Wall clock time and date at job start Tue Mar 31 2020 12:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21472 * 119.99948 * 2 1 4 4 C 1.40785 * 120.00262 * 180.02562 * 2 1 3 5 5 C 1.35558 * 120.00452 * 186.42003 * 4 2 1 6 6 C 1.46775 * 119.99452 * 11.40920 * 5 4 2 7 7 C 1.40096 * 120.11933 * 222.48888 * 6 5 4 8 8 C 1.37606 * 119.87382 * 180.02562 * 7 6 5 9 9 C 1.39067 * 120.12852 * 0.27623 * 8 7 6 10 10 O 1.35701 * 119.88083 * 179.69827 * 9 8 7 11 11 C 1.42895 * 116.99975 * 5.47134 * 10 9 8 12 12 H 1.09001 * 109.47528 * 35.66297 * 11 10 9 13 13 C 1.50703 * 109.46946 * 275.65746 * 11 10 9 14 14 H 1.07994 * 120.00166 * 329.91621 * 13 11 10 15 15 C 1.37879 * 119.99856 * 149.90813 * 13 11 10 16 16 N 1.31512 * 120.00246 * 179.85171 * 15 13 11 17 17 Si 1.86801 * 119.99921 * 359.85845 * 15 13 11 18 18 H 1.48498 * 109.47458 * 88.81414 * 17 15 13 19 19 H 1.48504 * 109.47034 * 208.81537 * 17 15 13 20 20 H 1.48505 * 109.47051 * 328.81189 * 17 15 13 21 21 C 1.50704 * 109.47381 * 155.66486 * 11 10 9 22 22 C 1.38241 * 120.00037 * 37.18025 * 21 11 10 23 23 C 1.38234 * 119.99829 * 179.79055 * 22 21 11 24 24 C 1.38233 * 120.00011 * 0.44735 * 23 22 21 25 25 C 1.38237 * 120.00138 * 359.81062 * 24 23 22 26 26 C 1.38231 * 119.99950 * 359.97438 * 25 24 23 27 27 C 1.39078 * 120.23929 * 359.45125 * 9 8 7 28 28 C 1.37604 * 120.12148 * 0.54861 * 27 9 8 29 29 H 1.09003 * 109.47228 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47209 * 299.99978 * 1 2 3 31 31 H 1.09001 * 109.47122 * 60.00079 * 1 2 3 32 32 H 1.08002 * 119.99906 * 6.41759 * 4 2 1 33 33 H 1.07998 * 120.00142 * 191.40765 * 5 4 2 34 34 H 1.08001 * 120.06043 * 0.05003 * 7 6 5 35 35 H 1.08007 * 119.93600 * 180.02562 * 8 7 6 36 36 H 0.97002 * 119.99930 * 180.02562 * 16 15 13 37 37 H 1.07999 * 119.99750 * 0.02562 * 22 21 11 38 38 H 1.08001 * 119.99950 * 180.27367 * 23 22 21 39 39 H 1.07997 * 120.00194 * 179.83442 * 24 23 22 40 40 H 1.07997 * 120.00105 * 180.02562 * 25 24 23 41 41 H 1.08004 * 120.00272 * 180.02562 * 26 25 24 42 42 H 1.07998 * 119.93491 * 180.25662 * 27 9 8 43 43 H 1.07997 * 120.06026 * 179.71060 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1143 1.0520 0.0000 4 6 2.2109 -1.2192 -0.0005 5 6 3.5602 -1.2230 0.1307 6 6 4.2628 0.0049 0.5219 7 6 5.4566 0.3655 -0.1165 8 6 6.1114 1.5174 0.2546 9 6 5.5934 2.3202 1.2652 10 8 6.2465 3.4519 1.6313 11 6 7.3906 3.8196 0.8583 12 1 7.2212 3.5614 -0.1871 13 6 8.6005 3.0800 1.3687 14 1 8.6651 2.8046 2.4109 15 6 9.6249 2.7549 0.5050 16 7 10.6820 2.1121 0.9509 17 14 9.5112 3.2277 -1.2987 18 1 10.0795 4.5861 -1.4912 19 1 10.2757 2.2510 -2.1155 20 1 8.0882 3.2216 -1.7233 21 6 7.6220 5.3039 0.9779 22 6 7.3943 5.9441 2.1818 23 6 7.6107 7.3049 2.2927 24 6 8.0458 8.0271 1.1973 25 6 8.2683 7.3879 -0.0080 26 6 8.0562 6.0264 -0.1178 27 6 4.4057 1.9700 1.8984 28 6 3.7425 0.8202 1.5353 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6760 -2.1516 -0.1055 33 1 4.1180 -2.1294 -0.0525 34 1 5.8619 -0.2593 -0.8986 35 1 7.0316 1.7966 -0.2372 36 1 11.4028 1.8838 0.3433 37 1 7.0511 5.3804 3.0367 38 1 7.4371 7.8043 3.2345 39 1 8.2122 9.0907 1.2832 40 1 8.6086 7.9520 -0.8637 41 1 8.2305 5.5268 -1.0593 42 1 4.0056 2.5991 2.6797 43 1 2.8227 0.5468 2.0309 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228497529.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:00 Heat of formation + Delta-G solvation = 13.869256 kcal Electronic energy + Delta-G solvation = -26243.233842 eV Core-core repulsion = 22606.049744 eV Total energy + Delta-G solvation = -3637.184098 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.136 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.09106 -39.29915 -38.31261 -36.63285 -33.52007 -32.97629 -31.36372 -30.62159 -30.44996 -30.28657 -28.03173 -27.35523 -23.92371 -22.91936 -22.27337 -22.00808 -21.16323 -20.08401 -18.57402 -17.52027 -17.26806 -16.47390 -16.28424 -15.49344 -15.13538 -14.97654 -14.84639 -14.40557 -14.10161 -13.89945 -13.64046 -13.42776 -13.11361 -13.07059 -12.94789 -12.70142 -12.64634 -12.31464 -12.25571 -12.10085 -11.78620 -11.64308 -11.25760 -11.05262 -10.87360 -10.53384 -10.43391 -10.10941 -9.82713 -9.62862 -9.49350 -9.18956 -8.89368 -8.32371 -8.30444 -7.96725 -7.12877 -6.37067 -4.40221 0.66557 1.96728 1.98492 2.02804 2.25829 3.06018 3.09233 3.10050 3.16751 4.06824 4.11737 4.36992 4.42362 4.47165 4.93226 4.95431 5.05268 5.26277 5.34387 5.38382 5.44145 5.44721 5.45863 5.46723 5.61475 5.78140 5.79890 5.90352 5.98677 6.09061 6.11060 6.21317 6.23916 6.33066 6.40815 6.56554 6.60284 6.66489 6.87522 7.00183 7.02622 7.04181 7.12802 7.18987 7.29377 7.42911 7.61841 7.77911 8.07450 8.34327 8.74545 9.20840 10.74712 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.014182 B = 0.003876 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.802761 B = 7222.520063 C = 8327.134231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.367 3.633 3 O -0.447 6.447 4 C -0.286 4.286 5 C 0.034 3.966 6 C -0.158 4.158 7 C -0.051 4.051 8 C -0.210 4.210 9 C 0.188 3.812 10 O -0.310 6.310 11 C 0.205 3.795 12 H 0.052 0.948 13 C -0.529 4.529 14 H 0.089 0.911 15 C 0.088 3.912 16 N -0.875 5.875 17 Si 0.850 3.150 18 H -0.261 1.261 19 H -0.280 1.280 20 H -0.257 1.257 21 C -0.039 4.039 22 C -0.098 4.098 23 C -0.123 4.123 24 C -0.143 4.143 25 C -0.120 4.120 26 C -0.131 4.131 27 C -0.180 4.180 28 C -0.005 4.005 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.129 0.871 33 H 0.127 0.873 34 H 0.117 0.883 35 H 0.138 0.862 36 H 0.270 0.730 37 H 0.123 0.877 38 H 0.114 0.886 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.109 0.891 42 H 0.123 0.877 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.548 -2.431 -2.408 14.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.248 3.752 3 O -0.325 6.325 4 C -0.305 4.305 5 C 0.015 3.985 6 C -0.158 4.158 7 C -0.069 4.069 8 C -0.228 4.228 9 C 0.140 3.860 10 O -0.223 6.223 11 C 0.150 3.850 12 H 0.069 0.931 13 C -0.566 4.566 14 H 0.107 0.893 15 C -0.118 4.118 16 N -0.511 5.511 17 Si 0.677 3.323 18 H -0.186 1.186 19 H -0.206 1.206 20 H -0.182 1.182 21 C -0.040 4.040 22 C -0.116 4.116 23 C -0.142 4.142 24 C -0.161 4.161 25 C -0.138 4.138 26 C -0.149 4.149 27 C -0.199 4.199 28 C -0.023 4.023 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.102 0.898 32 H 0.147 0.853 33 H 0.145 0.855 34 H 0.135 0.865 35 H 0.156 0.844 36 H 0.081 0.919 37 H 0.141 0.859 38 H 0.132 0.868 39 H 0.130 0.870 40 H 0.132 0.868 41 H 0.127 0.873 42 H 0.141 0.859 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -14.067 -1.825 -2.296 14.369 hybrid contribution 0.328 -0.100 -1.181 1.230 sum -13.739 -1.924 -3.477 14.302 Atomic orbital electron populations 1.22209 0.95533 1.03724 1.04115 1.20964 0.91586 0.89379 0.73270 1.90759 1.70830 1.35060 1.35842 1.22414 0.95633 0.99482 1.12924 1.22777 0.93982 0.96513 0.85219 1.18618 0.97558 0.97628 1.01999 1.20943 0.92533 0.95847 0.97596 1.21360 1.02724 0.97244 1.01516 1.19176 0.89936 0.85892 0.90993 1.85894 1.42262 1.38023 1.56072 1.19635 0.84125 0.88776 0.92440 0.93086 1.21210 1.00943 1.35581 0.98822 0.89343 1.24869 0.94983 0.93701 0.98225 1.69851 1.07524 1.37873 1.35862 0.87366 0.79151 0.79755 0.86017 1.18646 1.20613 1.18219 1.20170 0.95628 0.94960 0.93248 1.20922 0.99241 0.93861 0.97599 1.21069 1.00437 0.94515 0.98130 1.20916 1.02519 0.99153 0.93508 1.20914 1.00978 0.94351 0.97587 1.20893 1.01797 0.94115 0.98135 1.20182 0.95665 0.99542 1.04506 1.20610 0.95594 0.91964 0.94145 0.90737 0.89595 0.89771 0.85344 0.85480 0.86474 0.84418 0.91948 0.85894 0.86760 0.86954 0.86828 0.87263 0.85906 0.87128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.64 10.30 36.00 0.37 -1.27 16 2 C 0.37 4.44 6.04 -33.35 -0.20 4.24 16 3 O -0.45 -7.36 12.65 5.39 0.07 -7.29 16 4 C -0.29 -3.03 9.52 -39.58 -0.38 -3.41 16 5 C 0.03 0.41 9.81 -37.09 -0.36 0.05 16 6 C -0.16 -2.57 4.54 -105.05 -0.48 -3.05 16 7 C -0.05 -0.92 9.79 -39.12 -0.38 -1.30 16 8 C -0.21 -4.46 8.66 -39.50 -0.34 -4.81 16 9 C 0.19 4.06 6.60 -38.96 -0.26 3.81 16 10 O -0.31 -7.19 9.00 -18.81 -0.17 -7.36 16 11 C 0.20 4.91 1.56 -29.03 -0.05 4.87 16 12 H 0.05 1.24 3.41 -51.93 -0.18 1.06 16 13 C -0.53 -14.37 8.23 -34.44 -0.28 -14.65 16 14 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 15 C 0.09 2.40 5.42 -17.82 -0.10 2.30 16 16 N -0.88 -25.42 13.96 55.43 0.77 -24.65 16 17 Si 0.85 19.98 23.54 -169.99 -4.00 15.98 16 18 H -0.26 -5.98 6.80 56.52 0.38 -5.59 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.26 -5.72 5.85 56.52 0.33 -5.39 16 21 C -0.04 -0.88 4.92 -104.62 -0.51 -1.40 16 22 C -0.10 -2.00 9.35 -39.58 -0.37 -2.37 16 23 C -0.12 -2.15 10.05 -39.58 -0.40 -2.54 16 24 C -0.14 -2.36 10.05 -39.58 -0.40 -2.76 16 25 C -0.12 -2.14 10.05 -39.58 -0.40 -2.54 16 26 C -0.13 -2.73 8.74 -39.58 -0.35 -3.08 16 27 C -0.18 -3.40 9.97 -39.50 -0.39 -3.80 16 28 C 0.00 -0.08 6.60 -39.12 -0.26 -0.34 16 29 H 0.07 0.44 7.92 -51.93 -0.41 0.03 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.13 0.95 7.99 -52.49 -0.42 0.53 16 33 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.12 1.81 8.06 -52.49 -0.42 1.38 16 35 H 0.14 3.16 4.51 -52.48 -0.24 2.92 16 36 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.12 2.48 7.69 -52.49 -0.40 2.07 16 38 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 39 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 40 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 41 H 0.11 2.26 5.19 -52.48 -0.27 1.98 16 42 H 0.12 2.11 8.06 -52.49 -0.42 1.69 16 43 H 0.11 1.63 6.92 -52.49 -0.36 1.27 16 LS Contribution 353.73 15.07 5.33 5.33 Total: -1.00 -31.30 353.73 -8.84 -40.14 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -5.31 Total: 9.88 kcal Atomic # 6 Polarization: -26.52 SS G_CDS: -5.53 Total: -32.05 kcal Atomic # 7 Polarization: -25.42 SS G_CDS: 0.77 Total: -24.65 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -0.10 Total: -14.64 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -4.00 Total: 15.98 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.30 -8.84 -40.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228497529.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.014 kcal (2) G-P(sol) polarization free energy of solvation -31.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds