Wall clock time and date at job start Tue Mar 31 2020 13:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00018 * 2 1 4 4 H 1.48497 * 109.46772 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.47345 * 119.99988 * 3 2 1 6 6 H 1.48504 * 109.46806 * 240.00253 * 3 2 1 7 7 C 1.38818 * 120.00184 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99687 * 179.97438 * 7 2 1 9 9 N 1.36928 * 119.99840 * 0.02562 * 7 2 1 10 10 C 1.47023 * 125.65276 * 359.68808 * 9 7 2 11 11 C 1.54334 * 107.27132 * 178.85308 * 10 9 7 12 12 C 1.55163 * 103.01622 * 338.14061 * 11 10 9 13 13 H 1.09003 * 111.03446 * 277.21767 * 12 11 10 14 14 O 1.42902 * 111.00307 * 153.38341 * 12 11 10 15 15 C 1.35848 * 116.99945 * 162.34722 * 14 12 11 16 16 C 1.38401 * 120.16052 * 5.31040 * 15 14 12 17 17 C 1.38512 * 120.17790 * 179.97438 * 16 15 14 18 18 C 1.37874 * 120.62136 * 0.02562 * 17 16 15 19 19 C 1.39194 * 120.15535 * 359.97438 * 18 17 16 20 20 N 1.38346 * 132.25704 * 180.02562 * 19 18 17 21 21 H 0.97001 * 124.86875 * 359.95593 * 20 19 18 22 22 C 1.38373 * 110.26271 * 179.97438 * 20 19 18 23 23 C 1.39149 * 132.31083 * 180.02562 * 22 20 19 24 24 C 1.37824 * 120.04552 * 180.02562 * 23 22 20 25 25 C 1.38646 * 120.56017 * 359.97169 * 24 23 22 26 26 C 1.37819 * 120.24659 * 359.97438 * 25 24 23 27 27 C 1.39299 * 119.79481 * 0.02562 * 26 25 24 28 28 C 1.39701 * 120.15471 * 185.03250 * 15 14 12 29 29 C 1.47426 * 125.64685 * 179.97438 * 9 7 2 30 30 H 0.96992 * 120.00347 * 0.02562 * 1 2 3 31 31 H 1.09007 * 109.88015 * 298.40043 * 10 9 7 32 32 H 1.08999 * 109.88135 * 59.55827 * 10 9 7 33 33 H 1.08999 * 110.84709 * 219.67661 * 11 10 9 34 34 H 1.08998 * 110.66919 * 96.52076 * 11 10 9 35 35 H 1.07997 * 119.90908 * 0.02836 * 16 15 14 36 36 H 1.08001 * 119.68906 * 180.02562 * 17 16 15 37 37 H 1.07997 * 119.92429 * 179.97438 * 18 17 16 38 38 H 1.08000 * 119.97319 * 359.95527 * 23 22 20 39 39 H 1.08005 * 119.71731 * 179.97438 * 24 23 22 40 40 H 1.08003 * 119.87273 * 180.02562 * 25 24 23 41 41 H 1.08006 * 120.09772 * 179.97438 * 26 25 24 42 42 H 1.09002 * 110.37165 * 322.92689 * 29 9 7 43 43 H 1.08999 * 110.36884 * 85.14630 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2851 2.7464 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6964 -1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1374 -2.5328 0.0065 11 6 -0.4484 -4.0442 -0.0254 12 6 0.8519 -4.6563 -0.6104 13 1 0.8570 -4.5971 -1.6988 14 8 1.0249 -6.0055 -0.1726 15 6 1.8938 -6.7760 -0.8775 16 6 2.6476 -6.2198 -1.8963 17 6 3.5341 -7.0049 -2.6149 18 6 3.6773 -8.3456 -2.3271 19 6 2.9291 -8.9255 -1.3065 20 7 2.8722 -10.2168 -0.8131 21 1 3.3971 -10.9614 -1.1462 22 6 1.9588 -10.2938 0.2234 23 6 1.5464 -11.3485 1.0320 24 6 0.5984 -11.1383 2.0101 25 6 0.0477 -9.8801 2.1994 26 6 0.4441 -8.8228 1.4092 27 6 1.4014 -9.0210 0.4169 28 6 2.0351 -8.1322 -0.5735 29 6 1.9336 -3.7311 0.0005 30 1 -0.4850 0.8399 -0.0004 31 1 -0.5504 -2.0864 0.9112 32 1 -0.5613 -2.0503 -0.8742 33 1 -1.2986 -4.2516 -0.6752 34 1 -0.6330 -4.4203 0.9808 35 1 2.5449 -5.1707 -2.1311 36 1 4.1187 -6.5626 -3.4080 37 1 4.3715 -8.9474 -2.8948 38 1 1.9687 -12.3326 0.8923 39 1 0.2818 -11.9608 2.6345 40 1 -0.6941 -9.7278 2.9694 41 1 0.0132 -7.8437 1.5585 42 1 2.8328 -3.7406 -0.6155 43 1 2.1688 -4.0411 1.0187 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226258334.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:33 Heat of formation + Delta-G solvation = 45.801110 kcal Electronic energy + Delta-G solvation = -26256.326743 eV Core-core repulsion = 22652.820065 eV Total energy + Delta-G solvation = -3603.506678 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.48861 -40.77112 -38.85972 -37.95241 -36.36092 -34.33097 -32.90844 -31.46201 -30.95203 -29.93260 -29.32732 -28.96289 -26.55411 -24.78197 -23.57737 -22.95883 -22.32903 -21.69813 -21.57300 -19.39853 -19.02668 -18.41103 -17.72653 -17.29229 -16.71967 -16.56925 -16.08076 -15.89658 -15.69423 -15.58430 -15.27363 -15.01526 -14.78621 -14.35261 -14.21994 -14.03280 -13.89540 -13.59450 -13.06741 -12.93182 -12.84035 -12.72901 -12.54971 -12.37038 -12.18903 -12.13085 -12.09259 -11.84571 -11.80273 -11.50336 -11.41336 -10.73377 -10.59153 -9.67867 -8.98560 -8.84766 -8.40376 -7.88074 -5.25754 -0.11359 0.18190 0.87309 0.98881 1.46244 1.49847 1.56157 1.90658 2.16605 2.49729 2.76225 3.00088 3.30672 3.58045 3.61406 3.67381 3.72756 3.91450 3.98712 4.08300 4.13504 4.23773 4.27836 4.31654 4.41601 4.53062 4.55009 4.61524 4.66338 4.74406 4.81764 4.92646 4.98582 5.03360 5.13152 5.32767 5.36542 5.40152 5.52158 5.55697 5.56900 5.61920 5.68126 5.69358 5.87497 6.12453 6.15017 6.46449 6.66527 7.05074 7.69690 8.34017 9.22240 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.019797 B = 0.003030 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.033260 B = 9237.620815 C =10238.843224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.061 4.061 3 Si 0.982 3.018 4 H -0.292 1.292 5 H -0.278 1.278 6 H -0.274 1.274 7 C -0.250 4.250 8 H 0.083 0.917 9 N -0.622 5.622 10 C 0.188 3.812 11 C -0.122 4.122 12 C 0.085 3.915 13 H 0.089 0.911 14 O -0.308 6.308 15 C 0.169 3.831 16 C -0.256 4.256 17 C -0.041 4.041 18 C -0.178 4.178 19 C 0.170 3.830 20 N -0.603 5.603 21 H 0.434 0.566 22 C 0.121 3.879 23 C -0.140 4.140 24 C -0.087 4.087 25 C -0.152 4.152 26 C -0.085 4.085 27 C -0.119 4.119 28 C -0.172 4.172 29 C 0.120 3.880 30 H 0.250 0.750 31 H 0.016 0.984 32 H 0.025 0.975 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.129 0.871 36 H 0.160 0.840 37 H 0.159 0.841 38 H 0.155 0.845 39 H 0.162 0.838 40 H 0.144 0.856 41 H 0.112 0.888 42 H 0.051 0.949 43 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.460 -25.786 -2.426 26.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.255 4.255 3 Si 0.810 3.190 4 H -0.218 1.218 5 H -0.204 1.204 6 H -0.200 1.200 7 C -0.378 4.378 8 H 0.101 0.899 9 N -0.350 5.350 10 C 0.063 3.937 11 C -0.160 4.160 12 C 0.028 3.972 13 H 0.107 0.893 14 O -0.221 6.221 15 C 0.122 3.878 16 C -0.276 4.276 17 C -0.060 4.060 18 C -0.200 4.200 19 C 0.064 3.936 20 N -0.214 5.214 21 H 0.275 0.725 22 C 0.017 3.983 23 C -0.161 4.161 24 C -0.106 4.106 25 C -0.171 4.171 26 C -0.104 4.104 27 C -0.123 4.123 28 C -0.177 4.177 29 C -0.006 4.006 30 H 0.059 0.941 31 H 0.034 0.966 32 H 0.043 0.957 33 H 0.112 0.888 34 H 0.094 0.906 35 H 0.147 0.853 36 H 0.178 0.822 37 H 0.177 0.823 38 H 0.172 0.828 39 H 0.179 0.821 40 H 0.161 0.839 41 H 0.130 0.870 42 H 0.069 0.931 43 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 4.344 -25.718 -2.282 26.182 hybrid contribution 0.433 1.404 -0.107 1.473 sum 4.777 -24.314 -2.389 24.894 Atomic orbital electron populations 1.70143 1.06292 1.25677 1.57679 1.25684 0.96682 1.01055 1.02044 0.85104 0.77155 0.78463 0.78296 1.21805 1.20411 1.19993 1.19416 0.91061 0.83377 1.43980 0.89916 1.44606 1.02462 1.00607 1.87308 1.20937 0.83770 0.90208 0.98773 1.22841 0.95909 0.95206 1.02008 1.23486 0.96804 0.78026 0.98845 0.89291 1.86052 1.58854 1.23283 1.53866 1.18674 0.89482 0.88727 0.90875 1.21274 1.03580 1.01639 1.01071 1.20979 0.95022 0.92396 0.97564 1.20310 1.04236 0.95667 0.99745 1.18121 0.96122 0.84086 0.95269 1.41512 1.39510 1.08698 1.31717 0.72513 1.18477 0.92892 0.95243 0.91711 1.20467 1.01174 0.97503 0.96956 1.21267 0.94926 0.97528 0.96830 1.21237 1.02299 0.92755 1.00832 1.20767 0.95622 0.99848 0.94134 1.18922 1.01253 0.92882 0.99257 1.18266 1.05312 0.91140 1.02955 1.22017 0.95462 0.85385 0.97723 0.94104 0.96616 0.95655 0.88816 0.90578 0.85325 0.82246 0.82349 0.82786 0.82071 0.83857 0.86974 0.93064 0.96358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.18 10.31 21.65 0.22 -56.96 16 2 C -0.06 -3.51 5.49 84.86 0.47 -3.05 16 3 Si 0.98 45.86 29.55 68.60 2.03 47.89 16 4 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 7 C -0.25 -14.27 10.28 84.04 0.86 -13.40 16 8 H 0.08 4.51 7.83 -2.91 -0.02 4.49 16 9 N -0.62 -33.06 3.39 -691.99 -2.35 -35.41 16 10 C 0.19 9.50 5.38 86.73 0.47 9.97 16 11 C -0.12 -4.77 6.68 31.79 0.21 -4.55 16 12 C 0.09 3.25 2.82 31.98 0.09 3.34 16 13 H 0.09 3.24 6.62 -2.39 -0.02 3.23 16 14 O -0.31 -11.35 9.96 -91.84 -0.91 -12.27 16 15 C 0.17 5.68 6.66 22.66 0.15 5.84 16 16 C -0.26 -7.59 8.73 22.37 0.20 -7.40 16 17 C -0.04 -0.92 10.01 22.25 0.22 -0.70 16 18 C -0.18 -3.65 10.06 22.41 0.23 -3.42 16 19 C 0.17 4.21 7.21 38.83 0.28 4.49 16 20 N -0.60 -11.79 6.13 -180.16 -1.10 -12.89 16 21 H 0.43 4.93 8.96 -92.71 -0.83 4.10 16 22 C 0.12 2.78 7.21 38.83 0.28 3.06 16 23 C -0.14 -2.37 10.06 22.39 0.23 -2.15 16 24 C -0.09 -1.41 10.01 22.27 0.22 -1.18 16 25 C -0.15 -3.16 10.03 22.27 0.22 -2.94 16 26 C -0.09 -2.38 10.09 22.43 0.23 -2.15 16 27 C -0.12 -3.54 6.35 -20.11 -0.13 -3.67 16 28 C -0.17 -5.43 6.29 -20.03 -0.13 -5.55 16 29 C 0.12 5.30 6.60 86.85 0.57 5.87 16 30 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 31 H 0.02 0.88 7.52 -2.38 -0.02 0.86 16 32 H 0.03 1.39 7.37 -2.39 -0.02 1.37 16 33 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 34 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 35 H 0.13 3.98 5.30 -2.91 -0.02 3.96 16 36 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 37 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 38 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 39 H 0.16 1.43 8.06 -2.91 -0.02 1.41 16 40 H 0.14 2.31 8.06 -2.91 -0.02 2.28 16 41 H 0.11 3.39 8.06 -2.91 -0.02 3.37 16 42 H 0.05 2.16 7.24 -2.39 -0.02 2.15 16 43 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -72.41 352.54 2.77 -69.64 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: 0.21 Total: 17.60 kcal Atomic # 6 Polarization: -22.27 SS G_CDS: 4.67 Total: -17.60 kcal Atomic # 7 Polarization: -102.04 SS G_CDS: -3.23 Total: -105.27 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: -0.91 Total: -12.27 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -72.41 2.77 -69.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226258334.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.444 kcal (2) G-P(sol) polarization free energy of solvation -72.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds