Wall clock time and date at job start Tue Mar 31 2020 13:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86790 * 120.00570 * 2 1 4 4 H 1.48504 * 109.47324 * 270.00019 * 3 2 1 5 5 H 1.48502 * 109.47126 * 29.99760 * 3 2 1 6 6 H 1.48503 * 109.47407 * 149.99756 * 3 2 1 7 7 C 1.38821 * 119.99424 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99812 * 180.02562 * 7 2 1 9 9 N 1.36937 * 120.00227 * 359.97438 * 7 2 1 10 10 C 1.47426 * 125.64740 * 0.04379 * 9 7 2 11 11 C 1.54905 * 104.83320 * 204.09145 * 10 9 7 12 12 C 1.55160 * 101.58164 * 322.99489 * 11 10 9 13 13 H 1.09006 * 110.86898 * 277.06832 * 12 11 10 14 14 O 1.42894 * 110.72181 * 153.86842 * 12 11 10 15 15 C 1.35897 * 117.00437 * 161.53764 * 14 12 11 16 16 C 1.39151 * 119.77065 * 5.32632 * 15 14 12 17 17 C 1.37702 * 120.18361 * 180.02562 * 16 15 14 18 18 C 1.39343 * 119.85697 * 359.97438 * 17 16 15 19 19 C 1.40298 * 120.15203 * 0.02562 * 18 17 16 20 20 C 1.38289 * 119.77697 * 185.34850 * 15 14 12 21 21 N 1.38350 * 108.38070 * 179.97438 * 19 18 17 22 22 H 0.96997 * 124.86798 * 180.02562 * 21 19 18 23 23 C 1.38404 * 110.27507 * 0.02562 * 21 19 18 24 24 C 1.39146 * 132.32650 * 180.02562 * 23 21 19 25 25 C 1.37839 * 120.04119 * 180.02562 * 24 23 21 26 26 C 1.38645 * 120.57295 * 359.97225 * 25 24 23 27 27 C 1.37818 * 120.23701 * 0.02562 * 26 25 24 28 28 C 1.39292 * 119.77546 * 0.02562 * 27 26 25 29 29 C 1.47024 * 125.65000 * 180.02562 * 9 7 2 30 30 H 0.97001 * 119.99598 * 359.97438 * 1 2 3 31 31 H 1.09000 * 110.36628 * 322.93268 * 10 9 7 32 32 H 1.09000 * 110.36595 * 85.14176 * 10 9 7 33 33 H 1.08997 * 111.00823 * 204.91639 * 11 10 9 34 34 H 1.08996 * 111.00623 * 81.06580 * 11 10 9 35 35 H 1.08001 * 119.90454 * 0.02562 * 16 15 14 36 36 H 1.07997 * 120.07657 * 180.02562 * 17 16 15 37 37 H 1.07998 * 120.00058 * 359.72744 * 20 15 14 38 38 H 1.07995 * 119.98371 * 359.97065 * 24 23 21 39 39 H 1.07992 * 119.71138 * 179.97438 * 25 24 23 40 40 H 1.08006 * 119.87847 * 179.97438 * 26 25 24 41 41 H 1.07996 * 120.11591 * 180.02562 * 27 26 25 42 42 H 1.09000 * 109.87855 * 59.55671 * 29 9 7 43 43 H 1.09000 * 109.87693 * 298.39836 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4399 0.7001 7 6 2.0102 -1.2023 -0.0005 8 1 3.0902 -1.2024 -0.0001 9 7 1.3254 -2.3882 -0.0005 10 6 -0.1417 -2.5332 -0.0009 11 6 -0.4021 -3.9324 0.6105 12 6 0.7781 -4.7525 0.0255 13 1 0.5479 -5.1001 -0.9817 14 8 1.0997 -5.8538 0.8772 15 6 1.8265 -6.8642 0.3316 16 6 2.3147 -6.7417 -0.9657 17 6 3.0517 -7.7604 -1.5272 18 6 3.3091 -8.9165 -0.7931 19 6 2.8188 -9.0443 0.5152 20 6 2.0755 -8.0072 1.0691 21 7 3.2129 -10.2745 1.0105 22 1 3.0021 -10.6090 1.8963 23 6 3.9509 -10.9597 0.0611 24 6 4.5598 -12.2108 0.0716 25 6 5.2473 -12.6529 -1.0383 26 6 5.3393 -11.8610 -2.1726 27 6 4.7429 -10.6189 -2.2021 28 6 4.0460 -10.1595 -1.0869 29 6 1.9315 -3.7277 -0.0005 30 1 -0.4849 0.8401 0.0004 31 1 -0.5996 -1.7589 0.6148 32 1 -0.5274 -2.4845 -1.0192 33 1 -1.3594 -4.3327 0.2767 34 1 -0.3527 -3.8986 1.6988 35 1 2.1150 -5.8451 -1.5337 36 1 3.4301 -7.6633 -2.5340 37 1 1.6965 -8.0928 2.0768 38 1 4.4946 -12.8355 0.9501 39 1 5.7182 -13.6247 -1.0242 40 1 5.8812 -12.2184 -3.0358 41 1 4.8154 -10.0038 -3.0868 42 1 2.5575 -3.8512 0.8832 43 1 2.5285 -3.8643 -0.9023 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228486896.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:44 Heat of formation + Delta-G solvation = 47.018358 kcal Electronic energy + Delta-G solvation = -25579.246322 eV Core-core repulsion = 21975.792428 eV Total energy + Delta-G solvation = -3603.453894 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.46043 -40.94722 -38.85179 -37.87133 -36.28146 -34.32181 -32.80366 -31.75909 -31.19358 -29.86931 -29.25760 -28.80820 -26.51204 -24.93606 -23.55270 -22.96564 -22.17572 -21.76476 -21.55075 -19.34571 -19.04148 -18.59974 -17.69383 -17.25469 -16.82539 -16.52815 -16.38882 -15.82654 -15.76465 -15.33083 -15.10432 -14.99288 -14.71000 -14.65587 -14.35760 -14.03571 -13.70383 -13.45356 -13.33035 -13.06356 -12.87773 -12.73843 -12.59844 -12.32310 -12.24465 -12.03457 -11.99910 -11.84234 -11.77311 -11.57785 -11.39105 -10.77785 -10.27185 -10.01960 -8.95525 -8.65228 -8.58095 -7.81044 -5.26312 -0.12969 0.13185 0.85987 0.97347 1.46916 1.48738 1.57524 1.72818 2.35551 2.50192 2.71387 3.01576 3.29974 3.58591 3.61691 3.65162 3.70387 3.91180 3.93989 4.02605 4.11235 4.17795 4.22580 4.37344 4.41893 4.48995 4.58271 4.62414 4.69993 4.78839 4.87937 4.94223 4.96105 4.98033 5.10019 5.25329 5.31725 5.40235 5.43014 5.56115 5.57429 5.64652 5.68560 5.74409 5.83065 6.15372 6.25980 6.43853 6.60125 7.06662 7.71666 8.34526 9.21239 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.027608 B = 0.002344 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.957165 B =11942.897649 C =12476.911231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.064 4.064 3 Si 0.983 3.017 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.272 1.272 7 C -0.243 4.243 8 H 0.079 0.921 9 N -0.623 5.623 10 C 0.154 3.846 11 C -0.121 4.121 12 C 0.088 3.912 13 H 0.097 0.903 14 O -0.310 6.310 15 C 0.154 3.846 16 C -0.236 4.236 17 C -0.022 4.022 18 C -0.161 4.161 19 C 0.171 3.829 20 C -0.193 4.193 21 N -0.609 5.609 22 H 0.429 0.571 23 C 0.118 3.882 24 C -0.146 4.146 25 C -0.088 4.088 26 C -0.150 4.150 27 C -0.080 4.080 28 C -0.121 4.121 29 C 0.116 3.884 30 H 0.250 0.750 31 H 0.082 0.918 32 H 0.002 0.998 33 H 0.099 0.901 34 H 0.069 0.931 35 H 0.135 0.865 36 H 0.148 0.852 37 H 0.141 0.859 38 H 0.145 0.855 39 H 0.158 0.842 40 H 0.150 0.850 41 H 0.135 0.865 42 H 0.023 0.977 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.437 -27.168 -1.868 28.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.256 4.256 3 Si 0.811 3.189 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.197 1.197 7 C -0.372 4.372 8 H 0.097 0.903 9 N -0.351 5.351 10 C 0.029 3.971 11 C -0.160 4.160 12 C 0.031 3.969 13 H 0.115 0.885 14 O -0.223 6.223 15 C 0.107 3.893 16 C -0.256 4.256 17 C -0.041 4.041 18 C -0.165 4.165 19 C 0.065 3.935 20 C -0.215 4.215 21 N -0.220 5.220 22 H 0.268 0.732 23 C 0.015 3.985 24 C -0.166 4.166 25 C -0.107 4.107 26 C -0.169 4.169 27 C -0.099 4.099 28 C -0.125 4.125 29 C -0.009 4.009 30 H 0.060 0.940 31 H 0.100 0.900 32 H 0.020 0.980 33 H 0.117 0.883 34 H 0.088 0.912 35 H 0.153 0.847 36 H 0.166 0.834 37 H 0.159 0.841 38 H 0.163 0.837 39 H 0.175 0.825 40 H 0.168 0.832 41 H 0.152 0.848 42 H 0.041 0.959 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 7.312 -26.982 -1.563 27.999 hybrid contribution 0.111 1.302 0.344 1.351 sum 7.423 -25.680 -1.219 26.759 Atomic orbital electron populations 1.69995 1.06130 1.25324 1.58195 1.25648 0.96731 1.00959 1.02302 0.85014 0.77533 0.78812 0.77555 1.21111 1.21693 1.19665 1.19427 0.90994 0.83564 1.43205 0.90322 1.44667 1.02830 1.00462 1.87109 1.21791 0.84014 0.93856 0.97398 1.23004 0.96841 0.95036 1.01094 1.23398 0.95374 0.83799 0.94280 0.88522 1.86094 1.67600 1.28261 1.40372 1.18734 0.91078 0.87510 0.91954 1.21263 1.06389 1.02154 0.95802 1.20496 0.94031 0.89930 0.99613 1.18951 1.06203 0.96288 0.95026 1.17753 0.96194 0.86608 0.92974 1.19076 1.08405 0.91824 1.02164 1.41581 1.50229 1.13867 1.16328 0.73156 1.18546 0.96376 0.94767 0.88835 1.20453 1.01637 0.93076 1.01475 1.21275 0.97029 1.00601 0.91749 1.21280 1.01764 0.93986 0.99892 1.20813 0.95742 0.96755 0.96541 1.18986 1.03717 0.93794 0.96012 1.21852 0.94978 0.85632 0.98468 0.94029 0.89988 0.97974 0.88278 0.91180 0.84691 0.83429 0.84123 0.83687 0.82454 0.83208 0.84754 0.95864 0.94742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.04 10.09 21.65 0.22 -55.82 16 2 C -0.06 -3.62 5.49 84.86 0.47 -3.16 16 3 Si 0.98 45.75 29.55 68.60 2.03 47.78 16 4 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 5 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 7 C -0.24 -13.86 10.27 84.04 0.86 -13.00 16 8 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 9 N -0.62 -32.82 3.39 -691.99 -2.35 -35.17 16 10 C 0.15 7.58 5.89 86.85 0.51 8.09 16 11 C -0.12 -4.63 6.81 31.99 0.22 -4.41 16 12 C 0.09 3.18 2.77 31.78 0.09 3.27 16 13 H 0.10 3.16 6.57 -2.38 -0.02 3.14 16 14 O -0.31 -10.73 9.87 -92.39 -0.91 -11.64 16 15 C 0.15 4.77 6.62 22.50 0.15 4.92 16 16 C -0.24 -6.83 8.75 22.36 0.20 -6.64 16 17 C -0.02 -0.58 10.08 22.41 0.23 -0.35 16 18 C -0.16 -4.25 6.34 -20.08 -0.13 -4.38 16 19 C 0.17 4.39 7.20 38.82 0.28 4.67 16 20 C -0.19 -5.29 10.00 22.49 0.22 -5.06 16 21 N -0.61 -12.32 6.13 -180.16 -1.11 -13.42 16 22 H 0.43 5.94 8.96 -92.71 -0.83 5.11 16 23 C 0.12 2.44 7.21 38.81 0.28 2.72 16 24 C -0.15 -2.15 10.07 22.39 0.23 -1.93 16 25 C -0.09 -1.08 10.01 22.27 0.22 -0.85 16 26 C -0.15 -2.06 10.03 22.27 0.22 -1.84 16 27 C -0.08 -1.48 10.09 22.42 0.23 -1.25 16 28 C -0.12 -2.83 6.35 -20.10 -0.13 -2.96 16 29 C 0.12 5.05 6.50 86.73 0.56 5.61 16 30 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 31 H 0.08 4.57 5.87 -2.39 -0.01 4.56 16 32 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 33 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 34 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 35 H 0.14 3.89 5.26 -2.91 -0.02 3.88 16 36 H 0.15 3.02 8.06 -2.91 -0.02 2.99 16 37 H 0.14 3.41 8.06 -2.91 -0.02 3.38 16 38 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 39 H 0.16 0.91 8.06 -2.91 -0.02 0.88 16 40 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 41 H 0.13 2.05 8.06 -2.91 -0.02 2.02 16 42 H 0.02 1.06 8.06 -2.39 -0.02 1.04 16 43 H 0.03 1.44 7.41 -2.39 -0.02 1.43 16 Total: -1.00 -69.30 351.86 2.80 -66.50 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: 0.22 Total: 18.31 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: 4.71 Total: -16.54 kcal Atomic # 7 Polarization: -101.18 SS G_CDS: -3.24 Total: -104.41 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: -0.91 Total: -11.64 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -69.30 2.80 -66.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228486896.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.518 kcal (2) G-P(sol) polarization free energy of solvation -69.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds