Wall clock time and date at job start Tue Mar 31 2020 13:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46899 * 109.46841 * 2 1 4 4 C 1.46905 * 109.47096 * 240.00003 * 2 1 3 5 5 C 1.46897 * 109.47175 * 119.99630 * 2 1 3 6 6 C 1.53002 * 109.46759 * 62.26689 * 5 2 1 7 7 H 1.08994 * 109.47627 * 53.06862 * 6 5 2 8 8 C 1.50706 * 109.46947 * 173.06630 * 6 5 2 9 9 H 1.07997 * 120.00263 * 245.59874 * 8 6 5 10 10 C 1.37876 * 119.99862 * 65.60553 * 8 6 5 11 11 N 1.31510 * 119.99952 * 200.08909 * 10 8 6 12 12 Si 1.86801 * 119.99998 * 20.08449 * 10 8 6 13 13 H 1.48503 * 109.46919 * 180.02562 * 12 10 8 14 14 H 1.48506 * 109.47226 * 299.99975 * 12 10 8 15 15 H 1.48500 * 109.47317 * 59.99986 * 12 10 8 16 16 O 1.42900 * 109.47115 * 293.06625 * 6 5 2 17 17 C 1.35959 * 116.99847 * 156.77012 * 16 6 5 18 18 C 1.37681 * 119.82659 * 359.59339 * 17 16 6 19 19 C 1.38669 * 120.53080 * 179.97438 * 18 17 16 20 20 C 1.37716 * 120.01332 * 0.02562 * 19 18 17 21 21 C 1.39374 * 120.29882 * 359.97438 * 20 19 18 22 22 S 1.76206 * 131.13438 * 180.02562 * 21 20 19 23 23 C 1.75805 * 90.45593 * 179.97438 * 22 21 20 24 24 N 1.38096 * 124.81942 * 179.97438 * 23 22 21 25 25 N 1.28830 * 110.35662 * 359.97438 * 23 22 21 26 26 C 1.34918 * 117.86355 * 359.74769 * 25 23 22 27 27 H 1.08995 * 109.46878 * 287.33097 * 1 2 3 28 28 H 1.08996 * 109.46889 * 47.33413 * 1 2 3 29 29 H 1.08999 * 109.46857 * 167.32829 * 1 2 3 30 30 H 1.09003 * 109.47088 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.47178 * 300.00056 * 3 2 1 32 32 H 1.09001 * 109.47550 * 59.99761 * 3 2 1 33 33 H 1.08997 * 109.46833 * 299.99902 * 4 2 1 34 34 H 1.08995 * 109.47057 * 59.99896 * 4 2 1 35 35 H 1.08996 * 109.46627 * 179.97438 * 4 2 1 36 36 H 1.08995 * 109.47085 * 302.26665 * 5 2 1 37 37 H 1.09004 * 109.47138 * 182.26337 * 5 2 1 38 38 H 0.96998 * 120.00007 * 354.94169 * 11 10 8 39 39 H 1.08003 * 119.73408 * 0.02638 * 18 17 16 40 40 H 1.08008 * 119.99065 * 179.97438 * 19 18 17 41 41 H 1.07998 * 119.84745 * 179.97438 * 20 19 18 42 42 H 0.97005 * 120.00272 * 359.97438 * 24 23 22 43 43 H 0.96999 * 120.00166 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9586 1.3850 0.0000 4 6 1.9587 -0.6925 -1.1995 5 6 1.9587 -0.6924 1.1994 6 6 1.4958 -2.1504 1.1713 7 1 1.7870 -2.6059 0.2248 8 6 2.1365 -2.9030 2.3090 9 1 2.8422 -3.6942 2.1035 10 6 1.8215 -2.5813 3.6122 11 7 2.6302 -2.9293 4.5892 12 14 0.2463 -1.6512 3.9901 13 1 0.1416 -1.4296 5.4548 14 1 0.2655 -0.3407 3.2918 15 1 -0.9202 -2.4433 3.5242 16 8 0.0742 -2.2015 1.3070 17 6 -0.5518 -3.3109 0.8316 18 6 0.1855 -4.3145 0.2443 19 6 -0.4378 -5.4524 -0.2451 20 6 -1.8049 -5.5854 -0.1464 21 6 -2.5684 -4.5803 0.4447 22 16 -4.3044 -4.4524 0.7181 23 6 -4.0839 -2.8799 1.4728 24 7 -5.1031 -2.1002 1.9828 25 7 -2.8364 -2.5584 1.4823 26 6 -1.9563 -3.4308 0.9489 27 1 -0.3633 0.3061 0.9810 28 1 -0.3633 0.6965 -0.7556 29 1 -0.3633 -1.0026 -0.2254 30 1 3.0487 1.3851 -0.0005 31 1 1.5953 1.8989 -0.8900 32 1 1.5953 1.8989 0.8899 33 1 1.5954 -1.7201 -1.1994 34 1 1.5954 -0.1787 -2.0894 35 1 3.0487 -0.6921 -1.1996 36 1 1.5626 -0.2025 2.0889 37 1 3.0480 -0.6574 1.2200 38 1 3.4100 -3.4751 4.4022 39 1 1.2580 -4.2150 0.1650 40 1 0.1490 -6.2341 -0.7045 41 1 -2.2877 -6.4726 -0.5288 42 1 -6.0208 -2.4115 1.9382 43 1 -4.9015 -1.2412 2.3857 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228232065.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:07 Heat of formation + Delta-G solvation = 127.486434 kcal Electronic energy + Delta-G solvation = -26759.352592 eV Core-core repulsion = 23243.061835 eV Total energy + Delta-G solvation = -3516.290757 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.133 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.00399 -41.35646 -39.49088 -37.69132 -35.24944 -34.89273 -32.46902 -30.87521 -29.69969 -29.63832 -29.47733 -27.75087 -25.41269 -24.52748 -23.56749 -22.92679 -21.89052 -20.57800 -19.65058 -18.67658 -18.30424 -17.95867 -17.80308 -17.64451 -17.01008 -16.53392 -16.49572 -15.91358 -15.74155 -15.52864 -15.23166 -14.76684 -14.53203 -14.38772 -14.02509 -13.66891 -13.61215 -13.43348 -13.27983 -13.20585 -13.13033 -13.08666 -12.88972 -12.64895 -12.28598 -12.25347 -12.01356 -11.40823 -11.19714 -11.11233 -10.72610 -10.59383 -10.43553 -8.99360 -8.92410 -8.44421 -6.72832 -0.29560 0.02850 0.24601 0.58444 0.86253 1.21191 1.52740 1.55320 1.79273 2.23160 2.32610 2.42111 2.71804 2.77512 2.92647 2.97733 3.18636 3.59825 3.72673 3.86836 4.01726 4.06542 4.13469 4.18840 4.24714 4.27335 4.40133 4.41233 4.44271 4.50723 4.54919 4.63419 4.69183 4.77432 4.81320 4.85895 5.13385 5.29408 5.40107 5.46971 5.64374 5.86852 5.95866 6.11815 6.31628 6.59133 7.03179 7.18780 8.45814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.260 5.260 3 C -0.047 4.047 4 C -0.053 4.053 5 C 0.007 3.993 6 C 0.159 3.841 7 H 0.093 0.907 8 C -0.622 4.622 9 H 0.043 0.957 10 C 0.010 3.990 11 N -0.918 5.918 12 Si 1.092 2.908 13 H -0.346 1.346 14 H -0.224 1.224 15 H -0.276 1.276 16 O -0.316 6.316 17 C 0.170 3.830 18 C -0.187 4.187 19 C -0.080 4.080 20 C -0.112 4.112 21 C -0.178 4.178 22 S 0.053 5.947 23 C 0.363 3.637 24 N -0.799 5.799 25 N -0.552 5.552 26 C 0.077 3.923 27 H 0.100 0.900 28 H 0.144 0.856 29 H 0.103 0.897 30 H 0.130 0.870 31 H 0.145 0.855 32 H 0.112 0.888 33 H 0.100 0.900 34 H 0.147 0.853 35 H 0.134 0.866 36 H 0.113 0.887 37 H 0.155 0.845 38 H 0.265 0.735 39 H 0.149 0.851 40 H 0.157 0.843 41 H 0.143 0.857 42 H 0.429 0.571 43 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.626 13.304 -19.127 23.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 N 0.082 4.918 3 C -0.187 4.187 4 C -0.194 4.194 5 C -0.114 4.114 6 C 0.104 3.896 7 H 0.110 0.890 8 C -0.660 4.660 9 H 0.061 0.939 10 C -0.195 4.195 11 N -0.551 5.551 12 Si 0.922 3.078 13 H -0.278 1.278 14 H -0.148 1.148 15 H -0.202 1.202 16 O -0.231 6.231 17 C 0.121 3.879 18 C -0.209 4.209 19 C -0.101 4.101 20 C -0.136 4.136 21 C -0.298 4.298 22 S 0.300 5.700 23 C -0.017 4.017 24 N -0.353 5.353 25 N -0.278 5.278 26 C -0.042 4.042 27 H 0.119 0.881 28 H 0.162 0.838 29 H 0.122 0.878 30 H 0.148 0.852 31 H 0.163 0.837 32 H 0.131 0.869 33 H 0.118 0.882 34 H 0.165 0.835 35 H 0.152 0.848 36 H 0.131 0.869 37 H 0.173 0.827 38 H 0.075 0.925 39 H 0.167 0.833 40 H 0.175 0.825 41 H 0.160 0.840 42 H 0.262 0.738 43 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -5.283 14.104 -17.809 23.323 hybrid contribution 1.707 -1.390 0.049 2.202 sum -3.576 12.714 -17.759 22.132 Atomic orbital electron populations 1.24284 0.76645 1.08901 1.08625 1.46049 1.15141 1.16033 1.14598 1.24322 1.06148 0.78420 1.09811 1.24334 1.06270 1.01719 0.87061 1.24508 1.05218 0.93465 0.88202 1.20850 0.76478 0.92797 0.99498 0.89004 1.22126 1.28943 1.22609 0.92292 0.93896 1.26803 1.01654 0.97797 0.93235 1.70996 1.13488 1.33026 1.37620 0.83377 0.73683 0.78012 0.72766 1.27765 1.14798 1.20211 1.86023 1.24207 1.37111 1.75807 1.18192 0.87412 0.88601 0.93663 1.21194 1.00991 0.94714 1.03985 1.21143 0.93445 0.97434 0.98063 1.20433 0.93789 0.97844 1.01510 1.23356 0.96251 1.00703 1.09482 1.84810 1.02900 1.18551 1.63722 1.23874 0.89838 0.92615 0.95372 1.41516 1.06002 1.22501 1.65320 1.66181 0.99685 1.34043 1.27894 1.18143 0.92341 0.91003 1.02677 0.88086 0.83767 0.87804 0.85157 0.83696 0.86909 0.88182 0.83497 0.84775 0.86865 0.82749 0.92500 0.83345 0.82532 0.83951 0.73765 0.74600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 0.84 7.02 127.69 0.90 1.73 16 2 N -0.26 5.99 0.05 ******* -0.07 5.92 16 3 C -0.05 1.39 7.99 127.69 1.02 2.41 16 4 C -0.05 1.43 7.59 127.69 0.97 2.39 16 5 C 0.01 -0.07 3.49 86.30 0.30 0.23 16 6 C 0.16 0.15 1.38 29.85 0.04 0.19 16 7 H 0.09 -0.46 3.84 -2.39 -0.01 -0.47 16 8 C -0.62 -10.98 8.55 25.60 0.22 -10.76 16 9 H 0.04 1.04 8.06 -2.91 -0.02 1.02 16 10 C 0.01 0.27 5.32 84.66 0.45 0.72 16 11 N -0.92 -31.71 13.70 21.45 0.29 -31.41 16 12 Si 1.09 21.69 24.88 68.60 1.71 23.40 16 13 H -0.35 -9.74 7.11 99.48 0.71 -9.04 16 14 H -0.22 -1.67 5.60 99.48 0.56 -1.11 16 15 H -0.28 -6.21 6.83 99.48 0.68 -5.53 16 16 O -0.32 -1.40 3.00 -93.08 -0.28 -1.68 16 17 C 0.17 1.31 6.01 22.93 0.14 1.45 16 18 C -0.19 -0.95 8.72 22.24 0.19 -0.76 16 19 C -0.08 -0.25 10.04 22.25 0.22 -0.03 16 20 C -0.11 -0.54 10.06 22.42 0.23 -0.32 16 21 C -0.18 -1.45 6.52 22.88 0.15 -1.30 16 22 S 0.05 0.22 23.39 -56.49 -1.32 -1.10 16 23 C 0.36 1.70 8.74 179.74 1.57 3.27 16 24 N -0.80 2.75 9.05 -57.50 -0.52 2.23 16 25 N -0.55 -5.19 10.62 -188.95 -2.01 -7.20 16 26 C 0.08 0.79 6.88 39.80 0.27 1.06 16 27 H 0.10 -1.49 7.88 -2.39 -0.02 -1.51 16 28 H 0.14 -3.92 7.94 -2.39 -0.02 -3.94 16 29 H 0.10 -1.36 5.43 -2.39 -0.01 -1.37 16 30 H 0.13 -4.10 8.14 -2.39 -0.02 -4.12 16 31 H 0.14 -5.06 8.05 -2.38 -0.02 -5.08 16 32 H 0.11 -3.13 8.14 -2.39 -0.02 -3.15 16 33 H 0.10 -2.21 5.86 -2.39 -0.01 -2.22 16 34 H 0.15 -4.80 8.14 -2.39 -0.02 -4.82 16 35 H 0.13 -3.93 8.14 -2.39 -0.02 -3.95 16 36 H 0.11 -0.68 4.90 -2.39 -0.01 -0.69 16 37 H 0.15 -2.04 8.12 -2.39 -0.02 -2.06 16 38 H 0.26 9.30 8.73 -92.71 -0.81 8.49 16 39 H 0.15 0.43 5.62 -2.91 -0.02 0.42 16 40 H 0.16 -0.37 8.06 -2.91 -0.02 -0.40 16 41 H 0.14 0.10 8.06 -2.91 -0.02 0.08 16 42 H 0.43 -3.77 8.95 -92.70 -0.83 -4.60 16 43 H 0.42 -2.43 8.95 -92.71 -0.83 -3.26 16 Total: 0.00 -60.53 343.52 3.66 -56.87 By element: Atomic # 1 Polarization: -46.49 SS G_CDS: -0.81 Total: -47.31 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: 6.67 Total: 0.29 kcal Atomic # 7 Polarization: -28.16 SS G_CDS: -2.30 Total: -30.46 kcal Atomic # 8 Polarization: -1.40 SS G_CDS: -0.28 Total: -1.68 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: 1.71 Total: 23.40 kcal Atomic # 16 Polarization: 0.22 SS G_CDS: -1.32 Total: -1.10 kcal Total: -60.53 3.66 -56.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228232065.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.357 kcal (2) G-P(sol) polarization free energy of solvation -60.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds