Wall clock time and date at job start Tue Mar 31 2020 13:15:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99496 * 2 1 4 4 H 1.48497 * 109.47156 * 353.81196 * 3 2 1 5 5 H 1.48497 * 109.47292 * 113.81241 * 3 2 1 6 6 H 1.48503 * 109.47209 * 233.81052 * 3 2 1 7 7 C 1.38810 * 120.00288 * 180.28194 * 2 1 3 8 8 H 1.07994 * 119.99868 * 15.39704 * 7 2 1 9 9 N 1.36940 * 119.99625 * 195.40591 * 7 2 1 10 10 C 1.47020 * 125.64876 * 8.20155 * 9 7 2 11 11 C 1.54329 * 107.27027 * 181.02420 * 10 9 7 12 12 C 1.55164 * 102.94129 * 22.19179 * 11 10 9 13 13 H 1.09001 * 111.00116 * 82.57392 * 12 11 10 14 14 O 1.42896 * 111.00686 * 206.38601 * 12 11 10 15 15 C 1.35850 * 117.00013 * 202.65194 * 14 12 11 16 16 C 1.38407 * 120.16591 * 354.60367 * 15 14 12 17 17 C 1.38512 * 120.16327 * 179.80895 * 16 15 14 18 18 C 1.37873 * 120.63798 * 0.45796 * 17 16 15 19 19 C 1.39192 * 120.15892 * 359.77674 * 18 17 16 20 20 N 1.38342 * 132.29545 * 179.97438 * 19 18 17 21 21 H 0.97004 * 124.85914 * 0.02562 * 20 19 18 22 22 C 1.38372 * 110.27646 * 180.02562 * 20 19 18 23 23 C 1.39154 * 132.34163 * 179.97438 * 22 20 19 24 24 C 1.37828 * 120.04173 * 179.97438 * 23 22 20 25 25 C 1.38653 * 120.57950 * 0.02562 * 24 23 22 26 26 C 1.37814 * 120.23437 * 359.97438 * 25 24 23 27 27 C 1.39302 * 119.77852 * 0.04582 * 26 25 24 28 28 C 1.39697 * 120.16092 * 174.88740 * 15 14 12 29 29 C 1.47422 * 125.64567 * 187.89720 * 9 7 2 30 30 H 0.97005 * 119.99281 * 185.15800 * 1 2 3 31 31 H 1.08994 * 109.88232 * 300.43893 * 10 9 7 32 32 H 1.09001 * 109.88256 * 61.45688 * 10 9 7 33 33 H 1.08993 * 110.72276 * 140.55305 * 11 10 9 34 34 H 1.08997 * 110.72274 * 263.83293 * 11 10 9 35 35 H 1.08004 * 119.91177 * 0.02562 * 16 15 14 36 36 H 1.08003 * 119.67756 * 180.21416 * 17 16 15 37 37 H 1.07995 * 119.92276 * 179.80725 * 18 17 16 38 38 H 1.07997 * 119.98167 * 0.02562 * 23 22 20 39 39 H 1.08004 * 119.71174 * 179.97438 * 24 23 22 40 40 H 1.08001 * 119.87971 * 180.02562 * 25 24 23 41 41 H 1.07996 * 120.11033 * 180.02562 * 26 25 24 42 42 H 1.09003 * 110.36681 * 274.74423 * 29 9 7 43 43 H 1.09004 * 110.36958 * 37.06394 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2921 2.7424 -0.1509 5 1 2.9871 1.7640 1.2809 6 1 3.2135 1.6333 -1.1300 7 6 2.0103 -1.2021 -0.0059 8 1 1.4994 -2.1193 -0.2588 9 7 3.3428 -1.2248 0.3090 10 6 4.1188 -0.0914 0.8331 11 6 5.5732 -0.5756 1.0122 12 6 5.6573 -1.7874 0.0467 13 1 5.8489 -1.4601 -0.9752 14 8 6.6519 -2.7182 0.4784 15 6 7.1677 -3.5506 -0.4632 16 6 6.6513 -3.5531 -1.7474 17 6 7.1799 -4.3990 -2.7084 18 6 8.2168 -5.2533 -2.3988 19 6 8.7481 -5.2708 -1.1124 20 7 9.7663 -6.0087 -0.5357 21 1 10.2968 -6.6769 -0.9973 22 6 9.9195 -5.6571 0.7938 23 6 10.7880 -6.1007 1.7865 24 6 10.7192 -5.5635 3.0539 25 6 9.7886 -4.5803 3.3538 26 6 8.9201 -4.1280 2.3842 27 6 8.9785 -4.6627 1.0992 28 6 8.2180 -4.4125 -0.1386 29 6 4.2353 -2.3916 0.1847 30 1 -0.4849 -0.8367 0.0755 31 1 4.0885 0.7373 0.1257 32 1 3.7104 0.2254 1.7928 33 1 6.2777 0.2020 0.7173 34 1 5.7515 -0.8891 2.0408 35 1 5.8365 -2.8913 -2.0015 36 1 6.7732 -4.3920 -3.7089 37 1 8.6180 -5.9101 -3.1563 38 1 11.5168 -6.8657 1.5635 39 1 11.3955 -5.9120 3.8205 40 1 9.7449 -4.1670 4.3506 41 1 8.1963 -3.3619 2.6198 42 1 4.1705 -3.0154 1.0762 43 1 3.9816 -2.9703 -0.7035 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226258331.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:31 Heat of formation + Delta-G solvation = 73.623559 kcal Electronic energy + Delta-G solvation = -26360.353405 eV Core-core repulsion = 22758.053199 eV Total energy + Delta-G solvation = -3602.300206 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.61748 -39.64011 -37.89285 -36.81359 -35.43294 -32.60539 -32.00354 -30.41137 -29.63011 -29.01633 -28.43807 -28.06662 -24.34116 -23.67348 -22.56540 -22.15069 -21.05267 -20.80551 -20.23940 -18.41308 -17.69951 -17.46139 -16.84495 -16.28745 -15.72683 -15.13760 -15.07642 -14.94795 -14.70162 -14.27935 -14.06046 -13.95134 -13.52226 -13.39428 -13.34549 -12.92600 -12.53160 -12.26569 -12.07748 -11.96096 -11.71689 -11.50533 -11.34996 -11.23725 -11.11200 -10.97933 -10.58546 -10.29266 -9.96723 -9.70936 -9.40368 -9.03140 -8.76896 -8.74081 -7.96511 -7.51843 -7.09633 -6.34353 -3.25633 0.76083 1.07252 1.76077 1.84636 2.72954 3.26587 3.39408 3.46222 3.63433 3.69411 3.89500 4.46203 4.52031 4.59505 4.83702 4.86783 4.93195 4.96643 5.06570 5.12826 5.13848 5.20322 5.24869 5.29000 5.39677 5.41869 5.45794 5.60573 5.71755 5.82774 5.88090 5.92681 6.11109 6.14935 6.23659 6.32760 6.36589 6.41468 6.43809 6.45678 6.52599 6.54638 6.68451 6.76021 6.96470 7.33137 7.52467 7.63631 8.29672 9.00341 9.50772 10.16366 11.16284 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.019374 B = 0.003242 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.884603 B = 8633.441300 C = 9563.580605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.021 4.021 3 Si 1.070 2.930 4 H -0.301 1.301 5 H -0.286 1.286 6 H -0.297 1.297 7 C -0.324 4.324 8 H 0.080 0.920 9 N -0.609 5.609 10 C 0.109 3.891 11 C -0.120 4.120 12 C 0.062 3.938 13 H 0.087 0.913 14 O -0.297 6.297 15 C 0.201 3.799 16 C -0.245 4.245 17 C -0.038 4.038 18 C -0.191 4.191 19 C 0.177 3.823 20 N -0.617 5.617 21 H 0.416 0.584 22 C 0.130 3.870 23 C -0.146 4.146 24 C -0.091 4.091 25 C -0.152 4.152 26 C -0.057 4.057 27 C -0.081 4.081 28 C -0.142 4.142 29 C 0.122 3.878 30 H 0.262 0.738 31 H 0.035 0.965 32 H 0.053 0.947 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.138 0.862 36 H 0.131 0.869 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.131 0.869 42 H 0.037 0.963 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.038 -11.436 0.219 26.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.220 4.220 3 Si 0.904 3.096 4 H -0.229 1.229 5 H -0.213 1.213 6 H -0.226 1.226 7 C -0.451 4.451 8 H 0.098 0.902 9 N -0.338 5.338 10 C -0.015 4.015 11 C -0.157 4.157 12 C 0.005 3.995 13 H 0.105 0.895 14 O -0.209 6.209 15 C 0.153 3.847 16 C -0.265 4.265 17 C -0.057 4.057 18 C -0.213 4.213 19 C 0.072 3.928 20 N -0.226 5.226 21 H 0.254 0.746 22 C 0.027 3.973 23 C -0.167 4.167 24 C -0.110 4.110 25 C -0.171 4.171 26 C -0.076 4.076 27 C -0.085 4.085 28 C -0.147 4.147 29 C -0.005 4.005 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.156 0.844 36 H 0.149 0.851 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.148 0.852 42 H 0.055 0.945 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 23.822 -9.846 0.310 25.779 hybrid contribution 0.361 -2.084 -0.487 2.171 sum 24.183 -11.931 -0.177 26.967 Atomic orbital electron populations 1.70894 1.05697 1.29308 1.50815 1.25827 0.96447 1.00892 0.98843 0.83839 0.73192 0.76287 0.76286 1.22875 1.21315 1.22628 1.20179 0.81802 0.96485 1.46584 0.90224 1.44680 1.06611 1.06287 1.76272 1.22043 0.89418 0.92007 0.98071 1.22661 0.97628 0.95514 0.99946 1.23979 0.87583 0.88931 0.99051 0.89514 1.86064 1.53727 1.46045 1.35050 1.18368 0.89855 0.88487 0.87940 1.21183 1.05934 1.06460 0.92931 1.20631 0.93462 0.92716 0.98852 1.19912 1.02149 1.05798 0.93422 1.17871 0.89402 0.92128 0.93422 1.41603 1.33657 1.38798 1.08588 0.74632 1.18208 0.97854 0.96980 0.84308 1.20026 1.00828 1.03671 0.92159 1.20818 0.98401 0.96456 0.95329 1.20937 0.97343 0.99365 0.99455 1.20699 0.97914 0.98367 0.90593 1.18623 0.97483 0.99008 0.93428 1.17874 1.00420 1.02621 0.93773 1.22029 0.87493 0.91332 0.99638 0.92771 0.94833 0.92928 0.90552 0.89984 0.84392 0.85110 0.85967 0.86166 0.85655 0.85701 0.85151 0.94516 0.93141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.11 13.70 55.49 0.76 -28.35 16 2 C -0.02 -0.61 5.50 -17.43 -0.10 -0.70 16 3 Si 1.07 26.55 24.52 -169.99 -4.17 22.39 16 4 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 5 H -0.29 -6.46 5.48 56.52 0.31 -6.15 16 6 H -0.30 -7.04 6.77 56.52 0.38 -6.66 16 7 C -0.32 -9.29 10.56 -15.06 -0.16 -9.45 16 8 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 9 N -0.61 -14.97 3.34 -169.94 -0.57 -15.54 16 10 C 0.11 2.35 4.64 -3.06 -0.01 2.34 16 11 C -0.12 -2.03 6.68 -24.89 -0.17 -2.19 16 12 C 0.06 1.06 2.81 -24.46 -0.07 0.99 16 13 H 0.09 1.42 6.30 -51.93 -0.33 1.10 16 14 O -0.30 -4.90 9.94 -19.27 -0.19 -5.10 16 15 C 0.20 3.12 6.70 -38.97 -0.26 2.86 16 16 C -0.25 -3.47 8.93 -39.42 -0.35 -3.82 16 17 C -0.04 -0.44 10.01 -39.61 -0.40 -0.84 16 18 C -0.19 -2.12 10.06 -39.36 -0.40 -2.52 16 19 C 0.18 2.23 7.21 -83.83 -0.60 1.62 16 20 N -0.62 -6.45 6.13 -8.30 -0.05 -6.50 16 21 H 0.42 2.88 8.96 -40.82 -0.37 2.51 16 22 C 0.13 1.54 7.21 -83.81 -0.60 0.94 16 23 C -0.15 -1.40 10.07 -39.39 -0.40 -1.80 16 24 C -0.09 -0.84 10.01 -39.58 -0.40 -1.23 16 25 C -0.15 -1.58 10.03 -39.58 -0.40 -1.98 16 26 C -0.06 -0.74 10.09 -39.34 -0.40 -1.13 16 27 C -0.08 -1.15 6.35 -105.00 -0.67 -1.81 16 28 C -0.14 -2.12 6.29 -104.88 -0.66 -2.78 16 29 C 0.12 2.50 6.83 -2.41 -0.02 2.48 16 30 H 0.26 8.16 8.73 -40.82 -0.36 7.80 16 31 H 0.03 0.76 3.75 -51.93 -0.19 0.56 16 32 H 0.05 1.18 6.72 -51.93 -0.35 0.83 16 33 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.14 1.98 5.60 -52.48 -0.29 1.69 16 36 H 0.13 1.20 8.06 -52.48 -0.42 0.77 16 37 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 38 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 39 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 40 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 41 H 0.13 1.69 8.05 -52.49 -0.42 1.27 16 42 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.05 1.03 7.74 -51.93 -0.40 0.62 16 LS Contribution 345.59 15.07 5.21 5.21 Total: -1.00 -33.45 345.59 -10.48 -43.93 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -5.42 Total: 2.98 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: -6.05 Total: -19.02 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: 0.14 Total: -50.39 kcal Atomic # 8 Polarization: -4.90 SS G_CDS: -0.19 Total: -5.10 kcal Atomic # 14 Polarization: 26.55 SS G_CDS: -4.17 Total: 22.39 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.45 -10.48 -43.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226258331.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.551 kcal (2) G-P(sol) polarization free energy of solvation -33.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds