Wall clock time and date at job start Tue Mar 31 2020 12:51:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21472 * 119.99948 * 2 1 4 4 C 1.40785 * 120.00262 * 180.02562 * 2 1 3 5 5 C 1.35558 * 120.00452 * 186.42003 * 4 2 1 6 6 C 1.46775 * 119.99452 * 11.40920 * 5 4 2 7 7 C 1.40096 * 120.11933 * 222.48888 * 6 5 4 8 8 C 1.37606 * 119.87382 * 180.02562 * 7 6 5 9 9 C 1.39067 * 120.12852 * 0.27623 * 8 7 6 10 10 O 1.35701 * 119.88083 * 179.69827 * 9 8 7 11 11 C 1.42895 * 116.99975 * 5.47134 * 10 9 8 12 12 H 1.09001 * 109.47528 * 35.66297 * 11 10 9 13 13 C 1.50703 * 109.46946 * 275.65746 * 11 10 9 14 14 H 1.07994 * 120.00166 * 329.91621 * 13 11 10 15 15 C 1.37879 * 119.99856 * 149.90813 * 13 11 10 16 16 N 1.31512 * 120.00246 * 179.85171 * 15 13 11 17 17 Si 1.86801 * 119.99921 * 359.85845 * 15 13 11 18 18 H 1.48498 * 109.47458 * 88.81414 * 17 15 13 19 19 H 1.48504 * 109.47034 * 208.81537 * 17 15 13 20 20 H 1.48505 * 109.47051 * 328.81189 * 17 15 13 21 21 C 1.50704 * 109.47381 * 155.66486 * 11 10 9 22 22 C 1.38241 * 120.00037 * 37.18025 * 21 11 10 23 23 C 1.38234 * 119.99829 * 179.79055 * 22 21 11 24 24 C 1.38233 * 120.00011 * 0.44735 * 23 22 21 25 25 C 1.38237 * 120.00138 * 359.81062 * 24 23 22 26 26 C 1.38231 * 119.99950 * 359.97438 * 25 24 23 27 27 C 1.39078 * 120.23929 * 359.45125 * 9 8 7 28 28 C 1.37604 * 120.12148 * 0.54861 * 27 9 8 29 29 H 1.09003 * 109.47228 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47209 * 299.99978 * 1 2 3 31 31 H 1.09001 * 109.47122 * 60.00079 * 1 2 3 32 32 H 1.08002 * 119.99906 * 6.41759 * 4 2 1 33 33 H 1.07998 * 120.00142 * 191.40765 * 5 4 2 34 34 H 1.08001 * 120.06043 * 0.05003 * 7 6 5 35 35 H 1.08007 * 119.93600 * 180.02562 * 8 7 6 36 36 H 0.97002 * 119.99930 * 180.02562 * 16 15 13 37 37 H 1.07999 * 119.99750 * 0.02562 * 22 21 11 38 38 H 1.08001 * 119.99950 * 180.27367 * 23 22 21 39 39 H 1.07997 * 120.00194 * 179.83442 * 24 23 22 40 40 H 1.07997 * 120.00105 * 180.02562 * 25 24 23 41 41 H 1.08004 * 120.00272 * 180.02562 * 26 25 24 42 42 H 1.07998 * 119.93491 * 180.25662 * 27 9 8 43 43 H 1.07997 * 120.06026 * 179.71060 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1143 1.0520 0.0000 4 6 2.2109 -1.2192 -0.0005 5 6 3.5602 -1.2230 0.1307 6 6 4.2628 0.0049 0.5219 7 6 5.4566 0.3655 -0.1165 8 6 6.1114 1.5174 0.2546 9 6 5.5934 2.3202 1.2652 10 8 6.2465 3.4519 1.6313 11 6 7.3906 3.8196 0.8583 12 1 7.2212 3.5614 -0.1871 13 6 8.6005 3.0800 1.3687 14 1 8.6651 2.8046 2.4109 15 6 9.6249 2.7549 0.5050 16 7 10.6820 2.1121 0.9509 17 14 9.5112 3.2277 -1.2987 18 1 10.0795 4.5861 -1.4912 19 1 10.2757 2.2510 -2.1155 20 1 8.0882 3.2216 -1.7233 21 6 7.6220 5.3039 0.9779 22 6 7.3943 5.9441 2.1818 23 6 7.6107 7.3049 2.2927 24 6 8.0458 8.0271 1.1973 25 6 8.2683 7.3879 -0.0080 26 6 8.0562 6.0264 -0.1178 27 6 4.4057 1.9700 1.8984 28 6 3.7425 0.8202 1.5353 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6760 -2.1516 -0.1055 33 1 4.1180 -2.1294 -0.0525 34 1 5.8619 -0.2593 -0.8986 35 1 7.0316 1.7966 -0.2372 36 1 11.4028 1.8838 0.3433 37 1 7.0511 5.3804 3.0367 38 1 7.4371 7.8043 3.2345 39 1 8.2122 9.0907 1.2832 40 1 8.6086 7.9520 -0.8637 41 1 8.2305 5.5268 -1.0593 42 1 4.0056 2.5991 2.6797 43 1 2.8227 0.5468 2.0309 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228497529.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:00 Heat of formation + Delta-G solvation = -3.753261 kcal Electronic energy + Delta-G solvation = -26243.998011 eV Core-core repulsion = 22606.049744 eV Total energy + Delta-G solvation = -3637.948268 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.39698 -40.70094 -39.74132 -38.10615 -35.21711 -34.40161 -33.01407 -31.95897 -31.79439 -31.49122 -29.33525 -29.07098 -25.45372 -24.35066 -23.73839 -23.44785 -22.48287 -21.61897 -19.69032 -19.38802 -19.00449 -17.94419 -17.37226 -16.87083 -16.78564 -16.23430 -16.15870 -15.85969 -15.47988 -15.35789 -15.15804 -14.95062 -14.58135 -14.50540 -14.28321 -14.16119 -14.09778 -13.78354 -13.42386 -13.27044 -12.94438 -12.88514 -12.74284 -12.65519 -12.33608 -12.15556 -11.98560 -11.82408 -11.57603 -11.35216 -10.95364 -10.55368 -10.47099 -9.79103 -9.75432 -9.52597 -8.56840 -8.49563 -6.57262 -0.39087 0.48652 0.51836 0.54687 0.88214 1.16687 1.18165 1.25812 2.11996 2.16088 2.45605 2.82458 2.93785 3.02084 3.57263 3.87576 3.92451 3.94934 3.99049 4.11702 4.19753 4.27368 4.31564 4.40705 4.43252 4.51836 4.65445 4.69088 4.73422 4.73483 4.78196 4.80042 5.06668 5.08566 5.12796 5.18606 5.19030 5.22658 5.36747 5.52419 5.56138 5.59927 5.65082 5.71433 5.76323 5.87608 6.06127 6.16479 6.42334 6.67836 6.85504 7.09695 8.66807 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.014182 B = 0.003876 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.802761 B = 7222.520063 C = 8327.134231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.358 3.642 3 O -0.498 6.498 4 C -0.256 4.256 5 C 0.008 3.992 6 C -0.140 4.140 7 C -0.066 4.066 8 C -0.234 4.234 9 C 0.142 3.858 10 O -0.326 6.326 11 C 0.217 3.783 12 H 0.045 0.955 13 C -0.529 4.529 14 H 0.037 0.963 15 C 0.041 3.959 16 N -0.925 5.925 17 Si 0.907 3.093 18 H -0.245 1.245 19 H -0.274 1.274 20 H -0.247 1.247 21 C -0.074 4.074 22 C -0.121 4.121 23 C -0.118 4.118 24 C -0.130 4.130 25 C -0.118 4.118 26 C -0.154 4.154 27 C -0.188 4.188 28 C -0.003 4.003 29 H 0.107 0.893 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.176 0.824 33 H 0.161 0.839 34 H 0.141 0.859 35 H 0.112 0.888 36 H 0.273 0.727 37 H 0.108 0.892 38 H 0.149 0.851 39 H 0.159 0.841 40 H 0.150 0.850 41 H 0.105 0.895 42 H 0.131 0.869 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.292 -2.270 -3.898 17.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.242 3.758 3 O -0.380 6.380 4 C -0.274 4.274 5 C -0.010 4.010 6 C -0.140 4.140 7 C -0.084 4.084 8 C -0.252 4.252 9 C 0.096 3.904 10 O -0.240 6.240 11 C 0.161 3.839 12 H 0.062 0.938 13 C -0.566 4.566 14 H 0.055 0.945 15 C -0.160 4.160 16 N -0.563 5.563 17 Si 0.730 3.270 18 H -0.169 1.169 19 H -0.199 1.199 20 H -0.171 1.171 21 C -0.075 4.075 22 C -0.139 4.139 23 C -0.136 4.136 24 C -0.147 4.147 25 C -0.136 4.136 26 C -0.172 4.172 27 C -0.207 4.207 28 C -0.021 4.021 29 H 0.126 0.874 30 H 0.109 0.891 31 H 0.106 0.894 32 H 0.193 0.807 33 H 0.179 0.821 34 H 0.159 0.841 35 H 0.130 0.870 36 H 0.083 0.917 37 H 0.127 0.873 38 H 0.167 0.833 39 H 0.177 0.823 40 H 0.167 0.833 41 H 0.123 0.877 42 H 0.149 0.851 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -16.848 -1.675 -3.782 17.348 hybrid contribution 0.906 -0.227 -0.637 1.131 sum -15.941 -1.902 -4.419 16.651 Atomic orbital electron populations 1.22212 0.92291 1.06077 1.04458 1.21804 0.93678 0.89061 0.71221 1.90766 1.72192 1.36908 1.38127 1.22888 0.94891 1.00644 1.08996 1.22958 0.94889 0.95713 0.87473 1.19084 0.96365 0.98449 1.00087 1.21232 0.93494 0.95098 0.98558 1.21318 1.02594 0.99042 1.02291 1.19541 0.91554 0.86355 0.92958 1.85842 1.42289 1.39203 1.56647 1.19368 0.82832 0.89927 0.91725 0.93794 1.21202 1.02661 1.36335 0.96449 0.94517 1.25572 0.94293 0.93428 1.02686 1.69986 1.08687 1.39964 1.37670 0.86457 0.79819 0.80185 0.80489 1.16945 1.19906 1.17133 1.20170 0.98146 0.94153 0.95014 1.20995 1.00568 0.95672 0.96663 1.21464 0.98926 0.93010 1.00204 1.21457 0.99815 1.01252 0.92199 1.21367 0.99624 0.93089 0.99515 1.21061 1.02831 0.95826 0.97478 1.20410 0.94981 1.00695 1.04565 1.20921 0.95905 0.91181 0.94136 0.87441 0.89090 0.89435 0.80694 0.82114 0.84133 0.87033 0.91707 0.87339 0.83329 0.82331 0.83256 0.87682 0.85128 0.84710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.42 10.30 71.23 0.73 -1.69 16 2 C 0.36 7.54 6.04 26.31 0.16 7.70 16 3 O -0.50 -15.83 12.65 -3.63 -0.05 -15.88 16 4 C -0.26 -4.26 9.52 22.27 0.21 -4.04 16 5 C 0.01 0.17 9.81 23.88 0.23 0.40 16 6 C -0.14 -4.46 4.54 -20.14 -0.09 -4.55 16 7 C -0.07 -2.44 9.79 22.57 0.22 -2.22 16 8 C -0.23 -10.70 8.66 22.32 0.19 -10.51 16 9 C 0.14 6.68 6.60 22.67 0.15 6.83 16 10 O -0.33 -16.62 9.00 -90.21 -0.81 -17.43 16 11 C 0.22 11.22 1.56 29.10 0.05 11.27 16 12 H 0.04 2.30 3.41 -2.39 -0.01 2.29 16 13 C -0.53 -31.39 8.23 25.60 0.21 -31.18 16 14 H 0.04 2.47 8.06 -2.91 -0.02 2.45 16 15 C 0.04 2.39 5.42 84.66 0.46 2.85 16 16 N -0.93 -57.16 13.96 21.45 0.30 -56.86 16 17 Si 0.91 43.14 23.54 68.60 1.61 44.75 16 18 H -0.25 -10.93 6.80 99.48 0.68 -10.26 16 19 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 20 H -0.25 -11.19 5.85 99.48 0.58 -10.60 16 21 C -0.07 -3.48 4.92 -19.86 -0.10 -3.58 16 22 C -0.12 -5.12 9.35 22.27 0.21 -4.92 16 23 C -0.12 -3.92 10.05 22.27 0.22 -3.69 16 24 C -0.13 -3.82 10.05 22.27 0.22 -3.60 16 25 C -0.12 -3.91 10.05 22.27 0.22 -3.68 16 26 C -0.15 -6.42 8.74 22.27 0.19 -6.23 16 27 C -0.19 -7.50 9.97 22.32 0.22 -7.28 16 28 C 0.00 -0.12 6.60 22.57 0.15 0.03 16 29 H 0.11 0.65 7.92 -2.39 -0.02 0.63 16 30 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.18 1.36 7.99 -2.91 -0.02 1.34 16 33 H 0.16 2.36 8.06 -2.91 -0.02 2.33 16 34 H 0.14 4.35 8.06 -2.91 -0.02 4.33 16 35 H 0.11 5.59 4.51 -2.91 -0.01 5.57 16 36 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 37 H 0.11 4.75 7.69 -2.91 -0.02 4.73 16 38 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16 39 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 40 H 0.15 3.81 8.06 -2.91 -0.02 3.79 16 41 H 0.11 4.36 5.19 -2.91 -0.02 4.34 16 42 H 0.13 4.79 8.06 -2.91 -0.02 4.77 16 43 H 0.14 3.80 6.92 -2.91 -0.02 3.78 16 Total: -1.00 -77.57 353.73 5.80 -71.77 By element: Atomic # 1 Polarization: 30.88 SS G_CDS: 0.87 Total: 31.75 kcal Atomic # 6 Polarization: -61.98 SS G_CDS: 3.87 Total: -58.10 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: 0.30 Total: -56.86 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -0.86 Total: -33.31 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 1.61 Total: 44.75 kcal Total: -77.57 5.80 -71.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228497529.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.017 kcal (2) G-P(sol) polarization free energy of solvation -77.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds