Wall clock time and date at job start Tue Mar 31 2020 13:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46900 * 109.47276 * 2 1 4 4 C 1.46903 * 109.47342 * 120.00271 * 2 1 3 5 5 C 1.46903 * 109.47064 * 239.99658 * 2 1 3 6 6 C 1.53009 * 109.46639 * 63.36814 * 5 2 1 7 7 H 1.08999 * 109.47216 * 52.89422 * 6 5 2 8 8 C 1.50704 * 109.46955 * 172.88898 * 6 5 2 9 9 H 1.07990 * 120.00283 * 245.19654 * 8 6 5 10 10 C 1.37877 * 119.99791 * 65.19060 * 8 6 5 11 11 N 1.31516 * 119.99849 * 5.23848 * 10 8 6 12 12 Si 1.86803 * 119.99995 * 185.23650 * 10 8 6 13 13 H 1.48498 * 109.47181 * 95.00214 * 12 10 8 14 14 H 1.48498 * 109.47045 * 215.00051 * 12 10 8 15 15 H 1.48499 * 109.46967 * 334.99865 * 12 10 8 16 16 O 1.42890 * 109.47025 * 292.88698 * 6 5 2 17 17 C 1.35997 * 116.99872 * 148.71708 * 16 6 5 18 18 C 1.39131 * 120.06652 * 5.09180 * 17 16 6 19 19 C 1.37177 * 120.53642 * 179.73985 * 18 17 16 20 20 C 1.41074 * 120.51663 * 0.58886 * 19 18 17 21 21 N 1.34967 * 128.67565 * 179.70318 * 20 19 18 22 22 C 1.28829 * 117.87159 * 179.97438 * 21 20 19 23 23 N 1.38080 * 124.81414 * 179.97438 * 22 21 20 24 24 S 1.75805 * 110.37633 * 359.97438 * 22 21 20 25 25 C 1.39744 * 118.46823 * 359.67267 * 20 19 18 26 26 C 1.38132 * 120.07084 * 185.37514 * 17 16 6 27 27 H 1.09000 * 109.47409 * 48.41965 * 1 2 3 28 28 H 1.09006 * 109.47152 * 168.42189 * 1 2 3 29 29 H 1.09001 * 109.47265 * 288.41717 * 1 2 3 30 30 H 1.08993 * 109.46834 * 59.99584 * 3 2 1 31 31 H 1.08994 * 109.47147 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.46711 * 300.00408 * 3 2 1 33 33 H 1.08994 * 109.47181 * 59.99834 * 4 2 1 34 34 H 1.09001 * 109.47288 * 180.02562 * 4 2 1 35 35 H 1.09004 * 109.46727 * 299.99623 * 4 2 1 36 36 H 1.08996 * 109.46874 * 183.36376 * 5 2 1 37 37 H 1.08995 * 109.47410 * 303.37061 * 5 2 1 38 38 H 0.97002 * 119.99918 * 179.97438 * 11 10 8 39 39 H 1.07995 * 119.73043 * 0.02562 * 18 17 16 40 40 H 1.08006 * 119.73941 * 180.24142 * 19 18 17 41 41 H 0.96996 * 119.99856 * 179.97438 * 23 22 21 42 42 H 0.96998 * 119.99341 * 0.02562 * 23 22 21 43 43 H 1.08001 * 119.91846 * 359.97173 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9587 1.3850 0.0000 4 6 1.9587 -0.6926 1.1994 5 6 1.9586 -0.6926 -1.1994 6 6 1.5189 0.0760 -2.4473 7 1 1.8230 1.1188 -2.3577 8 6 2.1645 -0.5326 -3.6655 9 1 2.8789 0.0381 -4.2400 10 6 1.8430 -1.8181 -4.0465 11 7 0.8988 -2.4759 -3.4097 12 14 2.7483 -2.6252 -5.4671 13 1 3.8709 -3.4414 -4.9389 14 1 1.8117 -3.4991 -6.2184 15 1 3.2820 -1.5769 -6.3734 16 8 0.0976 0.0035 -2.5750 17 6 -0.5256 1.0668 -3.1501 18 6 0.2248 2.1122 -3.6789 19 6 -0.3936 3.1868 -4.2659 20 6 -1.8011 3.2552 -4.3318 21 7 -2.5745 4.2267 -4.8608 22 6 -3.8527 4.0745 -4.8082 23 7 -4.7748 4.9755 -5.3026 24 16 -4.2565 2.5570 -4.0177 25 6 -2.5452 2.2022 -3.7929 26 6 -1.9050 1.1138 -3.2052 27 1 -0.3634 0.6820 -0.7687 28 1 -0.3634 -1.0068 -0.2063 29 1 -0.3634 0.3247 0.9750 30 1 1.5953 1.8987 0.8899 31 1 3.0486 1.3849 -0.0005 32 1 1.5952 1.8988 -0.8900 33 1 1.5954 -1.7202 1.1994 34 1 3.0487 -0.6922 1.1996 35 1 1.5954 -0.1787 2.0894 36 1 3.0469 -0.7451 -1.1698 37 1 1.5468 -1.7013 -1.2301 38 1 0.6724 -3.3802 -3.6779 39 1 1.3031 2.0752 -3.6310 40 1 0.2017 3.9894 -4.6758 41 1 -5.7237 4.7898 -5.2257 42 1 -4.4736 5.7938 -5.7275 43 1 -2.4886 0.3047 -2.7913 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226136267.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:05 Heat of formation + Delta-G solvation = 134.210020 kcal Electronic energy + Delta-G solvation = -25936.277754 eV Core-core repulsion = 22420.278554 eV Total energy + Delta-G solvation = -3515.999200 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.133 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.42266 -41.02242 -39.48697 -37.16140 -34.88691 -34.10313 -32.14487 -31.38876 -30.46371 -30.27457 -28.77622 -27.84826 -25.29278 -24.78104 -23.55524 -22.92325 -21.64194 -19.77410 -19.21517 -18.98175 -18.55581 -18.35455 -17.61713 -17.45064 -16.79428 -16.47347 -16.09821 -15.75491 -15.45372 -15.26588 -15.03718 -14.87760 -14.58449 -14.35034 -14.23930 -14.10307 -14.03028 -13.78515 -13.48213 -13.42446 -13.33273 -13.19089 -12.56512 -12.54925 -12.17325 -11.82394 -11.61601 -11.06238 -11.02504 -10.81866 -10.35349 -10.22877 -10.10169 -8.89999 -8.15641 -7.73314 -5.98212 0.03801 0.21758 0.25466 0.41861 0.86892 1.79474 2.09077 2.21344 2.26121 2.27832 2.28285 2.32620 2.45529 2.73057 3.00467 3.05304 3.10752 3.16571 3.36412 3.47033 3.60023 3.62420 3.69478 3.71517 3.78602 3.82522 4.05805 4.07613 4.17321 4.19528 4.32212 4.49079 4.50357 4.78351 4.94423 5.15449 5.26798 5.43260 5.64053 5.80583 6.00666 6.08539 6.24329 6.32465 6.83446 7.16330 7.23613 7.86397 9.27058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.273 5.273 3 C -0.048 4.048 4 C -0.041 4.041 5 C 0.000 4.000 6 C 0.191 3.809 7 H 0.050 0.950 8 C -0.570 4.570 9 H 0.080 0.920 10 C 0.092 3.908 11 N -0.849 5.849 12 Si 0.899 3.101 13 H -0.273 1.273 14 H -0.277 1.277 15 H -0.266 1.266 16 O -0.291 6.291 17 C 0.156 3.844 18 C -0.177 4.177 19 C -0.045 4.045 20 C 0.080 3.920 21 N -0.539 5.539 22 C 0.369 3.631 23 N -0.817 5.817 24 S 0.033 5.967 25 C -0.143 4.143 26 C -0.121 4.121 27 H 0.127 0.873 28 H 0.123 0.877 29 H 0.100 0.900 30 H 0.111 0.889 31 H 0.116 0.884 32 H 0.119 0.881 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.110 0.890 36 H 0.125 0.875 37 H 0.147 0.853 38 H 0.277 0.723 39 H 0.143 0.857 40 H 0.131 0.869 41 H 0.416 0.584 42 H 0.414 0.586 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.230 5.801 15.869 16.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 N 0.068 4.932 3 C -0.189 4.189 4 C -0.183 4.183 5 C -0.119 4.119 6 C 0.136 3.864 7 H 0.068 0.932 8 C -0.606 4.606 9 H 0.098 0.902 10 C -0.119 4.119 11 N -0.481 5.481 12 Si 0.725 3.275 13 H -0.198 1.198 14 H -0.202 1.202 15 H -0.190 1.190 16 O -0.204 6.204 17 C 0.106 3.894 18 C -0.197 4.197 19 C -0.066 4.066 20 C -0.038 4.038 21 N -0.265 5.265 22 C -0.010 4.010 23 N -0.370 5.370 24 S 0.279 5.721 25 C -0.263 4.263 26 C -0.146 4.146 27 H 0.145 0.855 28 H 0.141 0.859 29 H 0.119 0.881 30 H 0.129 0.871 31 H 0.135 0.865 32 H 0.137 0.863 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.128 0.872 36 H 0.143 0.857 37 H 0.165 0.835 38 H 0.087 0.913 39 H 0.160 0.840 40 H 0.149 0.851 41 H 0.247 0.753 42 H 0.246 0.754 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.676 5.417 15.960 16.867 hybrid contribution 1.043 -0.281 -1.212 1.623 sum 0.367 5.135 14.748 15.620 Atomic orbital electron populations 1.24288 0.76305 1.10496 1.07030 1.46413 1.15681 1.14845 1.16219 1.24088 1.05058 0.81376 1.08416 1.24018 1.04942 1.01977 0.87350 1.24883 1.03335 1.02972 0.80674 1.20396 0.78304 0.94783 0.92880 0.93237 1.21185 1.28020 1.00203 1.11181 0.90238 1.25037 0.93333 0.96886 0.96669 1.69818 1.25677 1.12587 1.40038 0.86390 0.79740 0.79780 0.81602 1.19786 1.20241 1.19035 1.86379 1.23598 1.37286 1.73164 1.18535 0.90867 0.86623 0.93412 1.21169 1.00925 0.94490 1.03154 1.20417 0.90272 0.98224 0.97699 1.18598 0.94506 0.89563 1.01132 1.66178 1.01715 1.30755 1.27838 1.23575 0.89566 0.92385 0.95521 1.41469 1.06500 1.22880 1.66119 1.84948 1.04608 1.18838 1.63690 1.22924 0.94593 1.00762 1.08000 1.19263 0.91823 0.97749 1.05716 0.85489 0.85860 0.88146 0.87053 0.86505 0.86274 0.86517 0.86786 0.87172 0.85670 0.83517 0.91293 0.83968 0.85076 0.75315 0.75395 0.85130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.36 7.08 60.06 0.42 0.78 16 2 N -0.27 2.79 0.05 -395.62 -0.02 2.77 16 3 C -0.05 0.55 7.56 60.06 0.45 1.00 16 4 C -0.04 0.53 7.99 60.07 0.48 1.01 16 5 C 0.00 0.00 3.58 -3.82 -0.01 -0.01 16 6 C 0.19 0.04 1.36 -27.88 -0.04 0.00 16 7 H 0.05 -0.11 3.58 -51.93 -0.19 -0.30 16 8 C -0.57 -3.55 8.61 -34.44 -0.30 -3.85 16 9 H 0.08 0.58 7.82 -52.49 -0.41 0.17 16 10 C 0.09 0.79 5.24 -17.82 -0.09 0.70 16 11 N -0.85 -7.45 11.22 55.43 0.62 -6.82 16 12 Si 0.90 8.04 29.54 -169.99 -5.02 3.02 16 13 H -0.27 -2.45 7.11 56.52 0.40 -2.05 16 14 H -0.28 -2.93 7.11 56.52 0.40 -2.53 16 15 H -0.27 -2.62 7.11 56.52 0.40 -2.22 16 16 O -0.29 -0.57 6.01 -19.73 -0.12 -0.69 16 17 C 0.16 0.44 5.71 -39.29 -0.22 0.21 16 18 C -0.18 -0.43 8.84 -39.64 -0.35 -0.78 16 19 C -0.04 -0.16 10.09 -38.89 -0.39 -0.55 16 20 C 0.08 0.42 6.94 -84.85 -0.59 -0.17 16 21 N -0.54 -2.96 10.62 -11.14 -0.12 -3.08 16 22 C 0.37 1.17 8.74 -88.89 -0.78 0.39 16 23 N -0.82 0.52 9.05 30.47 0.28 0.80 16 24 S 0.03 0.09 23.39 -107.50 -2.51 -2.43 16 25 C -0.14 -0.63 6.52 -38.63 -0.25 -0.88 16 26 C -0.12 -0.42 10.00 -39.23 -0.39 -0.81 16 27 H 0.13 -0.81 5.02 -51.93 -0.26 -1.07 16 28 H 0.12 -0.89 7.91 -51.93 -0.41 -1.30 16 29 H 0.10 -1.18 7.96 -51.93 -0.41 -1.60 16 30 H 0.11 -1.51 8.14 -51.93 -0.42 -1.94 16 31 H 0.12 -1.47 8.14 -51.93 -0.42 -1.90 16 32 H 0.12 -1.14 5.85 -51.93 -0.30 -1.45 16 33 H 0.12 -1.43 8.14 -51.93 -0.42 -1.86 16 34 H 0.11 -1.55 8.13 -51.93 -0.42 -1.97 16 35 H 0.11 -1.61 8.06 -51.93 -0.42 -2.02 16 36 H 0.13 -0.74 8.11 -51.93 -0.42 -1.16 16 37 H 0.15 -0.27 6.72 -51.93 -0.35 -0.62 16 38 H 0.28 2.64 8.31 -40.82 -0.34 2.30 16 39 H 0.14 0.15 5.79 -52.49 -0.30 -0.15 16 40 H 0.13 0.30 8.06 -52.48 -0.42 -0.12 16 41 H 0.42 -1.35 8.95 -40.82 -0.37 -1.72 16 42 H 0.41 -0.70 8.95 -40.82 -0.37 -1.07 16 43 H 0.13 0.33 8.06 -52.49 -0.42 -0.09 16 LS Contribution 351.12 15.07 5.29 5.29 Total: 0.00 -19.20 351.12 -9.54 -28.74 By element: Atomic # 1 Polarization: -18.77 SS G_CDS: -5.88 Total: -24.65 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -2.06 Total: -2.95 kcal Atomic # 7 Polarization: -7.10 SS G_CDS: 0.76 Total: -6.34 kcal Atomic # 8 Polarization: -0.57 SS G_CDS: -0.12 Total: -0.69 kcal Atomic # 14 Polarization: 8.04 SS G_CDS: -5.02 Total: 3.02 kcal Atomic # 16 Polarization: 0.09 SS G_CDS: -2.51 Total: -2.43 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -19.20 -9.54 -28.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226136267.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.950 kcal (2) G-P(sol) polarization free energy of solvation -19.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds