Wall clock time and date at job start Tue Mar 31 2020 13:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00315 * 2 1 4 4 H 1.48496 * 109.47276 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47115 * 300.00389 * 3 2 1 6 6 H 1.48497 * 109.47015 * 60.00209 * 3 2 1 7 7 C 1.37881 * 119.99754 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99990 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99897 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47037 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47183 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.47183 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.47183 * 180.02562 * 12 11 10 14 14 O 1.42898 * 109.46900 * 179.97438 * 13 12 11 15 15 C 1.42905 * 113.99615 * 180.02562 * 14 13 12 16 16 C 1.53781 * 113.61093 * 247.49599 * 15 14 13 17 17 C 1.53779 * 87.08092 * 270.88543 * 16 15 14 18 18 C 1.50709 * 113.68928 * 220.01004 * 17 16 15 19 19 C 1.38235 * 120.00638 * 37.26005 * 18 17 16 20 20 C 1.38220 * 120.01193 * 179.76942 * 19 18 17 21 21 C 1.38264 * 120.02229 * 0.50851 * 20 19 18 22 22 C 1.38190 * 120.01659 * 359.74340 * 21 20 19 23 23 C 1.38327 * 120.00215 * 217.53746 * 18 17 16 24 24 Cl 1.73603 * 120.01917 * 359.95281 * 23 18 17 25 25 C 1.53777 * 87.08235 * 334.56833 * 17 16 15 26 26 H 0.97002 * 119.99301 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.47115 * 60.00868 * 9 7 2 28 28 H 1.08996 * 109.47749 * 300.00383 * 9 7 2 29 29 H 1.08997 * 109.47207 * 59.99956 * 10 9 7 30 30 H 1.09009 * 109.46785 * 300.00239 * 10 9 7 31 31 H 1.08997 * 109.47353 * 59.99717 * 11 10 9 32 32 H 1.08993 * 109.46905 * 299.99921 * 11 10 9 33 33 H 1.08997 * 109.47207 * 59.99627 * 12 11 10 34 34 H 1.09009 * 109.46785 * 299.99910 * 12 11 10 35 35 H 1.09007 * 109.47201 * 59.99713 * 13 12 11 36 36 H 1.09001 * 109.46794 * 300.00194 * 13 12 11 37 37 H 1.08993 * 112.85007 * 18.80154 * 15 14 13 38 38 H 1.09003 * 113.61786 * 25.43754 * 16 15 14 39 39 H 1.09005 * 113.61380 * 156.33405 * 16 15 14 40 40 H 1.08999 * 113.61337 * 89.12276 * 17 16 15 41 41 H 1.08005 * 119.99313 * 359.97438 * 19 18 17 42 42 H 1.08000 * 119.98905 * 180.22913 * 20 19 18 43 43 H 1.08002 * 119.99131 * 179.76915 * 21 20 19 44 44 H 1.08004 * 120.00743 * 180.02562 * 22 21 20 45 45 H 1.09005 * 113.61435 * 270.88592 * 25 17 16 46 46 H 1.08996 * 113.69073 * 139.99081 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 6 1.4801 -4.9871 -0.0012 12 6 2.4743 -6.1501 -0.0018 13 6 1.7093 -7.4751 -0.0031 14 8 2.6379 -8.5613 -0.0043 15 6 2.0232 -9.8514 -0.0062 16 6 2.2449 -10.6411 1.2946 17 6 3.5271 -11.1922 0.6489 18 6 3.7686 -12.6525 0.9328 19 6 2.7034 -13.5321 0.9847 20 6 2.9252 -14.8722 1.2403 21 6 4.2114 -15.3319 1.4547 22 6 5.2765 -14.4527 1.4083 23 6 5.0556 -13.1119 1.1472 24 17 6.3933 -12.0069 1.0882 25 6 2.8601 -10.9314 -0.7119 26 1 -0.4849 0.8401 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6246 -2.5571 0.8896 29 1 2.8718 -3.6045 0.8894 30 1 2.8719 -3.6044 -0.8906 31 1 0.8537 -5.0446 -0.8913 32 1 0.8532 -5.0451 0.8885 33 1 3.1011 -6.0929 0.8881 34 1 3.1010 -6.0919 -0.8919 35 1 1.0828 -7.5321 -0.8934 36 1 1.0824 -7.5335 0.8866 37 1 0.9829 -9.8241 -0.3301 38 1 2.4302 -10.0090 2.1631 39 1 1.4864 -11.4022 1.4780 40 1 4.4071 -10.5748 0.8295 41 1 1.6980 -13.1726 0.8221 42 1 2.0931 -15.5597 1.2770 43 1 4.3837 -16.3785 1.6581 44 1 6.2812 -14.8121 1.5754 45 1 2.2698 -11.7718 -1.0771 46 1 3.5411 -10.5337 -1.4643 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224375380.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:14 Heat of formation + Delta-G solvation = -53.449599 kcal Electronic energy + Delta-G solvation = -23131.380148 eV Core-core repulsion = 19624.677130 eV Total energy + Delta-G solvation = -3506.703018 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.144 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.24469 -39.59590 -37.67512 -37.37720 -36.44840 -34.72237 -32.27530 -31.63918 -31.54336 -28.16820 -26.67355 -26.12626 -25.08262 -23.68144 -22.68582 -22.32715 -21.73292 -20.21033 -18.44318 -18.37639 -17.35854 -17.00498 -16.68538 -16.55437 -16.43822 -15.79262 -15.71059 -15.01673 -14.78142 -14.72968 -14.51719 -14.39924 -14.06876 -13.65477 -13.37043 -13.29342 -13.11259 -12.86554 -12.78467 -12.74872 -12.46564 -12.42802 -12.31468 -12.09401 -12.04431 -11.83613 -11.62575 -11.45023 -11.33943 -11.30255 -11.08466 -10.93990 -10.56005 -10.38178 -9.81005 -9.55395 -8.20643 -6.31721 0.21168 0.32045 1.21254 1.39199 1.39409 1.53152 2.40370 2.59442 2.66909 3.12082 3.56667 3.66262 3.70131 3.92027 3.98030 4.04879 4.11522 4.14544 4.25683 4.29267 4.39738 4.43400 4.45233 4.47343 4.60125 4.73386 4.74239 4.77126 4.88399 4.89274 4.96107 5.02842 5.07256 5.09286 5.12322 5.27028 5.30202 5.31364 5.34994 5.40138 5.50382 5.55545 5.57275 5.78330 5.86940 5.90703 6.26242 6.36950 6.85666 7.37503 8.91296 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.029263 B = 0.001612 C = 0.001547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.599240 B =17367.188671 C =18096.643606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.021 3.979 10 C -0.100 4.100 11 C -0.106 4.106 12 C -0.109 4.109 13 C 0.067 3.933 14 O -0.388 6.388 15 C 0.056 3.944 16 C -0.144 4.144 17 C -0.077 4.077 18 C -0.071 4.071 19 C -0.111 4.111 20 C -0.112 4.112 21 C -0.115 4.115 22 C -0.120 4.120 23 C -0.055 4.055 24 Cl -0.084 7.084 25 C -0.122 4.122 26 H 0.264 0.736 27 H -0.008 1.008 28 H -0.008 1.008 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.092 0.908 38 H 0.064 0.936 39 H 0.115 0.885 40 H 0.087 0.913 41 H 0.150 0.850 42 H 0.155 0.845 43 H 0.155 0.845 44 H 0.140 0.860 45 H 0.114 0.886 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.661 -36.887 2.031 37.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.790 3.210 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.076 0.924 9 C -0.016 4.016 10 C -0.138 4.138 11 C -0.143 4.143 12 C -0.147 4.147 13 C -0.009 4.009 14 O -0.307 6.307 15 C -0.002 4.002 16 C -0.181 4.181 17 C -0.095 4.095 18 C -0.072 4.072 19 C -0.129 4.129 20 C -0.130 4.130 21 C -0.133 4.133 22 C -0.139 4.139 23 C -0.081 4.081 24 Cl -0.055 7.055 25 C -0.160 4.160 26 H 0.072 0.928 27 H 0.011 0.989 28 H 0.010 0.990 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.110 0.890 38 H 0.083 0.917 39 H 0.133 0.867 40 H 0.105 0.895 41 H 0.168 0.832 42 H 0.173 0.827 43 H 0.173 0.827 44 H 0.158 0.842 45 H 0.133 0.867 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.847 -36.645 2.024 37.164 hybrid contribution 0.358 1.396 0.059 1.442 sum 6.205 -35.249 2.083 35.851 Atomic orbital electron populations 1.70106 1.07750 1.27685 1.51780 1.26000 0.95826 1.03386 0.94720 0.85387 0.78989 0.78715 0.77885 1.18768 1.20214 1.20227 1.21787 0.93543 0.92667 1.50429 0.92414 1.19055 0.94551 0.93199 0.94835 1.21455 0.98044 0.93940 1.00359 1.21425 0.97827 0.93235 1.01844 1.21435 0.98390 0.92151 1.02693 1.22587 0.91672 0.85700 1.00937 1.87860 1.34219 1.13931 1.94700 1.23167 0.97220 0.82752 0.97029 1.23610 0.97275 0.99728 0.97524 1.21529 0.98785 0.91360 0.97870 1.19772 0.91648 0.96213 0.99562 1.21266 0.98918 0.93156 0.99561 1.21623 0.98042 0.95702 0.97609 1.21466 0.91990 1.00743 0.99126 1.21301 1.01372 0.90881 1.00297 1.21118 0.88585 0.91735 1.06711 1.98368 1.46367 1.63705 1.97036 1.23288 0.98960 0.97972 0.95739 0.92759 0.98919 0.98967 0.93350 0.93292 0.92130 0.92211 0.91841 0.91704 0.92257 0.92508 0.88991 0.91739 0.86682 0.89512 0.83209 0.82712 0.82730 0.84198 0.86737 0.91554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.76 13.29 21.45 0.28 -57.47 16 2 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 3 Si 0.97 45.23 29.54 68.60 2.03 47.25 16 4 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 7 C -0.55 -32.18 9.11 25.60 0.23 -31.95 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 9 C 0.02 1.12 4.97 29.85 0.15 1.27 16 10 C -0.10 -4.26 5.15 30.60 0.16 -4.11 16 11 C -0.11 -3.56 5.21 30.60 0.16 -3.40 16 12 C -0.11 -3.09 5.58 30.60 0.17 -2.92 16 13 C 0.07 1.60 5.78 71.98 0.42 2.01 16 14 O -0.39 -9.54 10.27 -148.98 -1.53 -11.07 16 15 C 0.06 0.99 4.38 31.12 0.14 1.13 16 16 C -0.14 -2.26 7.29 31.12 0.23 -2.03 16 17 C -0.08 -1.36 3.69 -11.01 -0.04 -1.40 16 18 C -0.07 -1.13 5.29 -19.84 -0.10 -1.23 16 19 C -0.11 -1.22 8.63 22.26 0.19 -1.03 16 20 C -0.11 -0.95 10.05 22.27 0.22 -0.72 16 21 C -0.12 -1.07 10.05 22.26 0.22 -0.84 16 22 C -0.12 -1.59 9.83 22.29 0.22 -1.37 16 23 C -0.06 -0.95 6.31 22.32 0.14 -0.81 16 24 Cl -0.08 -1.64 27.16 -2.72 -0.07 -1.72 16 25 C -0.12 -1.95 7.38 31.12 0.23 -1.72 16 26 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 27 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 28 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 29 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 31 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 35 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 36 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.09 1.29 7.87 -2.39 -0.02 1.28 16 38 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.12 1.19 6.31 -2.38 -0.02 1.18 16 40 H 0.09 1.95 6.57 -2.39 -0.02 1.94 16 41 H 0.15 1.00 6.65 -2.91 -0.02 0.98 16 42 H 0.16 0.45 8.06 -2.91 -0.02 0.43 16 43 H 0.16 0.60 8.06 -2.91 -0.02 0.57 16 44 H 0.14 1.49 8.06 -2.91 -0.02 1.46 16 45 H 0.11 1.28 7.73 -2.38 -0.02 1.26 16 46 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -69.05 388.79 4.84 -64.21 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: 0.94 Total: 7.56 kcal Atomic # 6 Polarization: -51.96 SS G_CDS: 3.19 Total: -48.76 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: 0.28 Total: -57.47 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: -1.53 Total: -11.07 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Atomic # 17 Polarization: -1.64 SS G_CDS: -0.07 Total: -1.72 kcal Total: -69.05 4.84 -64.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224375380.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.762 kcal (2) G-P(sol) polarization free energy of solvation -69.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds