Wall clock time and date at job start Tue Mar 31 2020 13:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00018 * 2 1 4 4 H 1.48497 * 109.46772 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47345 * 119.99988 * 3 2 1 6 6 H 1.48504 * 109.46806 * 240.00253 * 3 2 1 7 7 C 1.38818 * 120.00184 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99687 * 179.97438 * 7 2 1 9 9 N 1.36928 * 119.99840 * 0.02562 * 7 2 1 10 10 C 1.47023 * 125.65276 * 359.68808 * 9 7 2 11 11 C 1.54334 * 107.27132 * 178.85308 * 10 9 7 12 12 C 1.55163 * 103.01622 * 338.14061 * 11 10 9 13 13 H 1.09003 * 111.03446 * 277.21767 * 12 11 10 14 14 O 1.42902 * 111.00307 * 153.38341 * 12 11 10 15 15 C 1.35848 * 116.99945 * 162.34722 * 14 12 11 16 16 C 1.38401 * 120.16052 * 5.31040 * 15 14 12 17 17 C 1.38512 * 120.17790 * 179.97438 * 16 15 14 18 18 C 1.37874 * 120.62136 * 0.02562 * 17 16 15 19 19 C 1.39194 * 120.15535 * 359.97438 * 18 17 16 20 20 N 1.38346 * 132.25704 * 180.02562 * 19 18 17 21 21 H 0.97001 * 124.86875 * 359.95593 * 20 19 18 22 22 C 1.38373 * 110.26271 * 179.97438 * 20 19 18 23 23 C 1.39149 * 132.31083 * 180.02562 * 22 20 19 24 24 C 1.37824 * 120.04552 * 180.02562 * 23 22 20 25 25 C 1.38646 * 120.56017 * 359.97169 * 24 23 22 26 26 C 1.37819 * 120.24659 * 359.97438 * 25 24 23 27 27 C 1.39299 * 119.79481 * 0.02562 * 26 25 24 28 28 C 1.39701 * 120.15471 * 185.03250 * 15 14 12 29 29 C 1.47426 * 125.64685 * 179.97438 * 9 7 2 30 30 H 0.96992 * 120.00347 * 0.02562 * 1 2 3 31 31 H 1.09007 * 109.88015 * 298.40043 * 10 9 7 32 32 H 1.08999 * 109.88135 * 59.55827 * 10 9 7 33 33 H 1.08999 * 110.84709 * 219.67661 * 11 10 9 34 34 H 1.08998 * 110.66919 * 96.52076 * 11 10 9 35 35 H 1.07997 * 119.90908 * 0.02836 * 16 15 14 36 36 H 1.08001 * 119.68906 * 180.02562 * 17 16 15 37 37 H 1.07997 * 119.92429 * 179.97438 * 18 17 16 38 38 H 1.08000 * 119.97319 * 359.95527 * 23 22 20 39 39 H 1.08005 * 119.71731 * 179.97438 * 24 23 22 40 40 H 1.08003 * 119.87273 * 180.02562 * 25 24 23 41 41 H 1.08006 * 120.09772 * 179.97438 * 26 25 24 42 42 H 1.09002 * 110.37165 * 322.92689 * 29 9 7 43 43 H 1.08999 * 110.36884 * 85.14630 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2851 2.7464 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6964 -1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1374 -2.5328 0.0065 11 6 -0.4484 -4.0442 -0.0254 12 6 0.8519 -4.6563 -0.6104 13 1 0.8570 -4.5971 -1.6988 14 8 1.0249 -6.0055 -0.1726 15 6 1.8938 -6.7760 -0.8775 16 6 2.6476 -6.2198 -1.8963 17 6 3.5341 -7.0049 -2.6149 18 6 3.6773 -8.3456 -2.3271 19 6 2.9291 -8.9255 -1.3065 20 7 2.8722 -10.2168 -0.8131 21 1 3.3971 -10.9614 -1.1462 22 6 1.9588 -10.2938 0.2234 23 6 1.5464 -11.3485 1.0320 24 6 0.5984 -11.1383 2.0101 25 6 0.0477 -9.8801 2.1994 26 6 0.4441 -8.8228 1.4092 27 6 1.4014 -9.0210 0.4169 28 6 2.0351 -8.1322 -0.5735 29 6 1.9336 -3.7311 0.0005 30 1 -0.4850 0.8399 -0.0004 31 1 -0.5504 -2.0864 0.9112 32 1 -0.5613 -2.0503 -0.8742 33 1 -1.2986 -4.2516 -0.6752 34 1 -0.6330 -4.4203 0.9808 35 1 2.5449 -5.1707 -2.1311 36 1 4.1187 -6.5626 -3.4080 37 1 4.3715 -8.9474 -2.8948 38 1 1.9687 -12.3326 0.8923 39 1 0.2818 -11.9608 2.6345 40 1 -0.6941 -9.7278 2.9694 41 1 0.0132 -7.8437 1.5585 42 1 2.8328 -3.7406 -0.6155 43 1 2.1688 -4.0411 1.0187 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226258334.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:34 Heat of formation + Delta-G solvation = 63.074129 kcal Electronic energy + Delta-G solvation = -26255.577729 eV Core-core repulsion = 22652.820065 eV Total energy + Delta-G solvation = -3602.757663 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.53371 -39.46875 -37.72882 -36.45957 -35.30886 -32.44707 -31.85909 -30.28429 -29.31004 -28.88331 -28.30725 -27.31520 -24.64071 -23.74749 -22.39616 -22.06926 -20.98027 -20.24628 -20.02326 -18.24739 -17.55526 -17.05176 -16.68994 -16.13463 -15.20270 -15.01345 -14.93258 -14.72861 -14.42692 -14.39902 -13.95424 -13.76890 -13.60477 -13.38430 -12.73489 -12.47726 -12.27629 -12.03937 -11.96618 -11.87740 -11.42490 -11.36234 -11.09419 -10.97260 -10.86971 -10.73599 -10.33451 -10.21862 -10.07744 -9.89275 -9.72518 -9.58748 -8.68226 -8.63233 -7.88370 -7.42726 -6.89312 -5.74768 -3.09319 0.83951 1.15491 1.84440 1.92444 2.80770 3.39512 3.41723 3.44657 3.47733 3.71248 3.98026 4.47941 4.54750 4.59391 4.93936 4.96494 5.13717 5.15909 5.20612 5.23505 5.29218 5.35750 5.45033 5.47452 5.55739 5.63000 5.69507 5.71161 5.91270 5.97694 6.17370 6.23919 6.30549 6.35976 6.42481 6.45358 6.50667 6.52905 6.58530 6.63498 6.68968 6.86398 7.04704 7.40471 7.50339 7.54587 7.69991 7.79362 8.20533 9.17320 9.77005 10.41606 11.36970 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.019797 B = 0.003030 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.033260 B = 9237.620815 C =10238.843224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.006 4.006 3 Si 0.914 3.086 4 H -0.290 1.290 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.231 4.231 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.179 3.821 11 C -0.134 4.134 12 C 0.065 3.935 13 H 0.082 0.918 14 O -0.299 6.299 15 C 0.203 3.797 16 C -0.245 4.245 17 C -0.038 4.038 18 C -0.194 4.194 19 C 0.176 3.824 20 N -0.618 5.618 21 H 0.416 0.584 22 C 0.129 3.871 23 C -0.146 4.146 24 C -0.092 4.092 25 C -0.152 4.152 26 C -0.057 4.057 27 C -0.080 4.080 28 C -0.144 4.144 29 C 0.119 3.881 30 H 0.254 0.746 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.139 0.861 36 H 0.130 0.870 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.131 0.869 42 H 0.044 0.956 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.921 -22.704 -1.824 22.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.359 4.359 8 H 0.097 0.903 9 N -0.330 5.330 10 C 0.054 3.946 11 C -0.172 4.172 12 C 0.008 3.992 13 H 0.100 0.900 14 O -0.210 6.210 15 C 0.156 3.844 16 C -0.265 4.265 17 C -0.057 4.057 18 C -0.215 4.215 19 C 0.071 3.929 20 N -0.227 5.227 21 H 0.253 0.747 22 C 0.026 3.974 23 C -0.168 4.168 24 C -0.111 4.111 25 C -0.171 4.171 26 C -0.075 4.075 27 C -0.084 4.084 28 C -0.148 4.148 29 C -0.008 4.008 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.157 0.843 36 H 0.148 0.852 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.149 0.851 42 H 0.063 0.937 43 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 2.773 -22.574 -1.673 22.805 hybrid contribution 0.874 0.624 -0.343 1.128 sum 3.648 -21.950 -2.016 22.342 Atomic orbital electron populations 1.69925 1.04900 1.25326 1.56805 1.24812 0.95748 0.97707 1.02005 0.86169 0.78450 0.83004 0.77951 1.21541 1.21099 1.21108 1.19014 0.90475 0.82156 1.44255 0.90350 1.44329 1.01659 0.99569 1.87434 1.21206 0.84449 0.87208 1.01714 1.23020 0.94584 0.98810 1.00836 1.23892 0.98806 0.77587 0.98900 0.90021 1.86086 1.57721 1.24147 1.53074 1.18393 0.88327 0.88197 0.89523 1.21213 1.02767 1.01739 1.00772 1.20627 0.95586 0.92109 0.97363 1.19891 1.05051 0.95739 1.00854 1.17875 0.96436 0.83415 0.95149 1.41599 1.39829 1.08916 1.32365 0.74698 1.18211 0.92681 0.95465 0.91050 1.20012 1.01874 0.96743 0.98131 1.20805 0.95955 0.97298 0.97013 1.20932 1.02266 0.92725 1.01216 1.20716 0.94524 0.99581 0.92728 1.18627 0.99860 0.91597 0.98346 1.17883 1.04118 0.91032 1.01802 1.21968 0.94294 0.86525 0.98018 0.93571 0.93266 0.93013 0.91323 0.91155 0.84323 0.85200 0.86078 0.86232 0.85710 0.85728 0.85093 0.93750 0.95279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.78 10.31 55.49 0.57 -26.21 16 2 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 3 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.23 -6.42 10.28 -15.06 -0.15 -6.57 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.60 -15.39 3.39 -170.07 -0.58 -15.97 16 10 C 0.18 4.30 5.38 -3.06 -0.02 4.28 16 11 C -0.13 -2.55 6.68 -24.89 -0.17 -2.71 16 12 C 0.06 1.20 2.82 -24.59 -0.07 1.13 16 13 H 0.08 1.45 6.62 -51.93 -0.34 1.11 16 14 O -0.30 -5.27 9.96 -19.26 -0.19 -5.46 16 15 C 0.20 3.33 6.66 -38.98 -0.26 3.07 16 16 C -0.24 -3.63 8.73 -39.42 -0.34 -3.97 16 17 C -0.04 -0.46 10.01 -39.61 -0.40 -0.86 16 18 C -0.19 -2.25 10.06 -39.36 -0.40 -2.64 16 19 C 0.18 2.32 7.21 -83.83 -0.60 1.72 16 20 N -0.62 -6.78 6.13 -8.30 -0.05 -6.83 16 21 H 0.42 3.07 8.96 -40.82 -0.37 2.70 16 22 C 0.13 1.61 7.21 -83.80 -0.60 1.00 16 23 C -0.15 -1.48 10.06 -39.40 -0.40 -1.88 16 24 C -0.09 -0.89 10.01 -39.58 -0.40 -1.29 16 25 C -0.15 -1.68 10.03 -39.58 -0.40 -2.07 16 26 C -0.06 -0.78 10.09 -39.34 -0.40 -1.17 16 27 C -0.08 -1.18 6.35 -105.00 -0.67 -1.85 16 28 C -0.14 -2.25 6.29 -104.88 -0.66 -2.91 16 29 C 0.12 2.52 6.60 -2.54 -0.02 2.51 16 30 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.05 1.30 7.52 -51.92 -0.39 0.91 16 32 H 0.05 1.35 7.37 -51.93 -0.38 0.97 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.14 2.10 5.30 -52.49 -0.28 1.82 16 36 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 37 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 38 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 39 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 40 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 41 H 0.13 1.81 8.06 -52.48 -0.42 1.39 16 42 H 0.04 0.91 7.24 -51.93 -0.38 0.53 16 43 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 352.54 15.07 5.31 5.31 Total: -1.00 -31.71 352.54 -11.48 -43.19 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -5.49 Total: 3.53 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -6.04 Total: -14.50 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: -0.06 Total: -49.01 kcal Atomic # 8 Polarization: -5.27 SS G_CDS: -0.19 Total: -5.46 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.71 -11.48 -43.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226258334.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.268 kcal (2) G-P(sol) polarization free energy of solvation -31.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds