Wall clock time and date at job start Tue Mar 31 2020 13:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99496 * 2 1 4 4 H 1.48497 * 109.47156 * 353.81196 * 3 2 1 5 5 H 1.48497 * 109.47292 * 113.81241 * 3 2 1 6 6 H 1.48503 * 109.47209 * 233.81052 * 3 2 1 7 7 C 1.38810 * 120.00288 * 180.28194 * 2 1 3 8 8 H 1.07994 * 119.99868 * 15.39704 * 7 2 1 9 9 N 1.36940 * 119.99625 * 195.40591 * 7 2 1 10 10 C 1.47020 * 125.64876 * 8.20155 * 9 7 2 11 11 C 1.54329 * 107.27027 * 181.02420 * 10 9 7 12 12 C 1.55164 * 102.94129 * 22.19179 * 11 10 9 13 13 H 1.09001 * 111.00116 * 82.57392 * 12 11 10 14 14 O 1.42896 * 111.00686 * 206.38601 * 12 11 10 15 15 C 1.35850 * 117.00013 * 202.65194 * 14 12 11 16 16 C 1.38407 * 120.16591 * 354.60367 * 15 14 12 17 17 C 1.38512 * 120.16327 * 179.80895 * 16 15 14 18 18 C 1.37873 * 120.63798 * 0.45796 * 17 16 15 19 19 C 1.39192 * 120.15892 * 359.77674 * 18 17 16 20 20 N 1.38342 * 132.29545 * 179.97438 * 19 18 17 21 21 H 0.97004 * 124.85914 * 0.02562 * 20 19 18 22 22 C 1.38372 * 110.27646 * 180.02562 * 20 19 18 23 23 C 1.39154 * 132.34163 * 179.97438 * 22 20 19 24 24 C 1.37828 * 120.04173 * 179.97438 * 23 22 20 25 25 C 1.38653 * 120.57950 * 0.02562 * 24 23 22 26 26 C 1.37814 * 120.23437 * 359.97438 * 25 24 23 27 27 C 1.39302 * 119.77852 * 0.04582 * 26 25 24 28 28 C 1.39697 * 120.16092 * 174.88740 * 15 14 12 29 29 C 1.47422 * 125.64567 * 187.89720 * 9 7 2 30 30 H 0.97005 * 119.99281 * 185.15800 * 1 2 3 31 31 H 1.08994 * 109.88232 * 300.43893 * 10 9 7 32 32 H 1.09001 * 109.88256 * 61.45688 * 10 9 7 33 33 H 1.08993 * 110.72276 * 140.55305 * 11 10 9 34 34 H 1.08997 * 110.72274 * 263.83293 * 11 10 9 35 35 H 1.08004 * 119.91177 * 0.02562 * 16 15 14 36 36 H 1.08003 * 119.67756 * 180.21416 * 17 16 15 37 37 H 1.07995 * 119.92276 * 179.80725 * 18 17 16 38 38 H 1.07997 * 119.98167 * 0.02562 * 23 22 20 39 39 H 1.08004 * 119.71174 * 179.97438 * 24 23 22 40 40 H 1.08001 * 119.87971 * 180.02562 * 25 24 23 41 41 H 1.07996 * 120.11033 * 180.02562 * 26 25 24 42 42 H 1.09003 * 110.36681 * 274.74423 * 29 9 7 43 43 H 1.09004 * 110.36958 * 37.06394 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2921 2.7424 -0.1509 5 1 2.9871 1.7640 1.2809 6 1 3.2135 1.6333 -1.1300 7 6 2.0103 -1.2021 -0.0059 8 1 1.4994 -2.1193 -0.2588 9 7 3.3428 -1.2248 0.3090 10 6 4.1188 -0.0914 0.8331 11 6 5.5732 -0.5756 1.0122 12 6 5.6573 -1.7874 0.0467 13 1 5.8489 -1.4601 -0.9752 14 8 6.6519 -2.7182 0.4784 15 6 7.1677 -3.5506 -0.4632 16 6 6.6513 -3.5531 -1.7474 17 6 7.1799 -4.3990 -2.7084 18 6 8.2168 -5.2533 -2.3988 19 6 8.7481 -5.2708 -1.1124 20 7 9.7663 -6.0087 -0.5357 21 1 10.2968 -6.6769 -0.9973 22 6 9.9195 -5.6571 0.7938 23 6 10.7880 -6.1007 1.7865 24 6 10.7192 -5.5635 3.0539 25 6 9.7886 -4.5803 3.3538 26 6 8.9201 -4.1280 2.3842 27 6 8.9785 -4.6627 1.0992 28 6 8.2180 -4.4125 -0.1386 29 6 4.2353 -2.3916 0.1847 30 1 -0.4849 -0.8367 0.0755 31 1 4.0885 0.7373 0.1257 32 1 3.7104 0.2254 1.7928 33 1 6.2777 0.2020 0.7173 34 1 5.7515 -0.8891 2.0408 35 1 5.8365 -2.8913 -2.0015 36 1 6.7732 -4.3920 -3.7089 37 1 8.6180 -5.9101 -3.1563 38 1 11.5168 -6.8657 1.5635 39 1 11.3955 -5.9120 3.8205 40 1 9.7449 -4.1670 4.3506 41 1 8.1963 -3.3619 2.6198 42 1 4.1705 -3.0154 1.0762 43 1 3.9816 -2.9703 -0.7035 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226258331.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:30 Heat of formation + Delta-G solvation = 53.009479 kcal Electronic energy + Delta-G solvation = -26361.247299 eV Core-core repulsion = 22758.053199 eV Total energy + Delta-G solvation = -3603.194099 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.51818 -40.87175 -39.03238 -38.13775 -36.40382 -34.62988 -32.98527 -31.66164 -31.05593 -30.16851 -29.52031 -29.30362 -26.07171 -24.75782 -23.73314 -22.98684 -22.63990 -21.92749 -21.65022 -19.65553 -19.47888 -18.46723 -17.79949 -17.38055 -17.34920 -16.31610 -16.18984 -15.98543 -15.85157 -15.58125 -15.21488 -15.19934 -15.01043 -14.80539 -14.37879 -14.22374 -13.99234 -13.66246 -13.19835 -13.12287 -13.07064 -12.85396 -12.77556 -12.37953 -12.33346 -12.16235 -11.81762 -11.61606 -11.54265 -11.40814 -11.10747 -10.73579 -10.61553 -9.70889 -9.18401 -8.87777 -8.69865 -8.43319 -5.52734 -0.13879 0.15203 0.84854 0.96437 1.40729 1.50503 1.72131 1.86356 2.10627 2.54423 2.72831 2.98017 3.06414 3.30705 3.47932 3.57171 3.69727 3.70402 3.86242 4.01984 4.09282 4.13911 4.22296 4.25921 4.28761 4.38921 4.44736 4.53162 4.59640 4.61896 4.72274 4.77916 4.83675 4.90051 5.00712 5.07907 5.11438 5.28743 5.33540 5.44803 5.49359 5.53839 5.60178 5.67290 5.83940 6.03433 6.12293 6.40118 6.63519 6.76064 7.35435 8.00559 8.82929 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.019374 B = 0.003242 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.884603 B = 8633.441300 C = 9563.580605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.077 4.077 3 Si 1.108 2.892 4 H -0.311 1.311 5 H -0.249 1.249 6 H -0.277 1.277 7 C -0.317 4.317 8 H 0.045 0.955 9 N -0.629 5.629 10 C 0.099 3.901 11 C -0.109 4.109 12 C 0.079 3.921 13 H 0.097 0.903 14 O -0.304 6.304 15 C 0.169 3.831 16 C -0.257 4.257 17 C -0.042 4.042 18 C -0.178 4.178 19 C 0.170 3.830 20 N -0.604 5.604 21 H 0.434 0.566 22 C 0.120 3.880 23 C -0.141 4.141 24 C -0.087 4.087 25 C -0.152 4.152 26 C -0.083 4.083 27 C -0.119 4.119 28 C -0.170 4.170 29 C 0.120 3.880 30 H 0.248 0.752 31 H 0.038 0.962 32 H 0.045 0.955 33 H 0.112 0.888 34 H 0.092 0.908 35 H 0.129 0.871 36 H 0.158 0.842 37 H 0.158 0.842 38 H 0.153 0.847 39 H 0.161 0.839 40 H 0.145 0.855 41 H 0.116 0.884 42 H 0.026 0.974 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.412 -12.198 0.204 30.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.270 4.270 3 Si 0.935 3.065 4 H -0.240 1.240 5 H -0.174 1.174 6 H -0.204 1.204 7 C -0.445 4.445 8 H 0.063 0.937 9 N -0.358 5.358 10 C -0.024 4.024 11 C -0.146 4.146 12 C 0.022 3.978 13 H 0.114 0.886 14 O -0.216 6.216 15 C 0.123 3.877 16 C -0.277 4.277 17 C -0.061 4.061 18 C -0.199 4.199 19 C 0.064 3.936 20 N -0.215 5.215 21 H 0.274 0.726 22 C 0.016 3.984 23 C -0.162 4.162 24 C -0.106 4.106 25 C -0.171 4.171 26 C -0.102 4.102 27 C -0.123 4.123 28 C -0.174 4.174 29 C -0.006 4.006 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.130 0.870 34 H 0.111 0.889 35 H 0.147 0.853 36 H 0.176 0.824 37 H 0.175 0.825 38 H 0.171 0.829 39 H 0.178 0.822 40 H 0.162 0.838 41 H 0.134 0.866 42 H 0.044 0.956 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 28.267 -10.669 0.299 30.215 hybrid contribution -0.923 -2.088 -0.449 2.327 sum 27.344 -12.757 -0.150 30.174 Atomic orbital electron populations 1.71005 1.07016 1.28489 1.53937 1.27207 0.96425 1.04612 0.98712 0.83423 0.72637 0.71683 0.78738 1.24021 1.17362 1.20422 1.20056 0.84031 0.95231 1.45202 0.93681 1.44707 1.05923 1.08605 1.76575 1.22210 0.91671 0.91241 0.97323 1.22641 0.95184 0.96139 1.00649 1.23629 0.85586 0.88789 0.99809 0.88568 1.86043 1.53420 1.46472 1.35668 1.18626 0.91166 0.89522 0.88384 1.21254 1.06036 1.07236 0.93177 1.20969 0.93521 0.92079 0.99529 1.20306 1.00997 1.05157 0.93462 1.18117 0.89843 0.92025 0.93651 1.41528 1.33111 1.38641 1.08194 0.72552 1.18483 0.97961 0.96774 0.85174 1.20466 1.00417 1.03699 0.91601 1.21275 0.97981 0.95264 0.96052 1.21249 0.96744 0.99362 0.99735 1.20771 0.99003 0.99115 0.91276 1.18917 0.98856 1.00751 0.93768 1.18245 1.00759 1.03207 0.95207 1.22067 0.89523 0.90266 0.98741 0.94355 0.94475 0.93670 0.86998 0.88946 0.85311 0.82415 0.82458 0.82917 0.82152 0.83753 0.86621 0.95590 0.93803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.78 13.70 21.65 0.30 -62.48 16 2 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 3 Si 1.11 53.33 24.52 68.60 1.68 55.02 16 4 H -0.31 -15.43 7.11 99.48 0.71 -14.72 16 5 H -0.25 -10.45 5.48 99.48 0.54 -9.90 16 6 H -0.28 -12.31 6.77 99.48 0.67 -11.64 16 7 C -0.32 -18.90 10.56 84.03 0.89 -18.01 16 8 H 0.05 2.91 8.06 -2.91 -0.02 2.89 16 9 N -0.63 -31.35 3.34 -691.55 -2.31 -33.66 16 10 C 0.10 4.15 4.64 86.73 0.40 4.55 16 11 C -0.11 -3.47 6.68 31.79 0.21 -3.26 16 12 C 0.08 2.69 2.81 32.07 0.09 2.78 16 13 H 0.10 3.09 6.30 -2.39 -0.02 3.07 16 14 O -0.30 -10.16 9.94 -91.87 -0.91 -11.07 16 15 C 0.17 5.33 6.70 22.66 0.15 5.49 16 16 C -0.26 -7.25 8.93 22.38 0.20 -7.05 16 17 C -0.04 -0.92 10.01 22.25 0.22 -0.70 16 18 C -0.18 -3.50 10.06 22.41 0.23 -3.28 16 19 C 0.17 4.02 7.21 38.83 0.28 4.30 16 20 N -0.60 -11.23 6.13 -180.17 -1.10 -12.34 16 21 H 0.43 4.63 8.96 -92.71 -0.83 3.80 16 22 C 0.12 2.62 7.21 38.83 0.28 2.90 16 23 C -0.14 -2.25 10.07 22.39 0.23 -2.02 16 24 C -0.09 -1.31 10.01 22.27 0.22 -1.08 16 25 C -0.15 -2.90 10.03 22.27 0.22 -2.67 16 26 C -0.08 -2.14 10.09 22.43 0.23 -1.92 16 27 C -0.12 -3.32 6.35 -20.11 -0.13 -3.45 16 28 C -0.17 -5.05 6.29 -20.03 -0.13 -5.18 16 29 C 0.12 5.06 6.83 86.93 0.59 5.66 16 30 H 0.25 16.29 8.73 -92.70 -0.81 15.48 16 31 H 0.04 1.57 3.75 -2.39 -0.01 1.56 16 32 H 0.05 1.95 6.72 -2.39 -0.02 1.94 16 33 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 34 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 35 H 0.13 3.76 5.60 -2.91 -0.02 3.74 16 36 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 37 H 0.16 1.94 8.06 -2.91 -0.02 1.91 16 38 H 0.15 1.40 8.06 -2.91 -0.02 1.37 16 39 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 40 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 41 H 0.12 3.16 8.05 -2.91 -0.02 3.14 16 42 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.04 1.87 7.74 -2.38 -0.02 1.85 16 Total: -1.00 -77.03 345.59 2.30 -74.73 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -0.01 Total: 16.93 kcal Atomic # 6 Polarization: -31.79 SS G_CDS: 4.66 Total: -27.13 kcal Atomic # 7 Polarization: -105.36 SS G_CDS: -3.12 Total: -108.48 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: -0.91 Total: -11.07 kcal Atomic # 14 Polarization: 53.33 SS G_CDS: 1.68 Total: 55.02 kcal Total: -77.03 2.30 -74.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226258331.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.741 kcal (2) G-P(sol) polarization free energy of solvation -77.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds