Wall clock time and date at job start Tue Mar 31 2020 13:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86793 * 120.00067 * 2 1 4 4 H 1.48499 * 109.47243 * 270.00116 * 3 2 1 5 5 H 1.48504 * 109.47490 * 29.99806 * 3 2 1 6 6 H 1.48499 * 109.47273 * 149.99956 * 3 2 1 7 7 C 1.37873 * 119.99505 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99484 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00535 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47449 * 179.97438 * 9 7 2 11 11 C 1.47960 * 111.00290 * 169.99957 * 10 9 7 12 12 C 1.53940 * 86.18028 * 222.41814 * 11 10 9 13 13 O 1.42899 * 113.73078 * 138.07768 * 12 11 10 14 14 C 1.35895 * 116.99880 * 158.09317 * 13 12 11 15 15 C 1.39152 * 119.77419 * 185.98421 * 14 13 12 16 16 C 1.37699 * 120.17895 * 180.02562 * 15 14 13 17 17 C 1.39334 * 119.85941 * 0.03225 * 16 15 14 18 18 C 1.40295 * 120.15828 * 359.96626 * 17 16 15 19 19 C 1.38295 * 119.77325 * 6.01081 * 14 13 12 20 20 N 1.38365 * 108.37749 * 179.45370 * 18 17 16 21 21 H 0.97008 * 124.86149 * 179.97438 * 20 18 17 22 22 C 1.38394 * 110.27387 * 0.63286 * 20 18 17 23 23 C 1.39147 * 132.33133 * 179.23017 * 22 20 18 24 24 C 1.37830 * 120.04451 * 180.02562 * 23 22 20 25 25 C 1.38645 * 120.57996 * 0.02562 * 24 23 22 26 26 C 1.37830 * 120.22948 * 0.02562 * 25 24 23 27 27 C 1.39289 * 119.77092 * 0.27373 * 26 25 24 28 28 C 1.47960 * 110.99882 * 70.63805 * 10 9 7 29 29 H 0.97003 * 120.00092 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47236 * 59.99610 * 9 7 2 31 31 H 1.08999 * 109.46933 * 299.99984 * 9 7 2 32 32 H 1.09002 * 113.75920 * 108.09801 * 11 10 9 33 33 H 1.09003 * 113.75564 * 336.73378 * 11 10 9 34 34 H 1.08996 * 113.73355 * 269.25672 * 12 11 10 35 35 H 1.08001 * 119.90635 * 0.04407 * 15 14 13 36 36 H 1.08005 * 120.06898 * 180.02562 * 16 15 14 37 37 H 1.07995 * 119.99961 * 359.95285 * 19 14 13 38 38 H 1.08000 * 119.98003 * 0.04800 * 23 22 20 39 39 H 1.08005 * 119.71797 * 180.02562 * 24 23 22 40 40 H 1.08003 * 119.88929 * 180.02562 * 25 24 23 41 41 H 1.08000 * 120.11548 * 180.02562 * 26 25 24 42 42 H 1.09003 * 113.75972 * 23.27189 * 28 10 9 43 43 H 1.08996 * 113.76216 * 251.90461 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2055 -3.6157 0.0005 11 6 1.5161 -4.9027 0.2404 12 6 2.6928 -5.2412 1.1735 13 8 2.2968 -5.8745 2.3918 14 6 3.2408 -6.6033 3.0433 15 6 2.8875 -7.3457 4.1661 16 6 3.8374 -8.0867 4.8329 17 6 5.1557 -8.0920 4.3818 18 6 5.5164 -7.3451 3.2503 19 6 4.5461 -6.6017 2.5864 20 7 6.8717 -7.5149 3.0294 21 1 7.3714 -7.1042 2.3064 22 6 7.4094 -8.3662 3.9788 23 6 8.6971 -8.8543 4.1778 24 6 8.9569 -9.7083 5.2280 25 6 7.9436 -10.0899 6.0940 26 6 6.6614 -9.6179 5.9127 27 6 6.3841 -8.7591 4.8516 28 6 2.8982 -3.7212 1.3037 29 1 -0.4850 0.8401 0.0004 30 1 0.6246 -2.5571 -0.8897 31 1 0.6240 -2.5566 0.8903 32 1 1.4575 -5.5406 -0.6416 33 1 0.5617 -4.8001 0.7567 34 1 3.5143 -5.7554 0.6748 35 1 1.8655 -7.3408 4.5151 36 1 3.5612 -8.6625 5.7039 37 1 4.8121 -6.0233 1.7141 38 1 9.4938 -8.5634 3.5091 39 1 9.9585 -10.0836 5.3777 40 1 8.1597 -10.7593 6.9135 41 1 5.8736 -9.9160 6.5886 42 1 2.3479 -3.2730 2.1311 43 1 3.9437 -3.4150 1.2715 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228486005.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:42 Heat of formation + Delta-G solvation = 71.701141 kcal Electronic energy + Delta-G solvation = -25243.073241 eV Core-core repulsion = 21640.689673 eV Total energy + Delta-G solvation = -3602.383568 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.64486 -40.10080 -38.39255 -37.11032 -35.40023 -32.89954 -31.94314 -30.89783 -29.47879 -28.86056 -28.22560 -25.83970 -25.28420 -23.99038 -22.57021 -22.11719 -21.80914 -20.69392 -19.37740 -18.48601 -17.82125 -17.02056 -16.60436 -16.23578 -15.56469 -15.22707 -14.95728 -14.73217 -14.67306 -14.46860 -14.33504 -14.11895 -13.82375 -13.62216 -13.22155 -12.62668 -12.37463 -12.24542 -12.12237 -11.94446 -11.88913 -11.60849 -11.34393 -11.18107 -11.03463 -10.91693 -10.69778 -10.32434 -10.25984 -9.76977 -9.38989 -9.23142 -9.21235 -8.54420 -7.94708 -7.80225 -7.72595 -6.09646 -4.12040 0.67833 0.94900 1.67070 1.81060 2.72204 3.28319 3.29294 3.34318 3.38077 3.54591 3.82095 4.37352 4.38230 4.43191 4.63123 4.71585 4.77388 4.77883 4.92264 5.04463 5.07201 5.10854 5.19091 5.26482 5.30994 5.44983 5.55583 5.65906 5.70307 5.77858 5.97547 6.02951 6.08397 6.15660 6.21438 6.30129 6.31521 6.37426 6.40387 6.48818 6.54680 6.65315 6.88443 7.14135 7.28155 7.54903 7.55497 7.79639 8.02083 8.33316 8.94550 9.52577 11.01540 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.021774 B = 0.002296 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.641845 B =12191.293459 C =12860.229053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.513 4.513 8 H 0.062 0.938 9 C 0.163 3.837 10 N -0.474 5.474 11 C 0.008 3.992 12 C 0.041 3.959 13 O -0.298 6.298 14 C 0.179 3.821 15 C -0.178 4.178 16 C -0.024 4.024 17 C -0.149 4.149 18 C 0.183 3.817 19 C -0.242 4.242 20 N -0.617 5.617 21 H 0.417 0.583 22 C 0.135 3.865 23 C -0.142 4.142 24 C -0.092 4.092 25 C -0.152 4.152 26 C -0.068 4.068 27 C -0.091 4.091 28 C 0.009 3.991 29 H 0.262 0.738 30 H 0.035 0.965 31 H 0.002 0.998 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.136 0.864 36 H 0.131 0.869 37 H 0.134 0.866 38 H 0.122 0.878 39 H 0.126 0.874 40 H 0.124 0.876 41 H 0.124 0.876 42 H 0.079 0.921 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.025 -21.331 10.809 27.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.551 4.551 8 H 0.080 0.920 9 C 0.037 3.963 10 N -0.199 5.199 11 C -0.121 4.121 12 C -0.015 4.015 13 O -0.210 6.210 14 C 0.132 3.868 15 C -0.198 4.198 16 C -0.043 4.043 17 C -0.153 4.153 18 C 0.078 3.922 19 C -0.264 4.264 20 N -0.226 5.226 21 H 0.254 0.746 22 C 0.031 3.969 23 C -0.163 4.163 24 C -0.111 4.111 25 C -0.171 4.171 26 C -0.086 4.086 27 C -0.095 4.095 28 C -0.121 4.121 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.020 0.980 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.120 0.880 35 H 0.153 0.847 36 H 0.149 0.851 37 H 0.152 0.848 38 H 0.140 0.860 39 H 0.144 0.856 40 H 0.142 0.858 41 H 0.142 0.858 42 H 0.097 0.903 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 14.058 -20.990 10.175 27.235 hybrid contribution 0.318 1.323 0.065 1.362 sum 14.377 -19.667 10.240 26.427 Atomic orbital electron populations 1.69956 1.06061 1.26942 1.50556 1.24996 0.94909 0.99427 0.95206 0.86469 0.79688 0.82921 0.78177 1.20544 1.21190 1.19858 1.21059 0.93409 0.89896 1.50763 0.92008 1.20223 0.90831 0.88345 0.96898 1.68594 1.21535 1.02098 1.27652 1.24165 0.96168 0.94762 0.97014 1.25000 0.99735 0.93517 0.83275 1.86252 1.36504 1.61521 1.36739 1.18672 0.86988 0.89625 0.91538 1.20263 1.00752 1.01691 0.97061 1.20255 0.89955 0.96128 0.97918 1.18615 0.93392 1.04497 0.98821 1.17812 0.83143 0.96280 0.94966 1.20110 0.91676 1.08903 1.05689 1.41703 1.06753 1.45168 1.29020 0.74560 1.18215 0.94269 0.93739 0.90709 1.20097 0.93309 1.01852 1.01055 1.20811 0.99258 0.96912 0.94125 1.20889 0.92733 1.02612 1.00873 1.20520 0.96857 0.95498 0.95732 1.18741 0.91841 1.01311 0.97610 1.24226 1.01477 0.92005 0.94348 0.92788 0.94681 0.97978 0.89360 0.90631 0.88005 0.84654 0.85128 0.84790 0.86035 0.85623 0.85802 0.85810 0.90282 0.89996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.51 -14.43 8.84 -34.44 -0.30 -14.73 16 8 H 0.06 1.72 7.80 -52.48 -0.41 1.31 16 9 C 0.16 4.23 4.58 -4.98 -0.02 4.21 16 10 N -0.47 -10.14 6.25 -239.96 -1.50 -11.64 16 11 C 0.01 0.14 7.81 -2.76 -0.02 0.12 16 12 C 0.04 0.65 3.81 -25.79 -0.10 0.55 16 13 O -0.30 -4.70 10.15 -19.41 -0.20 -4.90 16 14 C 0.18 2.52 6.67 -39.22 -0.26 2.26 16 15 C -0.18 -2.19 9.97 -39.44 -0.39 -2.59 16 16 C -0.02 -0.27 10.08 -39.37 -0.40 -0.67 16 17 C -0.15 -1.87 6.34 -104.95 -0.67 -2.53 16 18 C 0.18 2.32 7.21 -83.82 -0.60 1.72 16 19 C -0.24 -3.18 9.02 -39.24 -0.35 -3.54 16 20 N -0.62 -6.62 6.13 -8.30 -0.05 -6.67 16 21 H 0.42 3.37 8.96 -40.82 -0.37 3.00 16 22 C 0.13 1.47 7.21 -83.80 -0.60 0.87 16 23 C -0.14 -1.25 10.07 -39.39 -0.40 -1.65 16 24 C -0.09 -0.71 10.01 -39.58 -0.40 -1.11 16 25 C -0.15 -1.20 10.03 -39.58 -0.40 -1.60 16 26 C -0.07 -0.63 10.09 -39.34 -0.40 -1.03 16 27 C -0.09 -1.05 6.34 -104.98 -0.67 -1.72 16 28 C 0.01 0.16 7.29 -2.77 -0.02 0.14 16 29 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.00 0.07 7.69 -51.93 -0.40 -0.33 16 32 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.08 1.37 7.79 -51.93 -0.40 0.97 16 34 H 0.10 1.43 6.02 -51.93 -0.31 1.11 16 35 H 0.14 1.47 8.06 -52.49 -0.42 1.04 16 36 H 0.13 1.09 8.06 -52.48 -0.42 0.66 16 37 H 0.13 1.66 5.90 -52.49 -0.31 1.35 16 38 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 40 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 41 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 42 H 0.08 1.63 7.78 -51.93 -0.40 1.23 16 43 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 360.56 15.07 5.43 5.43 Total: -1.00 -31.97 360.56 -12.24 -44.21 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -5.55 Total: 2.56 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: -6.10 Total: -19.78 kcal Atomic # 7 Polarization: -43.32 SS G_CDS: -0.81 Total: -44.14 kcal Atomic # 8 Polarization: -4.70 SS G_CDS: -0.20 Total: -4.90 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.97 -12.24 -44.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228486005.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.914 kcal (2) G-P(sol) polarization free energy of solvation -31.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds