Wall clock time and date at job start Tue Mar 31 2020 12:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21465 * 120.00177 * 2 1 4 4 C 1.40791 * 119.99956 * 179.97438 * 2 1 3 5 5 C 1.35557 * 120.00145 * 179.97438 * 4 2 1 6 6 C 1.46780 * 119.99997 * 180.02562 * 5 4 2 7 7 C 1.40089 * 120.11784 * 180.02562 * 6 5 4 8 8 C 1.37606 * 119.87484 * 180.02562 * 7 6 5 9 9 C 1.39070 * 120.12276 * 359.97438 * 8 7 6 10 10 O 1.35712 * 119.87781 * 179.97438 * 9 8 7 11 11 C 1.42905 * 116.99681 * 185.13537 * 10 9 8 12 12 H 1.08997 * 109.47193 * 34.94538 * 11 10 9 13 13 C 1.50699 * 109.47041 * 274.94155 * 11 10 9 14 14 H 1.07997 * 120.00260 * 305.60507 * 13 11 10 15 15 C 1.37879 * 119.99678 * 125.60769 * 13 11 10 16 16 N 1.31506 * 120.00047 * 185.07852 * 15 13 11 17 17 Si 1.86801 * 120.00124 * 5.35420 * 15 13 11 18 18 H 1.48496 * 109.47195 * 264.71422 * 17 15 13 19 19 H 1.48504 * 109.46966 * 24.71365 * 17 15 13 20 20 H 1.48493 * 109.47178 * 144.71162 * 17 15 13 21 21 C 1.50705 * 109.46523 * 154.94481 * 11 10 9 22 22 C 1.38230 * 120.00130 * 34.80638 * 21 11 10 23 23 C 1.38233 * 119.99925 * 179.78893 * 22 21 11 24 24 C 1.38236 * 120.00026 * 0.43574 * 23 22 21 25 25 C 1.38238 * 119.99637 * 359.81239 * 24 23 22 26 26 C 1.38229 * 120.00291 * 359.97438 * 25 24 23 27 27 C 1.39075 * 120.24393 * 0.25530 * 9 8 7 28 28 C 1.37604 * 120.11851 * 359.48370 * 27 9 8 29 29 H 1.08999 * 109.47711 * 270.00054 * 1 2 3 30 30 H 1.09001 * 109.47167 * 30.00758 * 1 2 3 31 31 H 1.09003 * 109.47469 * 150.00235 * 1 2 3 32 32 H 1.07996 * 120.00131 * 0.02562 * 4 2 1 33 33 H 1.07996 * 119.99724 * 0.02562 * 5 4 2 34 34 H 1.07999 * 120.06389 * 0.02562 * 7 6 5 35 35 H 1.07997 * 119.94233 * 179.97438 * 8 7 6 36 36 H 0.97010 * 120.00338 * 180.27355 * 16 15 13 37 37 H 1.08002 * 119.99931 * 359.97438 * 22 21 11 38 38 H 1.08007 * 120.00023 * 180.27235 * 23 22 21 39 39 H 1.07997 * 120.00172 * 179.83821 * 24 23 22 40 40 H 1.08000 * 119.99741 * 179.97438 * 25 24 23 41 41 H 1.08002 * 120.00224 * 179.97438 * 26 25 24 42 42 H 1.07994 * 119.93621 * 179.74481 * 27 9 8 43 43 H 1.08000 * 120.05984 * 180.27569 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1143 1.0519 0.0000 4 6 2.2109 -1.2193 0.0005 5 6 3.5665 -1.2193 0.0000 6 6 4.3003 -2.4905 0.0000 7 6 5.7012 -2.4934 0.0000 8 6 6.3842 -3.6881 -0.0005 9 6 5.6862 -4.8910 -0.0005 10 8 6.3648 -6.0663 -0.0016 11 6 5.5908 -7.2621 -0.1155 12 1 4.7340 -7.0800 -0.7642 13 6 5.1076 -7.6797 1.2495 14 1 5.8147 -7.8157 2.0544 15 6 3.7627 -7.8881 1.4708 16 7 3.3294 -8.1546 2.6834 17 14 2.5571 -7.7997 0.0466 18 1 1.9672 -6.4385 -0.0187 19 1 3.2691 -8.0920 -1.2235 20 1 1.4770 -8.7982 0.2497 21 6 6.4424 -8.3575 -0.7037 22 6 7.7888 -8.4258 -0.3979 23 6 8.5690 -9.4331 -0.9341 24 6 8.0048 -10.3668 -1.7831 25 6 6.6595 -10.2954 -2.0929 26 6 5.8783 -9.2907 -1.5533 27 6 4.2955 -4.8939 -0.0053 28 6 3.6025 -3.7052 0.0006 29 1 -0.3634 0.0000 1.0276 30 1 -0.3633 0.8899 -0.5140 31 1 -0.3634 -0.8900 -0.5138 32 1 1.6709 -2.1546 0.0005 33 1 4.1064 -0.2840 -0.0004 34 1 6.2442 -1.5599 0.0004 35 1 7.4641 -3.6916 -0.0009 36 1 2.3837 -8.3052 2.8385 37 1 8.2304 -7.6940 0.2622 38 1 9.6200 -9.4891 -0.6917 39 1 8.6149 -11.1522 -2.2040 40 1 6.2188 -11.0245 -2.7566 41 1 4.8273 -9.2346 -1.7957 42 1 3.7586 -5.8309 -0.0095 43 1 2.5225 -3.7086 0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228497528.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:56 Heat of formation + Delta-G solvation = -18.219838 kcal Electronic energy + Delta-G solvation = -25671.138349 eV Core-core repulsion = 22032.562764 eV Total energy + Delta-G solvation = -3638.575586 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.136 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.30162 -40.53154 -39.89036 -38.44433 -35.27252 -34.57991 -32.99255 -32.12831 -31.73127 -31.50630 -29.53355 -29.11373 -25.45813 -24.66115 -23.83447 -23.40651 -22.16482 -21.50717 -19.84197 -19.60416 -19.06060 -18.00753 -17.38538 -16.94742 -16.70251 -16.32847 -15.94331 -15.86474 -15.72150 -15.52104 -15.26714 -15.07189 -14.83475 -14.68354 -14.25506 -14.21418 -13.91838 -13.42799 -13.38053 -13.29534 -13.12960 -12.99320 -12.80960 -12.74133 -12.45877 -12.14563 -11.92994 -11.68960 -11.67449 -11.34870 -10.91771 -10.76814 -10.71855 -10.05450 -9.75252 -9.51752 -8.73443 -8.52396 -6.62388 -0.61534 0.38478 0.52909 0.57989 0.83038 1.13323 1.17497 1.25606 2.05168 2.08229 2.36345 2.87905 2.91637 3.02521 3.34877 3.71340 3.87219 3.95921 4.01041 4.14190 4.19962 4.23177 4.30052 4.30999 4.38080 4.39160 4.43736 4.62938 4.66434 4.69443 4.77172 4.82104 4.99301 5.08220 5.10360 5.11238 5.20732 5.21522 5.24929 5.43761 5.47254 5.63665 5.64096 5.67438 5.73893 5.85502 6.01024 6.20260 6.41827 6.63496 6.66010 7.06129 8.63759 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015787 B = 0.003341 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.204830 B = 8379.637687 C = 9364.421579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.384 3.616 3 O -0.522 6.522 4 C -0.283 4.283 5 C 0.028 3.972 6 C -0.150 4.150 7 C -0.039 4.039 8 C -0.177 4.177 9 C 0.156 3.844 10 O -0.326 6.326 11 C 0.214 3.786 12 H 0.050 0.950 13 C -0.536 4.536 14 H 0.036 0.964 15 C 0.041 3.959 16 N -0.918 5.918 17 Si 0.901 3.099 18 H -0.243 1.243 19 H -0.235 1.235 20 H -0.273 1.273 21 C -0.073 4.073 22 C -0.124 4.124 23 C -0.121 4.121 24 C -0.131 4.131 25 C -0.118 4.118 26 C -0.144 4.144 27 C -0.241 4.241 28 C -0.056 4.056 29 H 0.107 0.893 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.169 0.831 35 H 0.148 0.852 36 H 0.275 0.725 37 H 0.109 0.891 38 H 0.146 0.854 39 H 0.156 0.844 40 H 0.150 0.850 41 H 0.113 0.887 42 H 0.116 0.884 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.222 6.409 -10.529 12.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.270 3.730 3 O -0.406 6.406 4 C -0.302 4.302 5 C 0.009 3.991 6 C -0.150 4.150 7 C -0.057 4.057 8 C -0.195 4.195 9 C 0.108 3.892 10 O -0.239 6.239 11 C 0.159 3.841 12 H 0.068 0.932 13 C -0.573 4.573 14 H 0.054 0.946 15 C -0.161 4.161 16 N -0.556 5.556 17 Si 0.724 3.276 18 H -0.168 1.168 19 H -0.159 1.159 20 H -0.199 1.199 21 C -0.073 4.073 22 C -0.142 4.142 23 C -0.139 4.139 24 C -0.149 4.149 25 C -0.136 4.136 26 C -0.163 4.163 27 C -0.260 4.260 28 C -0.074 4.074 29 H 0.125 0.875 30 H 0.104 0.896 31 H 0.120 0.880 32 H 0.159 0.841 33 H 0.159 0.841 34 H 0.187 0.813 35 H 0.166 0.834 36 H 0.084 0.916 37 H 0.128 0.872 38 H 0.164 0.836 39 H 0.173 0.827 40 H 0.168 0.832 41 H 0.131 0.869 42 H 0.134 0.866 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.567 6.825 -10.394 12.448 hybrid contribution -1.049 -0.596 0.408 1.274 sum -0.482 6.229 -9.986 11.779 Atomic orbital electron populations 1.22223 0.91900 1.05571 1.05528 1.21415 0.93680 0.87790 0.70106 1.90561 1.73151 1.36286 1.40614 1.22684 0.95777 1.00482 1.11224 1.22751 0.94718 0.96026 0.85602 1.19000 0.93946 0.92392 1.09679 1.21506 0.92628 0.98103 0.93419 1.20659 1.01280 0.89172 1.08435 1.19740 0.91027 0.87074 0.91328 1.85969 1.38719 1.13351 1.85906 1.19359 0.89845 0.79862 0.94990 0.93236 1.21207 0.93207 1.47999 0.94936 0.94606 1.25788 0.99450 0.92958 0.97902 1.69991 1.16405 1.46883 1.22325 0.86579 0.79792 0.80104 0.81104 1.16759 1.15873 1.19897 1.20015 0.94822 0.97019 0.95489 1.21017 0.93419 0.99427 1.00334 1.21441 1.00674 0.94352 0.97411 1.21460 0.95194 0.99621 0.98585 1.21379 0.94529 0.97653 1.00012 1.21109 1.00176 0.96587 0.98388 1.21609 0.94313 0.99998 1.10055 1.21393 1.00463 0.90931 0.94626 0.87511 0.89557 0.88023 0.84059 0.84095 0.81347 0.83407 0.91554 0.87238 0.83611 0.82663 0.83224 0.86866 0.86610 0.84258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.93 10.21 71.23 0.73 -2.20 16 2 C 0.38 8.80 7.00 26.31 0.18 8.99 16 3 O -0.52 -15.60 16.84 -3.61 -0.06 -15.66 16 4 C -0.28 -6.52 9.06 22.27 0.20 -6.32 16 5 C 0.03 0.68 9.41 23.88 0.22 0.90 16 6 C -0.15 -4.31 5.87 -20.15 -0.12 -4.43 16 7 C -0.04 -1.05 9.79 22.57 0.22 -0.83 16 8 C -0.18 -5.76 9.97 22.32 0.22 -5.54 16 9 C 0.16 6.41 6.61 22.67 0.15 6.56 16 10 O -0.33 -14.96 8.91 -90.33 -0.81 -15.76 16 11 C 0.21 10.17 1.91 29.10 0.06 10.23 16 12 H 0.05 2.32 3.38 -2.39 -0.01 2.31 16 13 C -0.54 -30.14 8.68 25.60 0.22 -29.91 16 14 H 0.04 2.30 8.06 -2.91 -0.02 2.28 16 15 C 0.04 2.25 5.29 84.66 0.45 2.70 16 16 N -0.92 -54.44 13.96 21.45 0.30 -54.14 16 17 Si 0.90 39.66 24.63 68.60 1.69 41.35 16 18 H -0.24 -9.82 6.68 99.48 0.66 -9.15 16 19 H -0.23 -9.49 4.92 99.48 0.49 -9.00 16 20 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 21 C -0.07 -3.14 4.99 -19.87 -0.10 -3.24 16 22 C -0.12 -4.81 9.35 22.27 0.21 -4.61 16 23 C -0.12 -3.67 10.05 22.27 0.22 -3.45 16 24 C -0.13 -3.51 10.05 22.27 0.22 -3.29 16 25 C -0.12 -3.50 10.05 22.27 0.22 -3.27 16 26 C -0.14 -5.47 9.68 22.27 0.22 -5.25 16 27 C -0.24 -9.92 8.69 22.32 0.19 -9.73 16 28 C -0.06 -1.90 9.40 22.57 0.21 -1.68 16 29 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.09 1.22 8.14 -2.39 -0.02 1.21 16 31 H 0.10 1.15 8.09 -2.39 -0.02 1.13 16 32 H 0.14 2.89 6.07 -2.91 -0.02 2.87 16 33 H 0.14 3.20 7.44 -2.91 -0.02 3.18 16 34 H 0.17 3.13 8.06 -2.91 -0.02 3.11 16 35 H 0.15 4.16 8.06 -2.91 -0.02 4.14 16 36 H 0.27 15.04 8.31 -92.70 -0.77 14.27 16 37 H 0.11 4.39 7.62 -2.91 -0.02 4.37 16 38 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 39 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 40 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 41 H 0.11 4.22 6.61 -2.91 -0.02 4.20 16 42 H 0.12 5.15 1.35 -2.91 0.00 5.14 16 43 H 0.14 4.06 6.16 -2.91 -0.02 4.04 16 Total: -1.00 -70.50 358.77 5.84 -64.65 By element: Atomic # 1 Polarization: 33.15 SS G_CDS: 0.78 Total: 33.93 kcal Atomic # 6 Polarization: -58.31 SS G_CDS: 3.94 Total: -54.37 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: 0.30 Total: -54.14 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -0.87 Total: -31.42 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 1.69 Total: 41.35 kcal Total: -70.50 5.84 -64.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228497528.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.432 kcal (2) G-P(sol) polarization free energy of solvation -70.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds