Wall clock time and date at job start Tue Mar 31 2020 13:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99918 * 2 1 4 4 H 1.48500 * 109.47121 * 270.00182 * 3 2 1 5 5 H 1.48507 * 109.47081 * 29.99900 * 3 2 1 6 6 H 1.48494 * 109.47120 * 149.99725 * 3 2 1 7 7 C 1.37874 * 120.00250 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00110 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99965 * 0.02562 * 7 2 1 10 10 N 1.46889 * 109.46926 * 179.97438 * 9 7 2 11 11 C 1.47966 * 110.99739 * 169.99921 * 10 9 7 12 12 C 1.53940 * 86.17928 * 222.41786 * 11 10 9 13 13 O 1.42903 * 113.73200 * 138.08198 * 12 11 10 14 14 C 1.35855 * 116.99756 * 157.95868 * 13 12 11 15 15 C 1.38400 * 120.16564 * 6.05197 * 14 13 12 16 16 C 1.38509 * 120.16678 * 179.70558 * 15 14 13 17 17 C 1.37885 * 120.63599 * 0.03573 * 16 15 14 18 18 C 1.39191 * 120.15267 * 359.97438 * 17 16 15 19 19 N 1.38341 * 132.28281 * 179.97438 * 18 17 16 20 20 H 0.96998 * 124.87112 * 359.96407 * 19 18 17 21 21 C 1.38381 * 110.27028 * 179.97438 * 19 18 17 22 22 C 1.39148 * 132.33786 * 179.97438 * 21 19 18 23 23 C 1.37823 * 120.04732 * 180.09494 * 22 21 19 24 24 C 1.38654 * 120.57267 * 359.97438 * 23 22 21 25 25 C 1.37815 * 120.23484 * 359.97438 * 24 23 22 26 26 C 1.39300 * 119.78511 * 0.05503 * 25 24 23 27 27 C 1.39694 * 120.15823 * 185.76939 * 14 13 12 28 28 C 1.47965 * 111.00212 * 70.64049 * 10 9 7 29 29 H 0.97002 * 119.99811 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.46736 * 59.99113 * 9 7 2 31 31 H 1.09005 * 109.46774 * 299.99825 * 9 7 2 32 32 H 1.08999 * 113.76166 * 108.09938 * 11 10 9 33 33 H 1.09002 * 113.75771 * 336.73391 * 11 10 9 34 34 H 1.08999 * 113.73374 * 269.25255 * 12 11 10 35 35 H 1.07998 * 119.91267 * 359.71620 * 15 14 13 36 36 H 1.08005 * 119.68219 * 180.02562 * 16 15 14 37 37 H 1.07996 * 119.91921 * 180.02562 * 17 16 15 38 38 H 1.08005 * 119.97893 * 0.12182 * 22 21 19 39 39 H 1.07998 * 119.71405 * 179.97438 * 23 22 21 40 40 H 1.07999 * 119.88076 * 179.97438 * 24 23 22 41 41 H 1.08001 * 120.10238 * 180.02562 * 25 24 23 42 42 H 1.09000 * 113.75401 * 23.26434 * 28 10 9 43 43 H 1.08994 * 113.76121 * 251.89917 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6156 0.0005 11 6 1.5163 -4.9027 0.2404 12 6 2.6930 -5.2411 1.1736 13 8 2.2971 -5.8745 2.3918 14 6 3.2401 -6.6053 3.0417 15 6 4.5485 -6.6111 2.5905 16 6 5.5112 -7.3513 3.2566 17 6 5.1814 -8.0903 4.3731 18 6 3.8716 -8.0989 4.8439 19 7 3.2720 -8.7357 5.9158 20 1 3.7302 -9.3178 6.5420 21 6 1.9249 -8.4235 5.9665 22 6 0.9070 -8.8028 6.8362 23 6 -0.3743 -8.3320 6.6462 24 6 -0.6630 -7.4788 5.5920 25 6 0.3318 -7.0910 4.7207 26 6 1.6311 -7.5599 4.9008 27 6 2.8950 -7.3500 4.1721 28 6 2.8984 -3.7210 1.3038 29 1 -0.4850 0.8401 -0.0004 30 1 0.6247 -2.5570 -0.8896 31 1 0.6241 -2.5567 0.8904 32 1 1.4577 -5.5405 -0.6415 33 1 0.5618 -4.8000 0.7567 34 1 3.5145 -5.7554 0.6749 35 1 4.8195 -6.0368 1.7170 36 1 6.5299 -7.3499 2.8980 37 1 5.9413 -8.6629 4.8838 38 1 1.1213 -9.4663 7.6611 39 1 -1.1602 -8.6302 7.3242 40 1 -1.6711 -7.1170 5.4533 41 1 0.1046 -6.4260 3.9005 42 1 2.3480 -3.2729 2.1310 43 1 3.9439 -3.4148 1.2715 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226258735.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:27 Heat of formation + Delta-G solvation = 52.166627 kcal Electronic energy + Delta-G solvation = -25885.093181 eV Core-core repulsion = 22281.862533 eV Total energy + Delta-G solvation = -3603.230648 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.51212 -41.31588 -39.42676 -38.21309 -36.34833 -35.01868 -32.97317 -31.42357 -30.97119 -29.77023 -29.34198 -27.47181 -26.88996 -24.91914 -24.12099 -23.01320 -22.69632 -21.88351 -20.80800 -19.51321 -18.64991 -18.43588 -17.75143 -17.39130 -16.95325 -16.49575 -16.37741 -15.90492 -15.73540 -15.62852 -15.54830 -14.87805 -14.79897 -14.71693 -14.32550 -14.10170 -13.78302 -13.70319 -13.46719 -13.11147 -12.85909 -12.85197 -12.59913 -12.53078 -12.29428 -12.20930 -12.14764 -11.77730 -11.54552 -11.40848 -11.20193 -10.67903 -10.60794 -9.75631 -9.68484 -8.87103 -8.41819 -8.26381 -6.37590 -0.13040 0.16371 0.85312 0.97204 1.38700 1.40700 1.51772 1.90409 2.16787 2.37742 2.74910 2.96681 3.06577 3.14817 3.38095 3.59083 3.70149 3.82967 3.96962 4.10552 4.14335 4.25269 4.28752 4.39927 4.40824 4.47191 4.53034 4.57965 4.63417 4.69488 4.73935 4.82791 4.88182 5.02436 5.06294 5.09309 5.32638 5.35029 5.45534 5.49880 5.54935 5.59373 5.65829 5.70683 5.86148 6.02747 6.11173 6.28517 6.47136 6.65138 6.76517 7.32327 8.85645 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.014851 B = 0.002997 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.990643 B = 9339.399533 C =10405.690658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.972 3.028 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.531 4.531 8 H 0.063 0.937 9 C 0.178 3.822 10 N -0.481 5.481 11 C 0.004 3.996 12 C 0.070 3.930 13 O -0.316 6.316 14 C 0.165 3.835 15 C -0.252 4.252 16 C -0.038 4.038 17 C -0.180 4.180 18 C 0.170 3.830 19 N -0.603 5.603 20 H 0.434 0.566 21 C 0.121 3.879 22 C -0.139 4.139 23 C -0.087 4.087 24 C -0.154 4.154 25 C -0.087 4.087 26 C -0.120 4.120 27 C -0.177 4.177 28 C 0.005 3.995 29 H 0.266 0.734 30 H 0.008 0.992 31 H -0.028 1.028 32 H 0.114 0.886 33 H 0.059 0.941 34 H 0.133 0.867 35 H 0.143 0.857 36 H 0.166 0.834 37 H 0.158 0.842 38 H 0.156 0.844 39 H 0.162 0.838 40 H 0.140 0.860 41 H 0.107 0.893 42 H 0.050 0.950 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.150 -22.367 14.425 27.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.796 3.204 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.569 4.569 8 H 0.081 0.919 9 C 0.051 3.949 10 N -0.205 5.205 11 C -0.124 4.124 12 C 0.013 3.987 13 O -0.229 6.229 14 C 0.119 3.881 15 C -0.272 4.272 16 C -0.057 4.057 17 C -0.201 4.201 18 C 0.064 3.936 19 N -0.215 5.215 20 H 0.275 0.725 21 C 0.017 3.983 22 C -0.160 4.160 23 C -0.106 4.106 24 C -0.173 4.173 25 C -0.106 4.106 26 C -0.124 4.124 27 C -0.181 4.181 28 C -0.125 4.125 29 H 0.075 0.925 30 H 0.026 0.974 31 H -0.010 1.010 32 H 0.132 0.868 33 H 0.078 0.922 34 H 0.150 0.850 35 H 0.161 0.839 36 H 0.183 0.817 37 H 0.176 0.824 38 H 0.174 0.826 39 H 0.179 0.821 40 H 0.158 0.842 41 H 0.125 0.875 42 H 0.068 0.932 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.193 -22.175 13.952 27.450 hybrid contribution -0.496 1.141 0.486 1.335 sum 7.697 -21.034 14.438 26.648 Atomic orbital electron populations 1.70086 1.07804 1.28106 1.51315 1.25963 0.95809 1.03423 0.94482 0.85337 0.78507 0.77906 0.78622 1.19542 1.20617 1.18788 1.21391 0.93611 0.91040 1.50829 0.91897 1.19864 0.90923 0.89999 0.94080 1.68477 1.20890 1.01948 1.29191 1.24231 0.96176 0.93364 0.98654 1.24666 0.99160 0.91684 0.83180 1.86170 1.38087 1.61834 1.36795 1.18737 0.88838 0.89834 0.90695 1.21293 0.91653 1.08598 1.05634 1.21036 0.99933 0.92135 0.92573 1.20362 0.92466 1.06747 1.00564 1.18165 0.93565 0.93548 0.88341 1.41516 1.06163 1.46286 1.27502 0.72496 1.18456 0.84926 0.97844 0.97068 1.20472 0.90911 1.04304 1.00286 1.21256 0.96353 0.95718 0.97257 1.21227 0.99432 1.00484 0.96189 1.20727 0.91528 0.98888 0.99458 1.18936 0.93255 1.02461 0.97740 1.18329 0.94399 1.06205 0.99178 1.24211 1.01335 0.94754 0.92151 0.92516 0.97405 1.01032 0.86785 0.92227 0.84978 0.83926 0.81666 0.82421 0.82628 0.82088 0.84232 0.87530 0.93170 0.88534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.32 13.29 21.45 0.28 -57.04 16 2 C 0.00 0.09 5.46 84.65 0.46 0.56 16 3 Si 0.97 44.98 29.54 68.60 2.03 47.01 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 6 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 7 C -0.53 -30.93 8.84 25.60 0.23 -30.71 16 8 H 0.06 3.58 7.80 -2.91 -0.02 3.56 16 9 C 0.18 9.87 4.58 85.56 0.39 10.26 16 10 N -0.48 -21.52 6.25 -916.27 -5.73 -27.25 16 11 C 0.00 0.17 7.81 86.41 0.67 0.84 16 12 C 0.07 2.30 3.83 31.24 0.12 2.42 16 13 O -0.32 -11.10 10.15 -91.92 -0.93 -12.03 16 14 C 0.17 5.14 6.70 22.66 0.15 5.29 16 15 C -0.25 -6.25 9.01 22.37 0.20 -6.04 16 16 C -0.04 -0.71 10.01 22.25 0.22 -0.48 16 17 C -0.18 -3.26 10.06 22.42 0.23 -3.03 16 18 C 0.17 3.99 7.21 38.82 0.28 4.27 16 19 N -0.60 -11.49 6.13 -180.17 -1.10 -12.60 16 20 H 0.43 4.70 8.96 -92.71 -0.83 3.87 16 21 C 0.12 2.82 7.21 38.82 0.28 3.10 16 22 C -0.14 -2.44 10.06 22.39 0.23 -2.22 16 23 C -0.09 -1.53 10.01 22.27 0.22 -1.30 16 24 C -0.15 -3.52 10.03 22.27 0.22 -3.29 16 25 C -0.09 -2.60 10.09 22.43 0.23 -2.37 16 26 C -0.12 -3.62 6.35 -20.11 -0.13 -3.75 16 27 C -0.18 -5.39 6.29 -20.03 -0.13 -5.52 16 28 C 0.00 0.18 7.30 86.40 0.63 0.81 16 29 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 30 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 31 H -0.03 -1.68 7.69 -2.38 -0.02 -1.70 16 32 H 0.11 3.60 8.14 -2.39 -0.02 3.59 16 33 H 0.06 2.39 7.79 -2.39 -0.02 2.37 16 34 H 0.13 3.62 6.04 -2.39 -0.01 3.60 16 35 H 0.14 3.22 5.94 -2.91 -0.02 3.20 16 36 H 0.17 1.87 8.06 -2.91 -0.02 1.84 16 37 H 0.16 1.69 8.06 -2.91 -0.02 1.66 16 38 H 0.16 1.59 8.06 -2.91 -0.02 1.57 16 39 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 40 H 0.14 2.63 8.06 -2.91 -0.02 2.60 16 41 H 0.11 3.51 8.05 -2.91 -0.02 3.48 16 42 H 0.05 2.28 7.78 -2.39 -0.02 2.26 16 43 H 0.10 3.54 8.14 -2.39 -0.02 3.52 16 Total: -1.00 -74.58 360.61 -0.74 -75.32 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: 0.21 Total: 17.76 kcal Atomic # 6 Polarization: -35.68 SS G_CDS: 4.51 Total: -31.17 kcal Atomic # 7 Polarization: -90.34 SS G_CDS: -6.55 Total: -96.89 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: -0.93 Total: -12.03 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -74.58 -0.74 -75.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226258735.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.484 kcal (2) G-P(sol) polarization free energy of solvation -74.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds