Wall clock time and date at job start Tue Mar 31 2020 13:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.38922 * 120.69814 * 148.66280 * 3 2 1 5 5 C 1.38823 * 120.57026 * 179.68690 * 4 3 2 6 6 C 1.36116 * 121.84339 * 0.58348 * 5 4 3 7 7 C 1.50703 * 119.66331 * 179.71593 * 6 5 4 8 8 O 1.42894 * 109.47334 * 359.72322 * 7 6 5 9 9 C 1.42901 * 114.00234 * 180.02562 * 8 7 6 10 10 C 1.53507 * 114.17301 * 149.99598 * 9 8 7 11 11 N 1.47489 * 87.92897 * 87.81628 * 10 9 8 12 12 C 1.46904 * 110.99948 * 138.70309 * 11 10 9 13 13 C 1.50696 * 109.46794 * 169.99650 * 12 11 10 14 14 H 1.07999 * 120.00319 * 0.02562 * 13 12 11 15 15 C 1.37885 * 119.99717 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99913 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 119.99766 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 C 1.47481 * 87.83412 * 27.01215 * 11 10 9 22 22 C 1.40482 * 120.66503 * 359.43228 * 6 5 4 23 23 C 1.40571 * 121.33296 * 180.28095 * 22 6 5 24 24 C 1.36139 * 119.62737 * 179.97438 * 23 22 6 25 25 C 1.39296 * 121.00838 * 359.97438 * 24 23 22 26 26 C 1.36304 * 120.91655 * 0.02920 * 25 24 23 27 27 C 1.40015 * 119.61134 * 359.95400 * 26 25 24 28 28 H 1.07997 * 119.71036 * 359.97018 * 4 3 2 29 29 H 1.08000 * 119.07350 * 180.29443 * 5 4 3 30 30 H 1.09001 * 109.46674 * 239.72044 * 7 6 5 31 31 H 1.09001 * 109.46492 * 119.72496 * 7 6 5 32 32 H 1.09007 * 113.25096 * 17.04906 * 9 8 7 33 33 H 1.08997 * 113.47543 * 333.05437 * 10 9 8 34 34 H 1.08997 * 113.47777 * 202.57513 * 10 9 8 35 35 H 1.09005 * 109.47078 * 49.99935 * 12 11 10 36 36 H 1.09002 * 109.47005 * 290.00151 * 12 11 10 37 37 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 38 38 H 1.08990 * 113.47671 * 87.75950 * 21 11 10 39 39 H 1.09001 * 113.47203 * 218.22506 * 21 11 10 40 40 H 1.08002 * 120.18042 * 0.02562 * 23 22 6 41 41 H 1.07998 * 119.49724 * 179.97438 * 24 23 22 42 42 H 1.08001 * 119.54278 * 180.02562 * 25 24 23 43 43 H 1.08002 * 120.19196 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2767 1.0212 -0.6213 5 6 4.6649 1.0226 -0.6141 6 6 5.3810 0.0313 -0.0163 7 6 6.8870 0.0786 -0.0435 8 8 7.3143 1.2435 -0.7524 9 6 8.7338 1.3842 -0.8373 10 6 9.2190 2.1110 -2.0993 11 7 9.0637 3.3798 -1.3636 12 6 10.1847 4.2885 -1.6386 13 6 9.8761 5.6517 -1.0752 14 1 8.9410 5.8255 -0.5636 15 6 10.7881 6.6767 -1.2119 16 7 10.5190 7.8663 -0.7198 17 14 12.4058 6.3757 -2.0961 18 1 13.4293 5.9287 -1.1173 19 1 12.2173 5.3260 -3.1295 20 1 12.8569 7.6333 -2.7445 21 6 9.2911 2.6213 -0.1194 22 6 4.7302 -1.0323 0.6308 23 6 5.4557 -2.0603 1.2576 24 6 4.7895 -3.0743 1.8751 25 6 3.3971 -3.1099 1.8966 26 6 2.6623 -2.1297 1.2989 27 6 3.3145 -1.0714 0.6548 28 1 2.7430 1.8229 -1.1101 29 1 5.1914 1.8305 -1.1003 30 1 7.2694 -0.8115 -0.5431 31 1 7.2678 0.1143 0.9772 32 1 9.2715 0.4615 -0.6190 33 1 8.5386 2.0135 -2.9452 34 1 10.2527 1.8844 -2.3605 35 1 10.3340 4.3657 -2.7156 36 1 11.0904 3.8994 -1.1732 37 1 11.1608 8.5873 -0.8157 38 1 10.3439 2.5309 0.1477 39 1 8.6717 2.9563 0.7127 40 1 6.5356 -2.0453 1.2500 41 1 5.3490 -3.8633 2.3556 42 1 2.8928 -3.9253 2.3937 43 1 1.5832 -2.1691 1.3223 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224028929.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:25 Heat of formation + Delta-G solvation = 56.658318 kcal Electronic energy + Delta-G solvation = -25065.252368 eV Core-core repulsion = 21462.216494 eV Total energy + Delta-G solvation = -3603.035874 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.50741 -40.94494 -38.22798 -38.03309 -36.84532 -34.92501 -34.07412 -31.60984 -31.37330 -30.55948 -27.92594 -27.04016 -26.63235 -24.37717 -24.00550 -23.16359 -22.82078 -20.83358 -19.62542 -18.94493 -18.37047 -17.89488 -17.38994 -16.92624 -16.58502 -16.46821 -15.96389 -15.58707 -15.48666 -15.15482 -14.98380 -14.85177 -14.67034 -14.51251 -14.32940 -14.12487 -14.06666 -13.65199 -13.52454 -13.35957 -13.13273 -12.98298 -12.70403 -12.35889 -12.20371 -11.98889 -11.93083 -11.74062 -11.71774 -11.44642 -11.38071 -10.82722 -10.78300 -10.30354 -9.64284 -9.46508 -8.85572 -8.28086 -6.32391 -0.83433 0.03332 0.69930 1.34319 1.37967 1.48585 1.49305 1.73076 2.28126 2.35036 2.46955 2.75187 3.04451 3.09579 3.41504 3.52764 3.61720 3.79542 3.87880 3.98160 4.06671 4.07548 4.34384 4.37073 4.41033 4.53068 4.56305 4.59545 4.59791 4.66918 4.68843 4.74018 4.81281 4.85507 4.95003 5.03215 5.10224 5.14838 5.24682 5.35461 5.53088 5.56002 5.63030 5.70699 5.81011 5.98929 6.04339 6.34426 6.39520 6.64393 6.74261 7.31166 8.89448 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.020177 B = 0.002353 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.414249 B =11898.158763 C =12836.413932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C 0.282 3.718 3 C -0.057 4.057 4 C -0.032 4.032 5 C -0.124 4.124 6 C -0.032 4.032 7 C 0.088 3.912 8 O -0.369 6.369 9 C 0.086 3.914 10 C -0.011 4.011 11 N -0.488 5.488 12 C 0.137 3.863 13 C -0.518 4.518 14 H 0.025 0.975 15 C 0.001 3.999 16 N -0.952 5.952 17 Si 0.955 3.045 18 H -0.262 1.262 19 H -0.246 1.246 20 H -0.283 1.283 21 C -0.019 4.019 22 C -0.060 4.060 23 C -0.099 4.099 24 C -0.116 4.116 25 C -0.095 4.095 26 C -0.134 4.134 27 C -0.021 4.021 28 H 0.147 0.853 29 H 0.137 0.863 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.126 0.874 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.026 0.974 36 H 0.008 0.992 37 H 0.267 0.733 38 H 0.081 0.919 39 H 0.064 0.936 40 H 0.158 0.842 41 H 0.157 0.843 42 H 0.149 0.851 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.596 -28.835 3.504 29.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.136 5.136 2 C -0.031 4.031 3 C -0.060 4.060 4 C -0.053 4.053 5 C -0.142 4.142 6 C -0.033 4.033 7 C 0.013 3.987 8 O -0.287 6.287 9 C 0.028 3.972 10 C -0.140 4.140 11 N -0.211 5.211 12 C 0.009 3.991 13 C -0.557 4.557 14 H 0.044 0.956 15 C -0.196 4.196 16 N -0.593 5.593 17 Si 0.778 3.222 18 H -0.187 1.187 19 H -0.169 1.169 20 H -0.209 1.209 21 C -0.148 4.148 22 C -0.060 4.060 23 C -0.116 4.116 24 C -0.134 4.134 25 C -0.113 4.113 26 C -0.152 4.152 27 C -0.023 4.023 28 H 0.165 0.835 29 H 0.155 0.845 30 H 0.118 0.882 31 H 0.106 0.894 32 H 0.143 0.857 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.044 0.956 36 H 0.026 0.974 37 H 0.076 0.924 38 H 0.099 0.901 39 H 0.082 0.918 40 H 0.176 0.824 41 H 0.175 0.825 42 H 0.167 0.833 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -9.028 -28.086 3.344 29.690 hybrid contribution 1.462 0.679 -0.102 1.615 sum -7.566 -27.407 3.242 28.617 Atomic orbital electron populations 1.81263 1.12862 1.09190 1.10278 1.25611 0.92478 0.92542 0.92505 1.16978 0.83306 0.99059 1.06685 1.21452 0.94249 0.95726 0.93885 1.20623 0.93001 0.99910 1.00650 1.19815 0.95432 0.93255 0.94761 1.21624 0.89977 0.89092 0.98051 1.87934 1.20750 1.44518 1.75542 1.23080 0.81712 0.97165 0.95253 1.24201 1.01288 0.90211 0.98306 1.68898 1.39403 1.07798 1.04976 1.20513 0.89800 0.92713 0.96082 1.21258 1.03459 0.95103 1.35853 0.95612 1.26008 1.02850 0.94435 0.96265 1.70081 1.38019 1.03153 1.48054 0.85600 0.78587 0.78416 0.79629 1.18678 1.16931 1.20901 1.24377 1.00479 0.94566 0.95394 1.17763 0.91585 0.96240 1.00441 1.21410 1.01339 0.92689 0.96199 1.21268 0.94255 0.99085 0.98749 1.21295 0.94738 0.98141 0.97107 1.20962 1.00050 0.94680 0.99544 1.18766 0.92397 0.93816 0.97344 0.83483 0.84539 0.88187 0.89430 0.85663 0.89673 0.89162 0.95643 0.97416 0.92445 0.90114 0.91755 0.82439 0.82539 0.83318 0.86218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -12.22 18.54 19.00 0.35 -11.86 16 2 C 0.28 6.41 14.25 88.33 1.26 7.67 16 3 C -0.06 -1.14 5.91 -19.82 -0.12 -1.25 16 4 C -0.03 -0.61 9.74 22.57 0.22 -0.39 16 5 C -0.12 -2.57 9.25 21.92 0.20 -2.37 16 6 C -0.03 -0.57 5.88 -19.81 -0.12 -0.68 16 7 C 0.09 1.33 4.78 71.24 0.34 1.67 16 8 O -0.37 -8.75 8.78 -148.98 -1.31 -10.06 16 9 C 0.09 1.97 4.65 30.94 0.14 2.12 16 10 C -0.01 -0.32 7.52 83.57 0.63 0.31 16 11 N -0.49 -19.86 6.32 -932.93 -5.89 -25.75 16 12 C 0.14 6.44 3.64 85.55 0.31 6.75 16 13 C -0.52 -30.80 9.94 25.60 0.25 -30.54 16 14 H 0.03 1.74 8.06 -2.91 -0.02 1.72 16 15 C 0.00 0.06 5.47 84.66 0.46 0.53 16 16 N -0.95 -60.64 13.96 21.45 0.30 -60.34 16 17 Si 0.96 43.49 27.47 68.60 1.88 45.37 16 18 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 19 H -0.25 -10.24 6.54 99.48 0.65 -9.59 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 21 C -0.02 -0.61 7.56 83.58 0.63 0.03 16 22 C -0.06 -0.97 5.74 -21.32 -0.12 -1.10 16 23 C -0.10 -1.05 9.39 22.35 0.21 -0.84 16 24 C -0.12 -1.01 9.94 22.04 0.22 -0.79 16 25 C -0.09 -1.02 9.96 22.07 0.22 -0.80 16 26 C -0.13 -2.10 9.44 22.25 0.21 -1.89 16 27 C -0.02 -0.39 5.90 -19.96 -0.12 -0.51 16 28 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 29 H 0.14 3.28 6.85 -2.91 -0.02 3.26 16 30 H 0.10 0.93 8.05 -2.39 -0.02 0.91 16 31 H 0.09 1.07 8.05 -2.39 -0.02 1.05 16 32 H 0.13 1.69 7.88 -2.38 -0.02 1.67 16 33 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.09 2.22 7.91 -2.39 -0.02 2.20 16 35 H 0.03 1.19 7.14 -2.38 -0.02 1.18 16 36 H 0.01 0.36 6.73 -2.39 -0.02 0.34 16 37 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 38 H 0.08 2.43 7.42 -2.39 -0.02 2.41 16 39 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.16 0.81 6.99 -2.91 -0.02 0.79 16 41 H 0.16 0.44 8.06 -2.91 -0.02 0.42 16 42 H 0.15 0.86 8.06 -2.91 -0.02 0.84 16 43 H 0.12 1.89 7.31 -2.91 -0.02 1.87 16 Total: -1.00 -77.41 365.95 1.15 -76.26 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: 0.97 Total: 8.49 kcal Atomic # 6 Polarization: -26.94 SS G_CDS: 4.84 Total: -22.10 kcal Atomic # 7 Polarization: -92.71 SS G_CDS: -5.24 Total: -97.95 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: -1.31 Total: -10.06 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.88 Total: 45.37 kcal Total: -77.41 1.15 -76.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224028929.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.917 kcal (2) G-P(sol) polarization free energy of solvation -77.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds