Wall clock time and date at job start Tue Mar 31 2020 13:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99918 * 2 1 4 4 H 1.48500 * 109.47121 * 270.00182 * 3 2 1 5 5 H 1.48507 * 109.47081 * 29.99900 * 3 2 1 6 6 H 1.48494 * 109.47120 * 149.99725 * 3 2 1 7 7 C 1.37874 * 120.00250 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00110 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99965 * 0.02562 * 7 2 1 10 10 N 1.46889 * 109.46926 * 179.97438 * 9 7 2 11 11 C 1.47966 * 110.99739 * 169.99921 * 10 9 7 12 12 C 1.53940 * 86.17928 * 222.41786 * 11 10 9 13 13 O 1.42903 * 113.73200 * 138.08198 * 12 11 10 14 14 C 1.35855 * 116.99756 * 157.95868 * 13 12 11 15 15 C 1.38400 * 120.16564 * 6.05197 * 14 13 12 16 16 C 1.38509 * 120.16678 * 179.70558 * 15 14 13 17 17 C 1.37885 * 120.63599 * 0.03573 * 16 15 14 18 18 C 1.39191 * 120.15267 * 359.97438 * 17 16 15 19 19 N 1.38341 * 132.28281 * 179.97438 * 18 17 16 20 20 H 0.96998 * 124.87112 * 359.96407 * 19 18 17 21 21 C 1.38381 * 110.27028 * 179.97438 * 19 18 17 22 22 C 1.39148 * 132.33786 * 179.97438 * 21 19 18 23 23 C 1.37823 * 120.04732 * 180.09494 * 22 21 19 24 24 C 1.38654 * 120.57267 * 359.97438 * 23 22 21 25 25 C 1.37815 * 120.23484 * 359.97438 * 24 23 22 26 26 C 1.39300 * 119.78511 * 0.05503 * 25 24 23 27 27 C 1.39694 * 120.15823 * 185.76939 * 14 13 12 28 28 C 1.47965 * 111.00212 * 70.64049 * 10 9 7 29 29 H 0.97002 * 119.99811 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46736 * 59.99113 * 9 7 2 31 31 H 1.09005 * 109.46774 * 299.99825 * 9 7 2 32 32 H 1.08999 * 113.76166 * 108.09938 * 11 10 9 33 33 H 1.09002 * 113.75771 * 336.73391 * 11 10 9 34 34 H 1.08999 * 113.73374 * 269.25255 * 12 11 10 35 35 H 1.07998 * 119.91267 * 359.71620 * 15 14 13 36 36 H 1.08005 * 119.68219 * 180.02562 * 16 15 14 37 37 H 1.07996 * 119.91921 * 180.02562 * 17 16 15 38 38 H 1.08005 * 119.97893 * 0.12182 * 22 21 19 39 39 H 1.07998 * 119.71405 * 179.97438 * 23 22 21 40 40 H 1.07999 * 119.88076 * 179.97438 * 24 23 22 41 41 H 1.08001 * 120.10238 * 180.02562 * 25 24 23 42 42 H 1.09000 * 113.75401 * 23.26434 * 28 10 9 43 43 H 1.08994 * 113.76121 * 251.89917 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6156 0.0005 11 6 1.5163 -4.9027 0.2404 12 6 2.6930 -5.2411 1.1736 13 8 2.2971 -5.8745 2.3918 14 6 3.2401 -6.6053 3.0417 15 6 4.5485 -6.6111 2.5905 16 6 5.5112 -7.3513 3.2566 17 6 5.1814 -8.0903 4.3731 18 6 3.8716 -8.0989 4.8439 19 7 3.2720 -8.7357 5.9158 20 1 3.7302 -9.3178 6.5420 21 6 1.9249 -8.4235 5.9665 22 6 0.9070 -8.8028 6.8362 23 6 -0.3743 -8.3320 6.6462 24 6 -0.6630 -7.4788 5.5920 25 6 0.3318 -7.0910 4.7207 26 6 1.6311 -7.5599 4.9008 27 6 2.8950 -7.3500 4.1721 28 6 2.8984 -3.7210 1.3038 29 1 -0.4850 0.8401 -0.0004 30 1 0.6247 -2.5570 -0.8896 31 1 0.6241 -2.5567 0.8904 32 1 1.4577 -5.5405 -0.6415 33 1 0.5618 -4.8000 0.7567 34 1 3.5145 -5.7554 0.6749 35 1 4.8195 -6.0368 1.7170 36 1 6.5299 -7.3499 2.8980 37 1 5.9413 -8.6629 4.8838 38 1 1.1213 -9.4663 7.6611 39 1 -1.1602 -8.6302 7.3242 40 1 -1.6711 -7.1170 5.4533 41 1 0.1046 -6.4260 3.9005 42 1 2.3480 -3.2729 2.1310 43 1 3.9439 -3.4148 1.2715 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226258735.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:28 Heat of formation + Delta-G solvation = 72.866950 kcal Electronic energy + Delta-G solvation = -25884.195548 eV Core-core repulsion = 22281.862533 eV Total energy + Delta-G solvation = -3602.333015 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.60105 -39.96075 -38.26167 -37.11622 -35.40314 -32.88821 -32.04177 -30.34657 -29.36181 -28.78094 -28.38012 -25.77678 -25.20767 -23.86974 -22.78064 -22.12315 -21.26039 -20.88373 -19.34761 -18.43920 -17.58766 -16.84645 -16.54411 -16.15515 -15.56094 -15.26306 -15.04883 -14.76829 -14.55707 -14.37072 -14.27411 -13.98134 -13.64556 -13.40116 -13.12702 -12.66290 -12.22978 -12.10356 -12.03698 -11.94068 -11.82919 -11.45172 -11.29627 -11.20708 -10.94739 -10.81167 -10.66298 -10.28566 -10.14130 -9.75717 -9.63268 -9.19648 -8.74598 -8.51444 -7.94764 -7.89974 -7.50681 -6.06848 -4.09044 0.78141 1.09074 1.77507 1.86309 2.74864 3.30747 3.32250 3.36623 3.40627 3.64815 3.91409 4.40153 4.47966 4.54656 4.66874 4.82555 4.91003 4.91423 5.03871 5.11227 5.13280 5.17894 5.25579 5.29505 5.40178 5.45055 5.61877 5.77413 5.84542 5.95828 6.01528 6.08288 6.16647 6.23486 6.33666 6.36440 6.41731 6.45124 6.50012 6.57235 6.59116 6.76400 6.99379 7.17547 7.34737 7.58424 7.59405 7.83048 8.05392 8.36613 8.97697 9.55552 11.04396 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.014851 B = 0.002997 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.990643 B = 9339.399533 C =10405.690658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.057 3.943 3 Si 0.899 3.101 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.512 4.512 8 H 0.062 0.938 9 C 0.163 3.837 10 N -0.473 5.473 11 C 0.008 3.992 12 C 0.042 3.958 13 O -0.297 6.297 14 C 0.201 3.799 15 C -0.248 4.248 16 C -0.039 4.039 17 C -0.192 4.192 18 C 0.177 3.823 19 N -0.617 5.617 20 H 0.416 0.584 21 C 0.129 3.871 22 C -0.146 4.146 23 C -0.090 4.090 24 C -0.150 4.150 25 C -0.056 4.056 26 C -0.082 4.082 27 C -0.143 4.143 28 C 0.009 3.991 29 H 0.262 0.738 30 H 0.035 0.965 31 H 0.002 0.998 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.137 0.863 36 H 0.130 0.870 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.131 0.869 42 H 0.078 0.922 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.730 -20.607 12.726 24.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.551 4.551 8 H 0.080 0.920 9 C 0.037 3.963 10 N -0.198 5.198 11 C -0.121 4.121 12 C -0.015 4.015 13 O -0.209 6.209 14 C 0.154 3.846 15 C -0.268 4.268 16 C -0.058 4.058 17 C -0.214 4.214 18 C 0.072 3.928 19 N -0.227 5.227 20 H 0.253 0.747 21 C 0.026 3.974 22 C -0.167 4.167 23 C -0.109 4.109 24 C -0.170 4.170 25 C -0.075 4.075 26 C -0.086 4.086 27 C -0.147 4.147 28 C -0.120 4.120 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.020 0.980 32 H 0.106 0.894 33 H 0.092 0.908 34 H 0.122 0.878 35 H 0.155 0.845 36 H 0.148 0.852 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.149 0.851 42 H 0.096 0.904 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.750 -20.373 12.230 24.448 hybrid contribution 0.282 0.720 0.915 1.198 sum 6.032 -19.653 13.145 24.401 Atomic orbital electron populations 1.69955 1.06076 1.26911 1.50644 1.24988 0.94888 0.99403 0.95218 0.86478 0.79720 0.82951 0.78168 1.20558 1.21225 1.19815 1.21070 0.93437 0.89887 1.50662 0.91960 1.20221 0.90840 0.88380 0.96850 1.68594 1.21471 1.02033 1.27677 1.24164 0.96147 0.94795 0.97014 1.25027 0.99757 0.93525 0.83170 1.86205 1.36959 1.61058 1.36665 1.18409 0.88095 0.88436 0.89665 1.21085 0.92163 1.08261 1.05248 1.20604 0.98880 0.93301 0.92988 1.19905 0.92693 1.07697 1.01113 1.17883 0.93177 0.93688 0.88016 1.41604 1.06761 1.46538 1.27748 0.74654 1.18205 0.83829 0.98098 0.97287 1.20019 0.91590 1.04834 1.00276 1.20826 0.95325 0.97035 0.97746 1.20962 0.99382 1.00411 0.96208 1.20725 0.90390 0.97656 0.98716 1.18622 0.93023 1.00794 0.96142 1.17912 0.93144 1.05143 0.98523 1.24225 1.01544 0.92001 0.94254 0.92816 0.94719 0.98024 0.89378 0.90753 0.87790 0.84549 0.85197 0.86016 0.86179 0.85627 0.85608 0.85080 0.90396 0.89840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.51 -14.45 8.84 -34.44 -0.30 -14.76 16 8 H 0.06 1.74 7.80 -52.49 -0.41 1.33 16 9 C 0.16 4.25 4.58 -4.98 -0.02 4.23 16 10 N -0.47 -10.17 6.25 -239.95 -1.50 -11.67 16 11 C 0.01 0.14 7.81 -2.76 -0.02 0.12 16 12 C 0.04 0.67 3.83 -25.80 -0.10 0.57 16 13 O -0.30 -4.89 10.15 -19.29 -0.20 -5.09 16 14 C 0.20 3.05 6.70 -38.98 -0.26 2.78 16 15 C -0.25 -3.20 9.01 -39.42 -0.36 -3.55 16 16 C -0.04 -0.41 10.01 -39.61 -0.40 -0.81 16 17 C -0.19 -2.03 10.06 -39.36 -0.40 -2.43 16 18 C 0.18 2.20 7.21 -83.83 -0.60 1.60 16 19 N -0.62 -6.47 6.13 -8.30 -0.05 -6.52 16 20 H 0.42 2.87 8.96 -40.82 -0.37 2.51 16 21 C 0.13 1.57 7.21 -83.80 -0.60 0.96 16 22 C -0.15 -1.46 10.06 -39.40 -0.40 -1.86 16 23 C -0.09 -0.88 10.01 -39.58 -0.40 -1.28 16 24 C -0.15 -1.69 10.03 -39.58 -0.40 -2.09 16 25 C -0.06 -0.77 10.09 -39.34 -0.40 -1.17 16 26 C -0.08 -1.18 6.35 -105.01 -0.67 -1.85 16 27 C -0.14 -2.12 6.29 -104.88 -0.66 -2.78 16 28 C 0.01 0.17 7.30 -2.76 -0.02 0.15 16 29 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.03 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.00 0.05 7.69 -51.93 -0.40 -0.35 16 32 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.07 1.36 7.79 -51.93 -0.40 0.96 16 34 H 0.10 1.47 6.04 -51.93 -0.31 1.15 16 35 H 0.14 1.64 5.94 -52.49 -0.31 1.33 16 36 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 37 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 39 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 41 H 0.13 1.85 8.05 -52.49 -0.42 1.43 16 42 H 0.08 1.63 7.78 -51.93 -0.40 1.23 16 43 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 LS Contribution 360.61 15.07 5.43 5.43 Total: -1.00 -32.31 360.61 -12.24 -44.55 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -5.55 Total: 3.20 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: -6.10 Total: -20.65 kcal Atomic # 7 Polarization: -43.31 SS G_CDS: -0.81 Total: -44.13 kcal Atomic # 8 Polarization: -4.89 SS G_CDS: -0.20 Total: -5.09 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.31 -12.24 -44.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226258735.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.416 kcal (2) G-P(sol) polarization free energy of solvation -32.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds