89 16 17 Si 0.88 21.21 27.47 -169.99 -4.67 16.54 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 C -0.01 -0.15 7.56 -7.54 -0.06 -0.21 16 22 C -0.05 -0.42 5.74 -106.87 -0.61 -1.04 16 23 C -0.10 -0.71 9.39 -39.46 -0.37 -1.08 16 24 C -0.12 -0.74 9.94 -39.94 -0.40 -1.14 16 25 C -0.10 -0.70 9.96 -39.88 -0.40 -1.10 16 26 C -0.11 -0.93 9.44 -39.61 -0.37 -1.31 16 27 C -0.01 -0.11 5.90 -104.77 -0.62 -0.73 16 28 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 29 H 0.15 1.73 6.85 -52.49 -0.36 1.37 16 30 H 0.07 0.50 8.05 -51.93 -0.42 0.08 16 31 H 0.07 0.57 8.05 -51.93 -0.42 0.16 16 32 H 0.08 0.73 7.88 -51.93 -0.41 0.32 16 33 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.07 0.99 7.91 -51.93 -0.41 0.58 16 35 H 0.03 0.66 7.14 -51.93 -0.37 0.28 16 36 H -0.01 -0.12 6.73 -51.93 -0.35 -0.47 16 37 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.07 1.14 7.42 -51.93 -0.39 0.75 16 39 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 40 H 0.13 0.68 6.99 -52.49 -0.37 0.31 16 41 H 0.13 0.51 8.06 -52.49 -0.42 0.08 16 42 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 43 H 0.12 0.97 7.31 -52.49 -0.38 0.59 16 LS Contribution 365.95 15.07 5.51 5.51 Total: -1.00 -33.31 365.95 -10.64 -43.95 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -5.58 Total: -2.37 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: -5.60 Total: -16.79 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: -0.01 Total: -42.10 kcal Atomic # 8 Polarization: -4.43 SS G_CDS: -0.31 Total: -4.74 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.54 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.31 -10.64 -43.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224028929.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.117 kcal (2) G-P(sol) polarization free energy of solvation -33.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds