Wall clock time and date at job start Tue Mar 31 2020 13:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46899 * 109.46841 * 2 1 4 4 C 1.46905 * 109.47096 * 240.00003 * 2 1 3 5 5 C 1.46897 * 109.47175 * 119.99630 * 2 1 3 6 6 C 1.53002 * 109.46759 * 62.26689 * 5 2 1 7 7 H 1.08994 * 109.47627 * 53.06862 * 6 5 2 8 8 C 1.50706 * 109.46947 * 173.06630 * 6 5 2 9 9 H 1.07997 * 120.00263 * 245.59874 * 8 6 5 10 10 C 1.37876 * 119.99862 * 65.60553 * 8 6 5 11 11 N 1.31510 * 119.99952 * 200.08909 * 10 8 6 12 12 Si 1.86801 * 119.99998 * 20.08449 * 10 8 6 13 13 H 1.48503 * 109.46919 * 180.02562 * 12 10 8 14 14 H 1.48506 * 109.47226 * 299.99975 * 12 10 8 15 15 H 1.48500 * 109.47317 * 59.99986 * 12 10 8 16 16 O 1.42900 * 109.47115 * 293.06625 * 6 5 2 17 17 C 1.35959 * 116.99847 * 156.77012 * 16 6 5 18 18 C 1.37681 * 119.82659 * 359.59339 * 17 16 6 19 19 C 1.38669 * 120.53080 * 179.97438 * 18 17 16 20 20 C 1.37716 * 120.01332 * 0.02562 * 19 18 17 21 21 C 1.39374 * 120.29882 * 359.97438 * 20 19 18 22 22 S 1.76206 * 131.13438 * 180.02562 * 21 20 19 23 23 C 1.75805 * 90.45593 * 179.97438 * 22 21 20 24 24 N 1.38096 * 124.81942 * 179.97438 * 23 22 21 25 25 N 1.28830 * 110.35662 * 359.97438 * 23 22 21 26 26 C 1.34918 * 117.86355 * 359.74769 * 25 23 22 27 27 H 1.08995 * 109.46878 * 287.33097 * 1 2 3 28 28 H 1.08996 * 109.46889 * 47.33413 * 1 2 3 29 29 H 1.08999 * 109.46857 * 167.32829 * 1 2 3 30 30 H 1.09003 * 109.47088 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.47178 * 300.00056 * 3 2 1 32 32 H 1.09001 * 109.47550 * 59.99761 * 3 2 1 33 33 H 1.08997 * 109.46833 * 299.99902 * 4 2 1 34 34 H 1.08995 * 109.47057 * 59.99896 * 4 2 1 35 35 H 1.08996 * 109.46627 * 179.97438 * 4 2 1 36 36 H 1.08995 * 109.47085 * 302.26665 * 5 2 1 37 37 H 1.09004 * 109.47138 * 182.26337 * 5 2 1 38 38 H 0.96998 * 120.00007 * 354.94169 * 11 10 8 39 39 H 1.08003 * 119.73408 * 0.02638 * 18 17 16 40 40 H 1.08008 * 119.99065 * 179.97438 * 19 18 17 41 41 H 1.07998 * 119.84745 * 179.97438 * 20 19 18 42 42 H 0.97005 * 120.00272 * 359.97438 * 24 23 22 43 43 H 0.96999 * 120.00166 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9586 1.3850 0.0000 4 6 1.9587 -0.6925 -1.1995 5 6 1.9587 -0.6924 1.1994 6 6 1.4958 -2.1504 1.1713 7 1 1.7870 -2.6059 0.2248 8 6 2.1365 -2.9030 2.3090 9 1 2.8422 -3.6942 2.1035 10 6 1.8215 -2.5813 3.6122 11 7 2.6302 -2.9293 4.5892 12 14 0.2463 -1.6512 3.9901 13 1 0.1416 -1.4296 5.4548 14 1 0.2655 -0.3407 3.2918 15 1 -0.9202 -2.4433 3.5242 16 8 0.0742 -2.2015 1.3070 17 6 -0.5518 -3.3109 0.8316 18 6 0.1855 -4.3145 0.2443 19 6 -0.4378 -5.4524 -0.2451 20 6 -1.8049 -5.5854 -0.1464 21 6 -2.5684 -4.5803 0.4447 22 16 -4.3044 -4.4524 0.7181 23 6 -4.0839 -2.8799 1.4728 24 7 -5.1031 -2.1002 1.9828 25 7 -2.8364 -2.5584 1.4823 26 6 -1.9563 -3.4308 0.9489 27 1 -0.3633 0.3061 0.9810 28 1 -0.3633 0.6965 -0.7556 29 1 -0.3633 -1.0026 -0.2254 30 1 3.0487 1.3851 -0.0005 31 1 1.5953 1.8989 -0.8900 32 1 1.5953 1.8989 0.8899 33 1 1.5954 -1.7201 -1.1994 34 1 1.5954 -0.1787 -2.0894 35 1 3.0487 -0.6921 -1.1996 36 1 1.5626 -0.2025 2.0889 37 1 3.0480 -0.6574 1.2200 38 1 3.4100 -3.4751 4.4022 39 1 1.2580 -4.2150 0.1650 40 1 0.1490 -6.2341 -0.7045 41 1 -2.2877 -6.4726 -0.5288 42 1 -6.0208 -2.4115 1.9382 43 1 -4.9015 -1.2412 2.3857 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228232065.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:07 Heat of formation + Delta-G solvation = 139.371653 kcal Electronic energy + Delta-G solvation = -26758.837210 eV Core-core repulsion = 23243.061835 eV Total energy + Delta-G solvation = -3515.775375 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.133 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.58928 -41.26406 -39.38351 -37.57126 -34.86014 -34.62596 -32.35016 -30.81993 -30.53651 -30.31542 -29.51508 -27.76321 -25.19991 -24.75607 -23.60654 -22.79612 -21.76129 -20.33737 -19.31480 -18.97700 -18.68302 -18.49563 -18.04145 -17.74622 -16.95540 -16.51874 -16.36922 -15.81027 -15.49169 -15.38336 -15.14380 -15.10358 -14.75830 -14.44153 -14.30251 -14.22450 -14.09362 -14.03892 -13.77462 -13.60985 -13.31446 -13.16703 -12.79202 -12.27506 -12.10245 -11.84989 -11.70123 -11.07921 -10.86037 -10.61707 -10.42141 -10.29106 -9.82597 -8.86119 -8.32734 -8.04659 -5.95246 -0.12764 0.11819 0.15898 0.44659 0.76332 1.69343 1.86363 2.05753 2.15589 2.17067 2.27006 2.36445 2.53794 2.72714 2.96176 3.02246 3.06474 3.08890 3.27468 3.37853 3.48726 3.51453 3.59925 3.62399 3.69973 3.71725 3.85334 3.99659 4.00360 4.11751 4.20480 4.37325 4.52255 4.59192 4.68583 4.76266 5.27275 5.43250 5.63637 5.77453 5.84245 5.91527 6.17791 6.56853 6.76019 7.09674 7.21819 7.89389 9.29553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.275 5.275 3 C -0.043 4.043 4 C -0.046 4.046 5 C -0.009 4.009 6 C 0.161 3.839 7 H 0.062 0.938 8 C -0.641 4.641 9 H 0.078 0.922 10 C 0.048 3.952 11 N -0.845 5.845 12 Si 1.069 2.931 13 H -0.297 1.297 14 H -0.295 1.295 15 H -0.258 1.258 16 O -0.323 6.323 17 C 0.187 3.813 18 C -0.183 4.183 19 C -0.078 4.078 20 C -0.106 4.106 21 C -0.155 4.155 22 S 0.037 5.963 23 C 0.368 3.632 24 N -0.816 5.816 25 N -0.526 5.526 26 C 0.097 3.903 27 H 0.120 0.880 28 H 0.104 0.896 29 H 0.129 0.871 30 H 0.116 0.884 31 H 0.113 0.887 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.113 0.887 35 H 0.118 0.882 36 H 0.131 0.869 37 H 0.137 0.863 38 H 0.282 0.718 39 H 0.143 0.857 40 H 0.133 0.867 41 H 0.126 0.874 42 H 0.416 0.584 43 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.878 11.033 -15.646 19.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 N 0.066 4.934 3 C -0.185 4.185 4 C -0.187 4.187 5 C -0.127 4.127 6 C 0.106 3.894 7 H 0.080 0.920 8 C -0.677 4.677 9 H 0.096 0.904 10 C -0.167 4.167 11 N -0.472 5.472 12 Si 0.899 3.101 13 H -0.225 1.225 14 H -0.224 1.224 15 H -0.183 1.183 16 O -0.239 6.239 17 C 0.138 3.862 18 C -0.205 4.205 19 C -0.099 4.099 20 C -0.130 4.130 21 C -0.274 4.274 22 S 0.284 5.716 23 C -0.012 4.012 24 N -0.369 5.369 25 N -0.251 5.251 26 C -0.022 4.022 27 H 0.138 0.862 28 H 0.122 0.878 29 H 0.147 0.853 30 H 0.135 0.865 31 H 0.131 0.869 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.131 0.869 35 H 0.136 0.864 36 H 0.149 0.851 37 H 0.155 0.845 38 H 0.093 0.907 39 H 0.161 0.839 40 H 0.151 0.849 41 H 0.144 0.856 42 H 0.247 0.753 43 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -4.491 11.778 -14.259 19.032 hybrid contribution 1.602 -0.621 -0.839 1.912 sum -2.889 11.157 -15.098 18.994 Atomic orbital electron populations 1.24305 0.76071 1.09417 1.08379 1.46494 1.15774 1.14666 1.16420 1.24062 1.05158 0.80919 1.08350 1.24096 1.05135 1.02507 0.87012 1.25388 1.04503 0.96495 0.86319 1.20796 0.77843 0.89742 1.01005 0.92017 1.21984 1.31064 1.23754 0.90899 0.90368 1.26114 1.00989 0.97334 0.92265 1.70888 1.11852 1.28531 1.35969 0.83616 0.76091 0.75003 0.75368 1.22477 1.22355 1.18314 1.86060 1.24421 1.37790 1.75602 1.18007 0.87272 0.87988 0.92962 1.21030 1.00732 0.94575 1.04170 1.20832 0.93365 0.97200 0.98518 1.20141 0.93408 0.97597 1.01848 1.23041 0.95147 1.00354 1.08895 1.84996 1.03995 1.18758 1.63806 1.23592 0.89620 0.92216 0.95747 1.41464 1.06069 1.22725 1.66637 1.66178 0.98982 1.33374 1.26522 1.17885 0.91744 0.90427 1.02161 0.86183 0.87789 0.85259 0.86528 0.86886 0.86541 0.86225 0.86877 0.86390 0.85122 0.84495 0.90668 0.83932 0.84914 0.85557 0.75250 0.75423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.35 7.02 60.07 0.42 0.77 16 2 N -0.27 2.77 0.05 -395.62 -0.02 2.76 16 3 C -0.04 0.56 7.99 60.06 0.48 1.04 16 4 C -0.05 0.54 7.59 60.07 0.46 1.00 16 5 C -0.01 0.04 3.49 -3.82 -0.01 0.03 16 6 C 0.16 0.07 1.38 -27.88 -0.04 0.03 16 7 H 0.06 -0.14 3.84 -51.93 -0.20 -0.34 16 8 C -0.64 -4.92 8.55 -34.44 -0.29 -5.22 16 9 H 0.08 0.82 8.06 -52.49 -0.42 0.39 16 10 C 0.05 0.54 5.32 -17.82 -0.09 0.44 16 11 N -0.84 -12.48 13.70 55.43 0.76 -11.72 16 12 Si 1.07 9.53 24.88 -169.99 -4.23 5.30 16 13 H -0.30 -3.56 7.11 56.52 0.40 -3.16 16 14 H -0.29 -1.27 5.60 56.52 0.32 -0.96 16 15 H -0.26 -2.61 6.83 56.52 0.39 -2.22 16 16 O -0.32 -0.66 3.00 -19.61 -0.06 -0.72 16 17 C 0.19 0.64 6.01 -38.56 -0.23 0.41 16 18 C -0.18 -0.42 8.72 -39.63 -0.35 -0.76 16 19 C -0.08 -0.12 10.04 -39.61 -0.40 -0.52 16 20 C -0.11 -0.25 10.06 -39.35 -0.40 -0.65 16 21 C -0.15 -0.58 6.52 -38.63 -0.25 -0.83 16 22 S 0.04 0.08 23.39 -107.50 -2.51 -2.44 16 23 C 0.37 0.83 8.74 -88.87 -0.78 0.05 16 24 N -0.82 1.23 9.05 30.48 0.28 1.50 16 25 N -0.53 -2.30 10.62 -11.07 -0.12 -2.42 16 26 C 0.10 0.45 6.88 -84.76 -0.58 -0.13 16 27 H 0.12 -0.79 7.88 -51.93 -0.41 -1.20 16 28 H 0.10 -1.21 7.94 -51.93 -0.41 -1.62 16 29 H 0.13 -0.78 5.43 -51.93 -0.28 -1.06 16 30 H 0.12 -1.60 8.14 -51.93 -0.42 -2.02 16 31 H 0.11 -1.67 8.05 -51.93 -0.42 -2.09 16 32 H 0.12 -1.44 8.14 -51.93 -0.42 -1.86 16 33 H 0.12 -1.20 5.86 -51.93 -0.30 -1.51 16 34 H 0.11 -1.58 8.14 -51.93 -0.42 -2.01 16 35 H 0.12 -1.51 8.14 -51.93 -0.42 -1.93 16 36 H 0.13 -0.31 4.90 -51.93 -0.25 -0.56 16 37 H 0.14 -0.78 8.12 -51.93 -0.42 -1.20 16 38 H 0.28 4.13 8.73 -40.82 -0.36 3.78 16 39 H 0.14 0.18 5.62 -52.48 -0.29 -0.12 16 40 H 0.13 -0.10 8.06 -52.48 -0.42 -0.53 16 41 H 0.13 0.07 8.06 -52.49 -0.42 -0.35 16 42 H 0.42 -1.67 8.95 -40.82 -0.37 -2.03 16 43 H 0.41 -1.09 8.95 -40.82 -0.37 -1.45 16 LS Contribution 343.52 15.07 5.18 5.18 Total: 0.00 -22.22 343.52 -8.73 -30.96 By element: Atomic # 1 Polarization: -18.11 SS G_CDS: -5.94 Total: -24.05 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -2.07 Total: -4.35 kcal Atomic # 7 Polarization: -10.78 SS G_CDS: 0.90 Total: -9.88 kcal Atomic # 8 Polarization: -0.66 SS G_CDS: -0.06 Total: -0.72 kcal Atomic # 14 Polarization: 9.53 SS G_CDS: -4.23 Total: 5.30 kcal Atomic # 16 Polarization: 0.08 SS G_CDS: -2.51 Total: -2.44 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -22.22 -8.73 -30.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228232065.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.328 kcal (2) G-P(sol) polarization free energy of solvation -22.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds