Wall clock time and date at job start Tue Mar 31 2020 13:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00315 * 2 1 4 4 H 1.48496 * 109.47276 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47115 * 300.00389 * 3 2 1 6 6 H 1.48497 * 109.47015 * 60.00209 * 3 2 1 7 7 C 1.37881 * 119.99754 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99990 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99897 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47037 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47183 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47183 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.47183 * 180.02562 * 12 11 10 14 14 O 1.42898 * 109.46900 * 179.97438 * 13 12 11 15 15 C 1.42905 * 113.99615 * 180.02562 * 14 13 12 16 16 C 1.53781 * 113.61093 * 247.49599 * 15 14 13 17 17 C 1.53779 * 87.08092 * 270.88543 * 16 15 14 18 18 C 1.50709 * 113.68928 * 220.01004 * 17 16 15 19 19 C 1.38235 * 120.00638 * 37.26005 * 18 17 16 20 20 C 1.38220 * 120.01193 * 179.76942 * 19 18 17 21 21 C 1.38264 * 120.02229 * 0.50851 * 20 19 18 22 22 C 1.38190 * 120.01659 * 359.74340 * 21 20 19 23 23 C 1.38327 * 120.00215 * 217.53746 * 18 17 16 24 24 Cl 1.73603 * 120.01917 * 359.95281 * 23 18 17 25 25 C 1.53777 * 87.08235 * 334.56833 * 17 16 15 26 26 H 0.97002 * 119.99301 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47115 * 60.00868 * 9 7 2 28 28 H 1.08996 * 109.47749 * 300.00383 * 9 7 2 29 29 H 1.08997 * 109.47207 * 59.99956 * 10 9 7 30 30 H 1.09009 * 109.46785 * 300.00239 * 10 9 7 31 31 H 1.08997 * 109.47353 * 59.99717 * 11 10 9 32 32 H 1.08993 * 109.46905 * 299.99921 * 11 10 9 33 33 H 1.08997 * 109.47207 * 59.99627 * 12 11 10 34 34 H 1.09009 * 109.46785 * 299.99910 * 12 11 10 35 35 H 1.09007 * 109.47201 * 59.99713 * 13 12 11 36 36 H 1.09001 * 109.46794 * 300.00194 * 13 12 11 37 37 H 1.08993 * 112.85007 * 18.80154 * 15 14 13 38 38 H 1.09003 * 113.61786 * 25.43754 * 16 15 14 39 39 H 1.09005 * 113.61380 * 156.33405 * 16 15 14 40 40 H 1.08999 * 113.61337 * 89.12276 * 17 16 15 41 41 H 1.08005 * 119.99313 * 359.97438 * 19 18 17 42 42 H 1.08000 * 119.98905 * 180.22913 * 20 19 18 43 43 H 1.08002 * 119.99131 * 179.76915 * 21 20 19 44 44 H 1.08004 * 120.00743 * 180.02562 * 22 21 20 45 45 H 1.09005 * 113.61435 * 270.88592 * 25 17 16 46 46 H 1.08996 * 113.69073 * 139.99081 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 6 2.4743 -6.1501 -0.0018 13 6 1.7093 -7.4751 -0.0031 14 8 2.6379 -8.5613 -0.0043 15 6 2.0232 -9.8514 -0.0062 16 6 2.2449 -10.6411 1.2946 17 6 3.5271 -11.1922 0.6489 18 6 3.7686 -12.6525 0.9328 19 6 2.7034 -13.5321 0.9847 20 6 2.9252 -14.8722 1.2403 21 6 4.2114 -15.3319 1.4547 22 6 5.2765 -14.4527 1.4083 23 6 5.0556 -13.1119 1.1472 24 17 6.3933 -12.0069 1.0882 25 6 2.8601 -10.9314 -0.7119 26 1 -0.4849 0.8401 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8896 29 1 2.8718 -3.6045 0.8894 30 1 2.8719 -3.6044 -0.8906 31 1 0.8537 -5.0446 -0.8913 32 1 0.8532 -5.0451 0.8885 33 1 3.1011 -6.0929 0.8881 34 1 3.1010 -6.0919 -0.8919 35 1 1.0828 -7.5321 -0.8934 36 1 1.0824 -7.5335 0.8866 37 1 0.9829 -9.8241 -0.3301 38 1 2.4302 -10.0090 2.1631 39 1 1.4864 -11.4022 1.4780 40 1 4.4071 -10.5748 0.8295 41 1 1.6980 -13.1726 0.8221 42 1 2.0931 -15.5597 1.2770 43 1 4.3837 -16.3785 1.6581 44 1 6.2812 -14.8121 1.5754 45 1 2.2698 -11.7718 -1.0771 46 1 3.5411 -10.5337 -1.4643 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224375380.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:15 Heat of formation + Delta-G solvation = -39.322076 kcal Electronic energy + Delta-G solvation = -23130.767532 eV Core-core repulsion = 19624.677130 eV Total energy + Delta-G solvation = -3506.090402 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.62479 -38.92927 -36.78298 -36.63120 -34.96268 -32.79102 -31.40720 -31.14945 -30.12237 -26.49059 -26.01022 -25.41011 -23.43015 -23.13395 -22.04671 -20.96214 -20.07704 -19.47098 -17.83438 -16.66112 -16.18817 -16.05483 -15.91919 -15.81665 -15.09964 -14.52333 -14.43291 -14.38559 -14.20749 -13.98807 -13.46429 -12.84616 -12.73805 -12.64895 -12.38275 -12.23852 -11.97183 -11.89321 -11.75132 -11.62264 -11.43846 -11.08839 -11.07306 -10.87896 -10.80508 -10.44825 -10.40800 -10.35858 -10.34736 -9.61359 -9.53026 -9.30345 -9.22851 -9.00659 -8.97141 -8.31342 -5.96497 -3.98341 0.72509 0.81052 1.81237 3.15742 3.33249 3.40452 3.43618 3.45678 4.19272 4.25895 4.38793 4.46859 4.49399 4.54528 4.63948 4.78079 4.91217 4.94803 5.10410 5.16183 5.23364 5.28346 5.33803 5.39260 5.49982 5.51769 5.55872 5.64493 5.74075 5.76949 5.79188 5.82279 5.93720 5.96736 6.10997 6.18024 6.31151 6.35254 6.44324 6.54630 6.84721 6.98451 7.20692 7.22220 7.73034 7.88420 8.04761 8.48212 9.09425 9.65562 11.14923 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.029263 B = 0.001612 C = 0.001547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.599240 B =17367.188671 C =18096.643606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.115 4.115 12 C -0.117 4.117 13 C 0.062 3.938 14 O -0.366 6.366 15 C 0.066 3.934 16 C -0.152 4.152 17 C -0.075 4.075 18 C -0.057 4.057 19 C -0.108 4.108 20 C -0.114 4.114 21 C -0.116 4.116 22 C -0.110 4.110 23 C -0.034 4.034 24 Cl -0.064 7.064 25 C -0.129 4.129 26 H 0.259 0.741 27 H 0.015 0.985 28 H 0.015 0.985 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.049 0.951 36 H 0.048 0.952 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.111 0.889 41 H 0.132 0.868 42 H 0.128 0.872 43 H 0.130 0.870 44 H 0.132 0.868 45 H 0.092 0.908 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.997 -35.155 1.999 35.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.018 4.018 10 C -0.147 4.147 11 C -0.153 4.153 12 C -0.154 4.154 13 C -0.014 4.014 14 O -0.285 6.285 15 C 0.007 3.993 16 C -0.189 4.189 17 C -0.093 4.093 18 C -0.058 4.058 19 C -0.126 4.126 20 C -0.132 4.132 21 C -0.134 4.134 22 C -0.128 4.128 23 C -0.060 4.060 24 Cl -0.035 7.035 25 C -0.166 4.166 26 H 0.069 0.931 27 H 0.033 0.967 28 H 0.033 0.967 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.109 0.891 40 H 0.129 0.871 41 H 0.150 0.850 42 H 0.146 0.854 43 H 0.148 0.852 44 H 0.150 0.850 45 H 0.110 0.890 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.175 -34.896 1.992 35.494 hybrid contribution 0.282 0.938 0.058 0.981 sum 6.456 -33.958 2.050 34.627 Atomic orbital electron populations 1.69983 1.06047 1.26373 1.51227 1.25039 0.94854 0.99255 0.95438 0.86548 0.80150 0.83848 0.77534 1.19748 1.21045 1.21043 1.21344 0.93112 0.91201 1.50081 0.92662 1.19120 0.94092 0.91489 0.97113 1.21615 0.99045 0.93756 1.00310 1.21584 0.97721 0.94440 1.01560 1.21601 0.99053 0.91792 1.02985 1.22725 0.92050 0.86626 1.00015 1.87898 1.33380 1.12736 1.94468 1.22931 0.96336 0.83934 0.96058 1.23604 0.96964 0.99667 0.98674 1.21648 0.99424 0.90930 0.97342 1.19730 0.91185 0.96407 0.98454 1.21016 0.98676 0.92884 1.00001 1.21251 0.97231 0.95663 0.99028 1.21109 0.92296 0.99726 1.00266 1.21078 1.00246 0.91273 1.00245 1.20899 0.88804 0.91266 1.05075 1.98382 1.45400 1.62915 1.96849 1.23272 0.99237 0.97727 0.96399 0.93142 0.96678 0.96690 0.93412 0.93415 0.92435 0.92432 0.91460 0.91455 0.93307 0.93338 0.90739 0.90276 0.89147 0.87065 0.85033 0.85423 0.85229 0.85024 0.88991 0.90093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.41 13.29 55.43 0.74 -26.67 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 7 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 10 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 11 C -0.12 -1.96 5.21 -26.73 -0.14 -2.10 16 12 C -0.12 -1.69 5.58 -26.73 -0.15 -1.84 16 13 C 0.06 0.77 5.78 37.16 0.21 0.99 16 14 O -0.37 -4.62 10.27 -35.23 -0.36 -4.98 16 15 C 0.07 0.63 4.38 -25.92 -0.11 0.51 16 16 C -0.15 -1.28 7.29 -25.92 -0.19 -1.47 16 17 C -0.08 -0.68 3.69 -90.96 -0.34 -1.02 16 18 C -0.06 -0.48 5.29 -104.59 -0.55 -1.03 16 19 C -0.11 -0.72 8.63 -39.59 -0.34 -1.07 16 20 C -0.11 -0.66 10.05 -39.58 -0.40 -1.05 16 21 C -0.12 -0.68 10.05 -39.59 -0.40 -1.08 16 22 C -0.11 -0.78 9.83 -39.55 -0.39 -1.17 16 23 C -0.03 -0.30 6.31 -39.50 -0.25 -0.55 16 24 Cl -0.06 -0.60 27.16 -51.86 -1.41 -2.01 16 25 C -0.13 -1.10 7.38 -25.92 -0.19 -1.29 16 26 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.05 0.99 8.14 -51.92 -0.42 0.57 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.07 0.99 8.14 -51.92 -0.42 0.56 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.62 7.87 -51.93 -0.41 0.21 16 38 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.09 0.59 6.31 -51.93 -0.33 0.26 16 40 H 0.11 1.19 6.57 -51.93 -0.34 0.85 16 41 H 0.13 0.67 6.65 -52.48 -0.35 0.32 16 42 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 43 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 44 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 45 H 0.09 0.62 7.73 -51.93 -0.40 0.22 16 46 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 388.79 15.07 5.86 5.86 Total: -1.00 -31.60 388.79 -11.83 -43.42 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -7.71 Total: -4.49 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: -3.92 Total: -28.15 kcal Atomic # 7 Polarization: -27.41 SS G_CDS: 0.74 Total: -26.67 kcal Atomic # 8 Polarization: -4.62 SS G_CDS: -0.36 Total: -4.98 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.41 Total: -2.01 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.60 -11.83 -43.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224375380.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.103 kcal (2) G-P(sol) polarization free energy of solvation -31.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds