Wall clock time and date at job start Tue Mar 31 2020 12:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.21463 * 119.99588 * 2 1 4 4 C 1.40781 * 119.99833 * 180.02562 * 2 1 3 5 5 C 1.35561 * 119.99880 * 180.02562 * 4 2 1 6 6 C 1.46780 * 120.00235 * 180.27370 * 5 4 2 7 7 C 1.40095 * 120.11704 * 359.44536 * 6 5 4 8 8 C 1.37607 * 119.86976 * 179.76751 * 7 6 5 9 9 C 1.39066 * 120.12680 * 0.49029 * 8 7 6 10 10 O 1.35702 * 119.88041 * 179.76466 * 9 8 7 11 11 C 1.42903 * 117.00055 * 174.64394 * 10 9 8 12 12 H 1.08994 * 109.47144 * 324.11415 * 11 10 9 13 13 C 1.50698 * 109.47035 * 84.11571 * 11 10 9 14 14 H 1.07993 * 120.00448 * 240.00044 * 13 11 10 15 15 C 1.37881 * 119.99891 * 59.99649 * 13 11 10 16 16 N 1.31514 * 120.00177 * 0.02562 * 15 13 11 17 17 Si 1.86805 * 119.99907 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47198 * 0.02562 * 17 15 13 19 19 H 1.48494 * 109.47094 * 120.00373 * 17 15 13 20 20 H 1.48503 * 109.47208 * 240.00055 * 17 15 13 21 21 C 1.50698 * 109.46934 * 204.11413 * 11 10 9 22 22 C 1.38237 * 120.00064 * 324.72722 * 21 11 10 23 23 C 1.38239 * 119.99544 * 179.78896 * 22 21 11 24 24 C 1.38234 * 120.00527 * 0.44177 * 23 22 21 25 25 C 1.38232 * 119.99485 * 359.81233 * 24 23 22 26 26 C 1.38236 * 120.00447 * 359.97438 * 25 24 23 27 27 C 1.39066 * 120.24164 * 359.77933 * 9 8 7 28 28 C 1.37609 * 120.12524 * 359.96289 * 27 9 8 29 29 H 1.08998 * 109.46720 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46793 * 299.99889 * 1 2 3 31 31 H 1.09008 * 109.47167 * 59.99736 * 1 2 3 32 32 H 1.07996 * 120.00639 * 359.97438 * 4 2 1 33 33 H 1.08001 * 119.99932 * 359.97438 * 5 4 2 34 34 H 1.07994 * 120.06229 * 359.97438 * 7 6 5 35 35 H 1.08003 * 119.93227 * 180.22772 * 8 7 6 36 36 H 0.97006 * 119.99928 * 179.97438 * 16 15 13 37 37 H 1.07997 * 120.00102 * 359.97438 * 22 21 11 38 38 H 1.08006 * 120.00036 * 180.27370 * 23 22 21 39 39 H 1.07999 * 120.00200 * 179.83411 * 24 23 22 40 40 H 1.08004 * 120.00235 * 179.97438 * 25 24 23 41 41 H 1.07999 * 120.00133 * 180.02562 * 26 25 24 42 42 H 1.08001 * 119.93934 * 179.97438 * 27 9 8 43 43 H 1.07999 * 120.06370 * 179.97438 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1143 1.0519 0.0000 4 6 2.2109 -1.2192 -0.0005 5 6 3.5666 -1.2192 0.0000 6 6 4.3005 -2.4903 -0.0067 7 6 3.6026 -3.7051 -0.0018 8 6 4.2958 -4.8937 -0.0129 9 6 5.6864 -4.8908 -0.0186 10 8 6.3649 -6.0660 -0.0248 11 6 7.7867 -5.9936 -0.1493 12 1 8.0518 -5.1709 -0.8132 13 6 8.3986 -5.7608 1.2081 14 1 8.9934 -4.8776 1.3881 15 6 8.1989 -6.6755 2.2203 16 7 7.4749 -7.7513 2.0012 17 14 8.9580 -6.3873 3.9027 18 1 9.7212 -5.1135 3.8898 19 1 7.8829 -6.3094 4.9240 20 1 9.8729 -7.5098 4.2318 21 6 8.3075 -7.2875 -0.7198 22 6 7.7033 -8.4843 -0.3828 23 6 8.1783 -9.6707 -0.9097 24 6 9.2632 -9.6614 -1.7664 25 6 9.8706 -8.4651 -2.0992 26 6 9.3929 -7.2781 -1.5758 27 6 6.3843 -3.6879 -0.0178 28 6 5.7013 -2.4932 -0.0121 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.6710 -2.1545 -0.0005 33 1 4.1066 -0.2839 0.0004 34 1 2.5227 -3.7085 0.0072 35 1 3.7587 -5.8308 -0.0129 36 1 7.3348 -8.3950 2.7132 37 1 6.8583 -8.4921 0.2897 38 1 7.7036 -10.6054 -0.6499 39 1 9.6360 -10.5886 -2.1759 40 1 10.7185 -8.4576 -2.7681 41 1 9.8672 -6.3435 -1.8362 42 1 7.4643 -3.6913 -0.0218 43 1 6.2443 -1.5597 -0.0110 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228497530.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:03 Heat of formation + Delta-G solvation = -2.861470 kcal Electronic energy + Delta-G solvation = -25558.879656 eV Core-core repulsion = 21920.970059 eV Total energy + Delta-G solvation = -3637.909597 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.136 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.69378 -39.27107 -38.22742 -36.78695 -33.66045 -32.91402 -31.03936 -30.54755 -30.46973 -29.79966 -28.09726 -27.16318 -24.05049 -23.06470 -22.36815 -21.56023 -20.68952 -20.15263 -18.66976 -17.82794 -16.55152 -16.29120 -16.04766 -15.43391 -15.13046 -14.88624 -14.75303 -14.51036 -14.10481 -13.88938 -13.78387 -13.50599 -13.12246 -12.72002 -12.60384 -12.47570 -12.38044 -12.22165 -12.15578 -11.69947 -11.63590 -11.53110 -11.36687 -11.12416 -10.77716 -10.60292 -10.38807 -10.21746 -9.80731 -9.70099 -9.50240 -9.13221 -8.95230 -8.62726 -7.94484 -7.65920 -7.18210 -6.21110 -4.57476 0.58895 1.83406 2.16013 2.30179 2.46966 3.11629 3.18010 3.20992 3.23344 4.14452 4.22260 4.32493 4.34981 4.85473 4.96497 4.99575 5.03209 5.22100 5.26910 5.32438 5.41091 5.50285 5.69290 5.73351 5.77782 5.82432 5.86737 5.89046 6.06432 6.15019 6.29141 6.35324 6.36542 6.42930 6.55144 6.69918 6.77266 6.89328 6.94830 6.97836 7.11664 7.25719 7.36172 7.44552 7.60674 7.68672 7.74332 7.86103 8.11086 8.31436 8.66167 9.20194 10.62100 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015762 B = 0.002967 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.021327 B = 9433.473371 C =10309.528784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.384 3.616 3 O -0.492 6.492 4 C -0.302 4.302 5 C 0.045 3.955 6 C -0.175 4.175 7 C -0.047 4.047 8 C -0.185 4.185 9 C 0.206 3.794 10 O -0.287 6.287 11 C 0.237 3.763 12 H 0.037 0.963 13 C -0.546 4.546 14 H 0.069 0.931 15 C 0.085 3.915 16 N -0.845 5.845 17 Si 0.897 3.103 18 H -0.270 1.270 19 H -0.279 1.279 20 H -0.280 1.280 21 C -0.047 4.047 22 C -0.046 4.046 23 C -0.151 4.151 24 C -0.142 4.142 25 C -0.148 4.148 26 C -0.124 4.124 27 C -0.215 4.215 28 C -0.044 4.044 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.266 0.734 37 H 0.164 0.836 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.139 0.861 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.977 4.011 -4.793 9.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.269 3.731 3 O -0.374 6.374 4 C -0.320 4.320 5 C 0.026 3.974 6 C -0.176 4.176 7 C -0.065 4.065 8 C -0.204 4.204 9 C 0.156 3.844 10 O -0.197 6.197 11 C 0.184 3.816 12 H 0.055 0.945 13 C -0.582 4.582 14 H 0.088 0.912 15 C -0.123 4.123 16 N -0.479 5.479 17 Si 0.724 3.276 18 H -0.194 1.194 19 H -0.205 1.205 20 H -0.206 1.206 21 C -0.047 4.047 22 C -0.065 4.065 23 C -0.170 4.170 24 C -0.160 4.160 25 C -0.166 4.166 26 C -0.142 4.142 27 C -0.234 4.234 28 C -0.062 4.062 29 H 0.096 0.904 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.145 0.855 36 H 0.077 0.923 37 H 0.181 0.819 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.157 0.843 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.793 4.144 -4.680 9.232 hybrid contribution 0.732 -0.090 1.141 1.358 sum -6.062 4.054 -3.539 8.106 Atomic orbital electron populations 1.22172 0.95138 1.04136 1.04070 1.20907 0.91816 0.88748 0.71637 1.90568 1.72059 1.35329 1.39398 1.22322 0.95651 0.99456 1.14614 1.22766 0.94312 0.96762 0.83544 1.18720 0.93326 0.92353 1.13176 1.21067 0.99063 0.91023 0.95372 1.20386 0.91699 0.98583 1.09743 1.19447 0.91515 0.86529 0.86956 1.86255 1.24237 1.26331 1.82887 1.19075 0.75610 0.91315 0.95623 0.94473 1.21407 1.34066 1.08149 0.94581 0.91241 1.25031 0.93841 0.94063 0.99331 1.69808 1.36203 1.09824 1.32066 0.86448 0.79207 0.78645 0.83324 1.19432 1.20520 1.20582 1.19749 0.95382 0.95907 0.93680 1.21873 1.01102 0.90159 0.93397 1.21161 0.98101 0.98381 0.99330 1.20870 0.97796 0.96911 1.00406 1.20721 1.00688 0.92890 1.02314 1.20749 0.97602 0.97373 0.98525 1.21400 1.01442 0.91745 1.08816 1.21147 0.92718 0.97728 0.94590 0.90358 0.89587 0.89600 0.85381 0.85517 0.85758 0.85454 0.92304 0.81863 0.87798 0.88032 0.87725 0.87573 0.84308 0.86155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.65 10.30 36.01 0.37 -1.28 16 2 C 0.38 4.69 7.00 -33.34 -0.23 4.46 16 3 O -0.49 -7.75 16.84 5.40 0.09 -7.66 16 4 C -0.30 -3.61 9.01 -39.58 -0.36 -3.96 16 5 C 0.04 0.60 9.41 -37.09 -0.35 0.25 16 6 C -0.18 -2.61 5.87 -105.06 -0.62 -3.22 16 7 C -0.05 -0.70 9.41 -39.12 -0.37 -1.06 16 8 C -0.19 -3.18 9.96 -39.50 -0.39 -3.58 16 9 C 0.21 4.08 6.60 -38.97 -0.26 3.82 16 10 O -0.29 -6.45 8.34 -18.81 -0.16 -6.61 16 11 C 0.24 5.33 2.11 -29.04 -0.06 5.27 16 12 H 0.04 0.79 6.26 -51.93 -0.32 0.46 16 13 C -0.55 -13.29 7.90 -34.44 -0.27 -13.57 16 14 H 0.07 1.68 7.81 -52.49 -0.41 1.27 16 15 C 0.08 2.09 5.24 -17.82 -0.09 2.00 16 16 N -0.84 -21.06 8.50 55.43 0.47 -20.59 16 17 Si 0.90 19.72 29.54 -169.99 -5.02 14.70 16 18 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 19 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 20 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 21 C -0.05 -1.04 4.80 -104.62 -0.50 -1.54 16 22 C -0.05 -1.03 7.46 -39.58 -0.30 -1.33 16 23 C -0.15 -2.97 10.05 -39.58 -0.40 -3.37 16 24 C -0.14 -2.56 10.05 -39.58 -0.40 -2.96 16 25 C -0.15 -2.68 10.05 -39.58 -0.40 -3.08 16 26 C -0.12 -2.48 9.68 -39.58 -0.38 -2.86 16 27 C -0.22 -3.93 8.66 -39.50 -0.34 -4.27 16 28 C -0.04 -0.68 9.79 -39.12 -0.38 -1.07 16 29 H 0.08 0.51 7.91 -51.93 -0.41 0.10 16 30 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.09 0.64 8.14 -51.92 -0.42 0.22 16 32 H 0.13 1.28 6.00 -52.49 -0.31 0.97 16 33 H 0.13 1.66 7.45 -52.49 -0.39 1.27 16 34 H 0.12 1.45 6.16 -52.49 -0.32 1.13 16 35 H 0.13 2.05 8.06 -52.48 -0.42 1.63 16 36 H 0.27 6.40 8.31 -40.82 -0.34 6.06 16 37 H 0.16 3.92 5.50 -52.49 -0.29 3.63 16 38 H 0.10 1.81 8.06 -52.48 -0.42 1.39 16 39 H 0.10 1.54 8.06 -52.49 -0.42 1.12 16 40 H 0.10 1.59 8.06 -52.48 -0.42 1.17 16 41 H 0.11 1.91 8.06 -52.49 -0.42 1.49 16 42 H 0.14 2.59 5.64 -52.49 -0.30 2.29 16 43 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 363.55 15.07 5.48 5.48 Total: -1.00 -27.38 363.55 -10.14 -37.52 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -5.28 Total: 8.50 kcal Atomic # 6 Polarization: -25.61 SS G_CDS: -5.73 Total: -31.34 kcal Atomic # 7 Polarization: -21.06 SS G_CDS: 0.47 Total: -20.59 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -0.07 Total: -14.27 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -27.38 -10.14 -37.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228497530.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.658 kcal (2) G-P(sol) polarization free energy of solvation -27.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds