Wall clock time and date at job start Tue Mar 31 2020 13:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86790 * 120.00570 * 2 1 4 4 H 1.48504 * 109.47324 * 270.00019 * 3 2 1 5 5 H 1.48502 * 109.47126 * 29.99760 * 3 2 1 6 6 H 1.48503 * 109.47407 * 149.99756 * 3 2 1 7 7 C 1.38821 * 119.99424 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99812 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00227 * 359.97438 * 7 2 1 10 10 C 1.47426 * 125.64740 * 0.04379 * 9 7 2 11 11 C 1.54905 * 104.83320 * 204.09145 * 10 9 7 12 12 C 1.55160 * 101.58164 * 322.99489 * 11 10 9 13 13 H 1.09006 * 110.86898 * 277.06832 * 12 11 10 14 14 O 1.42894 * 110.72181 * 153.86842 * 12 11 10 15 15 C 1.35897 * 117.00437 * 161.53764 * 14 12 11 16 16 C 1.39151 * 119.77065 * 5.32632 * 15 14 12 17 17 C 1.37702 * 120.18361 * 180.02562 * 16 15 14 18 18 C 1.39343 * 119.85697 * 359.97438 * 17 16 15 19 19 C 1.40298 * 120.15203 * 0.02562 * 18 17 16 20 20 C 1.38289 * 119.77697 * 185.34850 * 15 14 12 21 21 N 1.38350 * 108.38070 * 179.97438 * 19 18 17 22 22 H 0.96997 * 124.86798 * 180.02562 * 21 19 18 23 23 C 1.38404 * 110.27507 * 0.02562 * 21 19 18 24 24 C 1.39146 * 132.32650 * 180.02562 * 23 21 19 25 25 C 1.37839 * 120.04119 * 180.02562 * 24 23 21 26 26 C 1.38645 * 120.57295 * 359.97225 * 25 24 23 27 27 C 1.37818 * 120.23701 * 0.02562 * 26 25 24 28 28 C 1.39292 * 119.77546 * 0.02562 * 27 26 25 29 29 C 1.47024 * 125.65000 * 180.02562 * 9 7 2 30 30 H 0.97001 * 119.99598 * 359.97438 * 1 2 3 31 31 H 1.09000 * 110.36628 * 322.93268 * 10 9 7 32 32 H 1.09000 * 110.36595 * 85.14176 * 10 9 7 33 33 H 1.08997 * 111.00823 * 204.91639 * 11 10 9 34 34 H 1.08996 * 111.00623 * 81.06580 * 11 10 9 35 35 H 1.08001 * 119.90454 * 0.02562 * 16 15 14 36 36 H 1.07997 * 120.07657 * 180.02562 * 17 16 15 37 37 H 1.07998 * 120.00058 * 359.72744 * 20 15 14 38 38 H 1.07995 * 119.98371 * 359.97065 * 24 23 21 39 39 H 1.07992 * 119.71138 * 179.97438 * 25 24 23 40 40 H 1.08006 * 119.87847 * 179.97438 * 26 25 24 41 41 H 1.07996 * 120.11591 * 180.02562 * 27 26 25 42 42 H 1.09000 * 109.87855 * 59.55671 * 29 9 7 43 43 H 1.09000 * 109.87693 * 298.39836 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4399 0.7001 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2024 -0.0001 9 7 1.3254 -2.3882 -0.0005 10 6 -0.1417 -2.5332 -0.0009 11 6 -0.4021 -3.9324 0.6105 12 6 0.7781 -4.7525 0.0255 13 1 0.5479 -5.1001 -0.9817 14 8 1.0997 -5.8538 0.8772 15 6 1.8265 -6.8642 0.3316 16 6 2.3147 -6.7417 -0.9657 17 6 3.0517 -7.7604 -1.5272 18 6 3.3091 -8.9165 -0.7931 19 6 2.8188 -9.0443 0.5152 20 6 2.0755 -8.0072 1.0691 21 7 3.2129 -10.2745 1.0105 22 1 3.0021 -10.6090 1.8963 23 6 3.9509 -10.9597 0.0611 24 6 4.5598 -12.2108 0.0716 25 6 5.2473 -12.6529 -1.0383 26 6 5.3393 -11.8610 -2.1726 27 6 4.7429 -10.6189 -2.2021 28 6 4.0460 -10.1595 -1.0869 29 6 1.9315 -3.7277 -0.0005 30 1 -0.4849 0.8401 0.0004 31 1 -0.5996 -1.7589 0.6148 32 1 -0.5274 -2.4845 -1.0192 33 1 -1.3594 -4.3327 0.2767 34 1 -0.3527 -3.8986 1.6988 35 1 2.1150 -5.8451 -1.5337 36 1 3.4301 -7.6633 -2.5340 37 1 1.6965 -8.0928 2.0768 38 1 4.4946 -12.8355 0.9501 39 1 5.7182 -13.6247 -1.0242 40 1 5.8812 -12.2184 -3.0358 41 1 4.8154 -10.0038 -3.0868 42 1 2.5575 -3.8512 0.8832 43 1 2.5285 -3.8643 -0.9023 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228486896.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:45 Heat of formation + Delta-G solvation = 63.542561 kcal Electronic energy + Delta-G solvation = -25578.529778 eV Core-core repulsion = 21975.792428 eV Total energy + Delta-G solvation = -3602.737351 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.57415 -39.69668 -37.73037 -36.50410 -35.21811 -32.46315 -31.81845 -30.85251 -29.40409 -28.92503 -28.21959 -27.24217 -24.60567 -24.00934 -22.46317 -22.07064 -20.95717 -20.25418 -20.16898 -18.15177 -17.81019 -17.16279 -16.69280 -16.08160 -15.51608 -15.10894 -14.99652 -14.70749 -14.61424 -14.23077 -14.00340 -13.78785 -13.70287 -13.55487 -12.79994 -12.55859 -12.42829 -12.21572 -11.96304 -11.79650 -11.59566 -11.29603 -11.13312 -11.03113 -10.93763 -10.77869 -10.49519 -10.29202 -10.10246 -9.84789 -9.63818 -9.33072 -9.13667 -8.70291 -7.74137 -7.64693 -6.90834 -5.70628 -3.12787 0.74655 1.01072 1.72907 1.88707 2.66993 3.38437 3.43275 3.45279 3.54996 3.60523 3.90043 4.43633 4.45701 4.52643 4.76569 4.81887 5.00575 5.09096 5.12150 5.21066 5.24435 5.29809 5.35511 5.47369 5.48013 5.57638 5.67587 5.70880 5.73249 5.85619 6.06923 6.22355 6.24274 6.29567 6.34806 6.38802 6.46118 6.47325 6.54946 6.58225 6.62376 6.74895 6.98206 7.34134 7.40727 7.57104 7.67309 7.79189 8.28992 9.16105 9.76371 10.39414 11.33812 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.027608 B = 0.002344 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.957165 B =11942.897649 C =12476.911231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.011 4.011 3 Si 0.917 3.083 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.223 4.223 8 H 0.079 0.921 9 N -0.601 5.601 10 C 0.152 3.848 11 C -0.134 4.134 12 C 0.070 3.930 13 H 0.079 0.921 14 O -0.302 6.302 15 C 0.181 3.819 16 C -0.227 4.227 17 C -0.020 4.020 18 C -0.150 4.150 19 C 0.179 3.821 20 C -0.193 4.193 21 N -0.617 5.617 22 H 0.416 0.584 23 C 0.134 3.866 24 C -0.143 4.143 25 C -0.093 4.093 26 C -0.152 4.152 27 C -0.067 4.067 28 C -0.089 4.089 29 C 0.117 3.883 30 H 0.253 0.747 31 H 0.114 0.886 32 H 0.017 0.983 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.139 0.861 36 H 0.127 0.873 37 H 0.130 0.870 38 H 0.121 0.879 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.124 0.876 42 H 0.035 0.965 43 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.958 -24.372 -1.431 25.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.206 4.206 3 Si 0.747 3.253 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.351 4.351 8 H 0.097 0.903 9 N -0.328 5.328 10 C 0.027 3.973 11 C -0.173 4.173 12 C 0.014 3.986 13 H 0.097 0.903 14 O -0.214 6.214 15 C 0.133 3.867 16 C -0.247 4.247 17 C -0.039 4.039 18 C -0.154 4.154 19 C 0.075 3.925 20 C -0.215 4.215 21 N -0.227 5.227 22 H 0.253 0.747 23 C 0.031 3.969 24 C -0.164 4.164 25 C -0.112 4.112 26 C -0.171 4.171 27 C -0.086 4.086 28 C -0.094 4.094 29 C -0.009 4.009 30 H 0.064 0.936 31 H 0.132 0.868 32 H 0.035 0.965 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.157 0.843 36 H 0.145 0.855 37 H 0.148 0.852 38 H 0.139 0.861 39 H 0.143 0.857 40 H 0.142 0.858 41 H 0.142 0.858 42 H 0.053 0.947 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 5.814 -24.129 -1.140 24.846 hybrid contribution 0.431 0.675 0.249 0.839 sum 6.246 -23.454 -0.891 24.287 Atomic orbital electron populations 1.69754 1.04922 1.24958 1.57542 1.24803 0.95774 0.97793 1.02242 0.86033 0.78543 0.83087 0.77601 1.21554 1.21581 1.20638 1.19088 0.90580 0.82210 1.43255 0.90348 1.44380 1.01880 0.99466 1.87115 1.22008 0.84855 0.91816 0.98597 1.23195 0.94836 0.97641 1.01639 1.23719 0.97516 0.84082 0.93309 0.90313 1.86144 1.66682 1.28151 1.40396 1.18549 0.89758 0.87313 0.91052 1.21269 1.05613 1.01768 0.96004 1.20281 0.94535 0.90360 0.98705 1.18604 1.06319 0.95692 0.94748 1.17677 0.96213 0.85882 0.92729 1.18973 1.08590 0.92123 1.01807 1.41609 1.50643 1.14730 1.15698 0.74668 1.18202 0.95807 0.93869 0.89057 1.20071 1.02392 0.93810 1.00139 1.20800 0.98262 0.99550 0.92560 1.20884 1.02662 0.94800 0.98769 1.20538 0.95706 0.95702 0.96640 1.18751 1.02253 0.93856 0.94497 1.21756 0.93837 0.86440 0.98888 0.93588 0.86843 0.96471 0.91419 0.90763 0.84338 0.85460 0.85176 0.86106 0.85667 0.85817 0.85788 0.94661 0.95445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.57 10.09 55.49 0.56 -26.01 16 2 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 3 Si 0.92 21.95 29.55 -169.99 -5.02 16.93 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.22 -6.22 10.27 -15.06 -0.15 -6.37 16 8 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 9 N -0.60 -15.42 3.39 -170.07 -0.58 -16.00 16 10 C 0.15 3.63 5.89 -2.53 -0.01 3.61 16 11 C -0.13 -2.57 6.81 -24.58 -0.17 -2.74 16 12 C 0.07 1.27 2.77 -24.90 -0.07 1.20 16 13 H 0.08 1.31 6.57 -51.93 -0.34 0.97 16 14 O -0.30 -5.23 9.87 -19.42 -0.19 -5.42 16 15 C 0.18 2.80 6.62 -39.22 -0.26 2.55 16 16 C -0.23 -3.28 8.75 -39.44 -0.34 -3.63 16 17 C -0.02 -0.26 10.08 -39.37 -0.40 -0.66 16 18 C -0.15 -2.03 6.34 -104.95 -0.67 -2.69 16 19 C 0.18 2.36 7.20 -83.83 -0.60 1.76 16 20 C -0.19 -2.67 10.00 -39.24 -0.39 -3.06 16 21 N -0.62 -6.63 6.13 -8.30 -0.05 -6.68 16 22 H 0.42 3.18 8.96 -40.82 -0.37 2.82 16 23 C 0.13 1.51 7.21 -83.80 -0.60 0.90 16 24 C -0.14 -1.28 10.07 -39.39 -0.40 -1.67 16 25 C -0.09 -0.75 10.01 -39.58 -0.40 -1.14 16 26 C -0.15 -1.29 10.03 -39.58 -0.40 -1.69 16 27 C -0.07 -0.69 10.09 -39.34 -0.40 -1.08 16 28 C -0.09 -1.10 6.35 -104.99 -0.67 -1.77 16 29 C 0.12 2.50 6.50 -3.07 -0.02 2.48 16 30 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.11 3.03 5.87 -51.93 -0.31 2.73 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 35 H 0.14 1.99 5.26 -52.49 -0.28 1.72 16 36 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 37 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 39 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 40 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 41 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.04 0.78 8.06 -51.93 -0.42 0.37 16 43 H 0.03 0.57 7.41 -51.93 -0.38 0.18 16 LS Contribution 351.86 15.07 5.30 5.30 Total: -1.00 -31.41 351.86 -11.47 -42.87 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -5.44 Total: 3.40 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: -6.04 Total: -14.41 kcal Atomic # 7 Polarization: -48.62 SS G_CDS: -0.07 Total: -48.68 kcal Atomic # 8 Polarization: -5.23 SS G_CDS: -0.19 Total: -5.42 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.41 -11.47 -42.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228486896.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.415 kcal (2) G-P(sol) polarization free energy of solvation -31.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds