Wall clock time and date at job start Tue Mar 31 2020 13:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86793 * 120.00067 * 2 1 4 4 H 1.48499 * 109.47243 * 270.00116 * 3 2 1 5 5 H 1.48504 * 109.47490 * 29.99806 * 3 2 1 6 6 H 1.48499 * 109.47273 * 149.99956 * 3 2 1 7 7 C 1.37873 * 119.99505 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99484 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00535 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47449 * 179.97438 * 9 7 2 11 11 C 1.47960 * 111.00290 * 169.99957 * 10 9 7 12 12 C 1.53940 * 86.18028 * 222.41814 * 11 10 9 13 13 O 1.42899 * 113.73078 * 138.07768 * 12 11 10 14 14 C 1.35895 * 116.99880 * 158.09317 * 13 12 11 15 15 C 1.39152 * 119.77419 * 185.98421 * 14 13 12 16 16 C 1.37699 * 120.17895 * 180.02562 * 15 14 13 17 17 C 1.39334 * 119.85941 * 0.03225 * 16 15 14 18 18 C 1.40295 * 120.15828 * 359.96626 * 17 16 15 19 19 C 1.38295 * 119.77325 * 6.01081 * 14 13 12 20 20 N 1.38365 * 108.37749 * 179.45370 * 18 17 16 21 21 H 0.97008 * 124.86149 * 179.97438 * 20 18 17 22 22 C 1.38394 * 110.27387 * 0.63286 * 20 18 17 23 23 C 1.39147 * 132.33133 * 179.23017 * 22 20 18 24 24 C 1.37830 * 120.04451 * 180.02562 * 23 22 20 25 25 C 1.38645 * 120.57996 * 0.02562 * 24 23 22 26 26 C 1.37830 * 120.22948 * 0.02562 * 25 24 23 27 27 C 1.39289 * 119.77092 * 0.27373 * 26 25 24 28 28 C 1.47960 * 110.99882 * 70.63805 * 10 9 7 29 29 H 0.97003 * 120.00092 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47236 * 59.99610 * 9 7 2 31 31 H 1.08999 * 109.46933 * 299.99984 * 9 7 2 32 32 H 1.09002 * 113.75920 * 108.09801 * 11 10 9 33 33 H 1.09003 * 113.75564 * 336.73378 * 11 10 9 34 34 H 1.08996 * 113.73355 * 269.25672 * 12 11 10 35 35 H 1.08001 * 119.90635 * 0.04407 * 15 14 13 36 36 H 1.08005 * 120.06898 * 180.02562 * 16 15 14 37 37 H 1.07995 * 119.99961 * 359.95285 * 19 14 13 38 38 H 1.08000 * 119.98003 * 0.04800 * 23 22 20 39 39 H 1.08005 * 119.71797 * 180.02562 * 24 23 22 40 40 H 1.08003 * 119.88929 * 180.02562 * 25 24 23 41 41 H 1.08000 * 120.11548 * 180.02562 * 26 25 24 42 42 H 1.09003 * 113.75972 * 23.27189 * 28 10 9 43 43 H 1.08996 * 113.76216 * 251.90461 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2055 -3.6157 0.0005 11 6 1.5161 -4.9027 0.2404 12 6 2.6928 -5.2412 1.1735 13 8 2.2968 -5.8745 2.3918 14 6 3.2408 -6.6033 3.0433 15 6 2.8875 -7.3457 4.1661 16 6 3.8374 -8.0867 4.8329 17 6 5.1557 -8.0920 4.3818 18 6 5.5164 -7.3451 3.2503 19 6 4.5461 -6.6017 2.5864 20 7 6.8717 -7.5149 3.0294 21 1 7.3714 -7.1042 2.3064 22 6 7.4094 -8.3662 3.9788 23 6 8.6971 -8.8543 4.1778 24 6 8.9569 -9.7083 5.2280 25 6 7.9436 -10.0899 6.0940 26 6 6.6614 -9.6179 5.9127 27 6 6.3841 -8.7591 4.8516 28 6 2.8982 -3.7212 1.3037 29 1 -0.4850 0.8401 0.0004 30 1 0.6246 -2.5571 -0.8897 31 1 0.6240 -2.5566 0.8903 32 1 1.4575 -5.5406 -0.6416 33 1 0.5617 -4.8001 0.7567 34 1 3.5143 -5.7554 0.6748 35 1 1.8655 -7.3408 4.5151 36 1 3.5612 -8.6625 5.7039 37 1 4.8121 -6.0233 1.7141 38 1 9.4938 -8.5634 3.5091 39 1 9.9585 -10.0836 5.3777 40 1 8.1597 -10.7593 6.9135 41 1 5.8736 -9.9160 6.5886 42 1 2.3479 -3.2730 2.1311 43 1 3.9437 -3.4150 1.2715 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228486005.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:41 Heat of formation + Delta-G solvation = 51.843497 kcal Electronic energy + Delta-G solvation = -25243.934333 eV Core-core repulsion = 21640.689673 eV Total energy + Delta-G solvation = -3603.244660 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.47666 -41.39015 -39.56032 -38.05345 -36.33419 -35.01231 -32.75106 -31.73388 -31.19784 -29.69996 -29.17664 -27.48604 -26.89216 -25.09062 -23.64259 -23.24139 -22.79868 -21.81797 -20.72746 -19.54321 -18.73044 -18.52156 -17.83406 -17.41168 -16.93220 -16.48304 -16.33609 -15.83609 -15.66556 -15.62029 -15.40922 -14.89516 -14.81425 -14.76850 -14.60892 -14.08770 -13.78074 -13.70658 -13.38088 -13.13381 -13.04270 -12.82028 -12.60035 -12.59069 -12.29491 -12.23919 -11.92254 -11.83353 -11.58043 -11.51398 -11.21642 -10.68689 -10.28778 -10.00753 -9.74282 -8.64558 -8.58486 -8.27360 -6.38372 -0.13239 0.14958 0.88101 0.96683 1.37737 1.39384 1.50394 1.91166 2.14022 2.36544 2.71527 3.02074 3.05548 3.13886 3.35835 3.62328 3.63531 3.77870 3.95719 4.04111 4.17102 4.19743 4.25176 4.35713 4.47283 4.47375 4.55957 4.62869 4.66406 4.68416 4.77960 4.82454 4.86259 4.95098 5.04279 5.09417 5.26994 5.34040 5.43024 5.45171 5.60856 5.65038 5.69158 5.70201 5.81565 6.02140 6.14580 6.28315 6.41882 6.58706 6.75618 7.31402 8.84448 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.021774 B = 0.002296 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.641845 B =12191.293459 C =12860.229053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.972 3.028 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.531 4.531 8 H 0.061 0.939 9 C 0.178 3.822 10 N -0.485 5.485 11 C 0.006 3.994 12 C 0.069 3.931 13 O -0.311 6.311 14 C 0.153 3.847 15 C -0.185 4.185 16 C -0.021 4.021 17 C -0.161 4.161 18 C 0.167 3.833 19 C -0.245 4.245 20 N -0.614 5.614 21 H 0.426 0.574 22 C 0.115 3.885 23 C -0.149 4.149 24 C -0.089 4.089 25 C -0.151 4.151 26 C -0.077 4.077 27 C -0.120 4.120 28 C 0.003 3.997 29 H 0.266 0.734 30 H 0.008 0.992 31 H -0.025 1.025 32 H 0.114 0.886 33 H 0.065 0.935 34 H 0.127 0.873 35 H 0.146 0.854 36 H 0.159 0.841 37 H 0.138 0.862 38 H 0.141 0.859 39 H 0.156 0.844 40 H 0.152 0.848 41 H 0.140 0.860 42 H 0.056 0.944 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.698 -22.799 11.948 30.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.796 3.204 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.569 4.569 8 H 0.079 0.921 9 C 0.051 3.949 10 N -0.209 5.209 11 C -0.123 4.123 12 C 0.012 3.988 13 O -0.224 6.224 14 C 0.107 3.893 15 C -0.205 4.205 16 C -0.039 4.039 17 C -0.165 4.165 18 C 0.061 3.939 19 C -0.267 4.267 20 N -0.224 5.224 21 H 0.265 0.735 22 C 0.011 3.989 23 C -0.170 4.170 24 C -0.108 4.108 25 C -0.170 4.170 26 C -0.095 4.095 27 C -0.124 4.124 28 C -0.126 4.126 29 H 0.075 0.925 30 H 0.026 0.974 31 H -0.007 1.007 32 H 0.132 0.868 33 H 0.083 0.917 34 H 0.145 0.855 35 H 0.164 0.836 36 H 0.177 0.823 37 H 0.156 0.844 38 H 0.159 0.841 39 H 0.173 0.827 40 H 0.169 0.831 41 H 0.158 0.842 42 H 0.074 0.926 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 16.762 -22.485 11.316 30.242 hybrid contribution -0.387 1.602 -0.171 1.657 sum 16.374 -20.883 11.145 28.782 Atomic orbital electron populations 1.70081 1.07714 1.28104 1.51241 1.25950 0.95830 1.03366 0.94538 0.85348 0.78474 0.78025 0.78580 1.19617 1.20551 1.18938 1.21380 0.93536 0.91131 1.50868 0.92080 1.19869 0.90905 0.89863 0.94255 1.68474 1.21065 1.02136 1.29256 1.24241 0.96251 0.93160 0.98653 1.24619 0.99158 0.91629 0.83368 1.86212 1.37319 1.62126 1.36721 1.18908 0.87156 0.90735 0.92530 1.20470 1.01649 1.01651 0.96717 1.20557 0.89307 0.95647 0.98377 1.18987 0.94275 1.04383 0.98823 1.17943 0.83983 0.96582 0.95361 1.20125 0.91582 1.09112 1.05913 1.41704 1.06149 1.45192 1.29385 0.73491 1.18575 0.95193 0.94230 0.90872 1.20443 0.92942 1.01808 1.01801 1.21263 1.00676 0.95711 0.93104 1.21295 0.92098 1.02206 1.01353 1.20830 0.98188 0.95086 0.95416 1.18994 0.91591 1.02729 0.99041 1.24224 1.01180 0.94810 0.92382 0.92500 0.97350 1.00701 0.86773 0.91679 0.85533 0.83625 0.82296 0.84436 0.84148 0.82656 0.83078 0.84200 0.92612 0.89050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.58 13.29 21.45 0.28 -56.29 16 2 C 0.00 0.10 5.46 84.65 0.46 0.56 16 3 Si 0.97 44.67 29.54 68.60 2.03 46.69 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.53 -30.63 8.84 25.60 0.23 -30.41 16 8 H 0.06 3.45 7.80 -2.91 -0.02 3.43 16 9 C 0.18 9.68 4.58 85.56 0.39 10.07 16 10 N -0.49 -21.26 6.25 -916.30 -5.73 -26.99 16 11 C 0.01 0.20 7.81 86.41 0.67 0.87 16 12 C 0.07 2.18 3.81 31.24 0.12 2.30 16 13 O -0.31 -9.91 10.15 -92.36 -0.94 -10.85 16 14 C 0.15 4.31 6.67 22.50 0.15 4.46 16 15 C -0.19 -4.50 9.97 22.36 0.22 -4.27 16 16 C -0.02 -0.44 10.08 22.41 0.23 -0.22 16 17 C -0.16 -3.90 6.34 -20.08 -0.13 -4.02 16 18 C 0.17 4.18 7.21 38.82 0.28 4.46 16 19 C -0.25 -6.42 9.02 22.49 0.20 -6.21 16 20 N -0.61 -12.75 6.13 -180.16 -1.11 -13.86 16 21 H 0.43 6.61 8.96 -92.70 -0.83 5.78 16 22 C 0.11 2.37 7.21 38.82 0.28 2.65 16 23 C -0.15 -2.27 10.07 22.39 0.23 -2.05 16 24 C -0.09 -1.08 10.01 22.27 0.22 -0.85 16 25 C -0.15 -1.90 10.03 22.27 0.22 -1.68 16 26 C -0.08 -1.27 10.09 22.43 0.23 -1.04 16 27 C -0.12 -2.62 6.34 -20.10 -0.13 -2.75 16 28 C 0.00 0.12 7.29 86.41 0.63 0.75 16 29 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 30 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 31 H -0.02 -1.45 7.69 -2.39 -0.02 -1.47 16 32 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 33 H 0.06 2.46 7.79 -2.39 -0.02 2.44 16 34 H 0.13 3.40 6.02 -2.39 -0.01 3.38 16 35 H 0.15 3.10 8.06 -2.91 -0.02 3.08 16 36 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 37 H 0.14 3.34 5.90 -2.91 -0.02 3.32 16 38 H 0.14 1.51 8.06 -2.91 -0.02 1.48 16 39 H 0.16 0.92 8.06 -2.91 -0.02 0.90 16 40 H 0.15 1.04 8.06 -2.91 -0.02 1.02 16 41 H 0.14 1.71 8.06 -2.91 -0.02 1.69 16 42 H 0.06 2.42 7.78 -2.39 -0.02 2.41 16 43 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 Total: -1.00 -70.75 360.56 -0.74 -71.49 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.21 Total: 17.19 kcal Atomic # 6 Polarization: -31.89 SS G_CDS: 4.51 Total: -27.38 kcal Atomic # 7 Polarization: -90.60 SS G_CDS: -6.55 Total: -97.15 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: -0.94 Total: -10.85 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -70.75 -0.74 -71.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228486005.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.338 kcal (2) G-P(sol) polarization free energy of solvation -70.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds