Wall clock time and date at job start Tue Mar 31 2020 13:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46895 * 109.47157 * 2 1 4 4 C 1.46901 * 109.47567 * 239.99351 * 2 1 3 5 5 C 1.46903 * 109.46807 * 119.99703 * 2 1 3 6 6 C 1.53003 * 109.47073 * 65.90824 * 5 2 1 7 7 H 1.08993 * 109.47308 * 54.90961 * 6 5 2 8 8 C 1.50700 * 109.46858 * 174.91089 * 6 5 2 9 9 H 1.07996 * 120.00109 * 120.00137 * 8 6 5 10 10 C 1.37881 * 119.99997 * 299.99235 * 8 6 5 11 11 N 1.31510 * 120.00159 * 0.02562 * 10 8 6 12 12 Si 1.86802 * 119.99795 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47297 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46657 * 120.00474 * 12 10 8 15 15 H 1.48502 * 109.47092 * 240.00041 * 12 10 8 16 16 O 1.42901 * 109.47092 * 294.90592 * 6 5 2 17 17 C 1.35990 * 116.99734 * 154.22766 * 16 6 5 18 18 C 1.39120 * 119.84577 * 1.96880 * 17 16 6 19 19 C 1.37659 * 120.44377 * 180.29688 * 18 17 16 20 20 C 1.39700 * 119.85252 * 359.45143 * 19 18 17 21 21 N 1.36029 * 133.30562 * 180.19235 * 20 19 18 22 22 C 1.30988 * 109.61106 * 180.32191 * 21 20 19 23 23 S 1.76197 * 125.07726 * 179.97438 * 22 21 20 24 24 N 1.36704 * 109.84151 * 359.97438 * 22 21 20 25 25 H 0.97003 * 126.37150 * 180.02562 * 24 22 21 26 26 C 1.38523 * 107.24779 * 0.02562 * 24 22 21 27 27 C 1.38384 * 119.84040 * 181.98855 * 17 16 6 28 28 H 1.08994 * 109.47721 * 292.20747 * 1 2 3 29 29 H 1.09006 * 109.46541 * 52.20817 * 1 2 3 30 30 H 1.09006 * 109.47284 * 172.20106 * 1 2 3 31 31 H 1.09006 * 109.46892 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.46877 * 299.99313 * 3 2 1 33 33 H 1.08996 * 109.47345 * 59.99869 * 3 2 1 34 34 H 1.08998 * 109.47199 * 309.28699 * 4 2 1 35 35 H 1.09007 * 109.46687 * 69.28113 * 4 2 1 36 36 H 1.08992 * 109.47243 * 189.27968 * 4 2 1 37 37 H 1.08997 * 109.47391 * 305.90250 * 5 2 1 38 38 H 1.09004 * 109.46958 * 185.90374 * 5 2 1 39 39 H 0.96994 * 120.00534 * 179.97438 * 11 10 8 40 40 H 1.08000 * 119.77250 * 0.02562 * 18 17 16 41 41 H 1.08007 * 120.07290 * 179.72776 * 19 18 17 42 42 H 1.41009 * 99.99672 * 90.02391 * 23 22 21 43 43 H 1.08007 * 120.09330 * 359.95725 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9586 1.3849 0.0000 4 6 1.9587 -0.6926 -1.1993 5 6 1.9586 -0.6925 1.1995 6 6 1.5734 -2.1715 1.1275 7 1 1.9442 -2.5986 0.1959 8 6 2.1816 -2.9063 2.2942 9 1 1.5454 -3.4173 3.0016 10 6 3.5505 -2.9263 2.4584 11 7 4.3253 -2.3037 1.5972 12 14 4.3045 -3.8377 3.9042 13 1 3.2256 -4.4507 4.7200 14 1 5.2093 -4.9022 3.4007 15 1 5.0780 -2.8853 4.7408 16 8 0.1506 -2.2960 1.1757 17 6 -0.3918 -3.4040 0.6035 18 6 0.4375 -4.3709 0.0442 19 6 -0.0986 -5.4944 -0.5436 20 6 -1.4840 -5.6718 -0.5694 21 7 -2.2902 -6.6512 -1.0605 22 6 -3.5434 -6.3425 -0.8368 23 16 -4.9278 -7.3268 -1.3048 24 7 -3.6165 -5.1426 -0.1858 25 1 -4.4266 -4.6896 0.0960 26 6 -2.3186 -4.6943 -0.0038 27 6 -1.7661 -3.5642 0.5800 28 1 -0.3634 0.3884 0.9513 29 1 -0.3632 0.6298 -0.8122 30 1 -0.3634 -1.0182 -0.1395 31 1 3.0487 1.3849 0.0005 32 1 1.5954 1.8987 -0.8901 33 1 1.5953 1.8988 0.8899 34 1 1.4664 -1.6612 -1.2861 35 1 1.7371 -0.0921 -2.0816 36 1 3.0360 -0.8383 -1.1203 37 1 1.5115 -0.2433 2.0863 38 1 3.0435 -0.6018 1.2540 39 1 5.2882 -2.3174 1.7129 40 1 1.5089 -4.2370 0.0675 41 1 0.5507 -6.2391 -0.9799 42 1 -5.0648 -8.1221 -0.1485 43 1 -2.4066 -2.8115 1.0156 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229630619.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:02 Heat of formation + Delta-G solvation = 146.594621 kcal Electronic energy + Delta-G solvation = -25857.072007 eV Core-core repulsion = 22341.609843 eV Total energy + Delta-G solvation = -3515.462164 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.133 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.41647 -42.85220 -40.24214 -36.94911 -35.02029 -34.03756 -31.81257 -30.83454 -30.38550 -30.29307 -29.38544 -27.87628 -25.18530 -24.57147 -23.81233 -22.54172 -22.16597 -19.66820 -19.27000 -19.17961 -18.50206 -18.34631 -17.93829 -17.81463 -17.18414 -16.55743 -16.38128 -15.87311 -15.56543 -15.18652 -14.93875 -14.90231 -14.80286 -14.41801 -14.21004 -13.99737 -13.97102 -13.82844 -13.62073 -13.45242 -13.28728 -12.97658 -12.67588 -12.31415 -12.21479 -12.00772 -11.85801 -11.55520 -11.44870 -11.00086 -10.76098 -10.20711 -9.47396 -9.34107 -8.69363 -7.96702 -6.08049 -0.22663 0.11632 0.30587 0.56711 1.13320 1.79797 1.92943 2.04295 2.21752 2.22095 2.27084 2.33747 2.35312 2.59981 2.90560 2.94770 3.17664 3.22185 3.40090 3.43373 3.49410 3.61097 3.64250 3.68470 3.76087 3.95479 3.97727 4.02746 4.09495 4.14546 4.18826 4.33951 4.45371 4.51435 4.69929 4.97640 5.13890 5.24506 5.38554 5.53110 5.76044 5.98503 6.14699 6.15971 6.46069 6.72897 7.13334 7.71572 9.08849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.270 5.270 3 C -0.041 4.041 4 C -0.041 4.041 5 C -0.008 4.008 6 C 0.196 3.804 7 H 0.060 0.940 8 C -0.544 4.544 9 H 0.083 0.917 10 C 0.077 3.923 11 N -0.895 5.895 12 Si 0.912 3.088 13 H -0.266 1.266 14 H -0.273 1.273 15 H -0.275 1.275 16 O -0.325 6.325 17 C 0.175 3.825 18 C -0.191 4.191 19 C -0.016 4.016 20 C 0.003 3.997 21 N -0.428 5.428 22 C 0.239 3.761 23 S -0.023 6.023 24 N -0.582 5.582 25 H 0.427 0.573 26 C 0.105 3.895 27 C -0.177 4.177 28 H 0.113 0.887 29 H 0.101 0.899 30 H 0.133 0.867 31 H 0.117 0.883 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.107 0.893 36 H 0.126 0.874 37 H 0.112 0.888 38 H 0.167 0.833 39 H 0.282 0.718 40 H 0.155 0.845 41 H 0.136 0.864 42 H 0.109 0.891 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.203 13.152 -6.836 16.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 N 0.072 4.928 3 C -0.183 4.183 4 C -0.182 4.182 5 C -0.127 4.127 6 C 0.141 3.859 7 H 0.077 0.923 8 C -0.581 4.581 9 H 0.101 0.899 10 C -0.129 4.129 11 N -0.532 5.532 12 Si 0.737 3.263 13 H -0.190 1.190 14 H -0.198 1.198 15 H -0.200 1.200 16 O -0.239 6.239 17 C 0.127 3.873 18 C -0.212 4.212 19 C -0.036 4.036 20 C -0.118 4.118 21 N -0.149 5.149 22 C -0.136 4.136 23 S 0.130 5.870 24 N -0.198 5.198 25 H 0.267 0.733 26 C -0.009 4.009 27 C -0.200 4.200 28 H 0.132 0.868 29 H 0.120 0.880 30 H 0.151 0.849 31 H 0.136 0.864 32 H 0.128 0.872 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.126 0.874 36 H 0.144 0.856 37 H 0.131 0.869 38 H 0.184 0.816 39 H 0.092 0.908 40 H 0.172 0.828 41 H 0.154 0.846 42 H 0.073 0.927 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.467 12.182 -7.650 15.772 hybrid contribution 0.690 0.420 2.435 2.565 sum -5.777 12.602 -5.215 14.812 Atomic orbital electron populations 1.24363 0.77174 1.09952 1.07392 1.46302 1.14908 1.14580 1.17019 1.24015 1.05505 0.80986 1.07767 1.24059 1.06340 1.01491 0.86350 1.25089 1.07757 0.95600 0.84226 1.20589 0.74379 0.89715 1.01198 0.92334 1.21417 0.92182 1.33502 1.11038 0.89867 1.24952 0.96582 0.94290 0.97059 1.69483 1.06536 1.41572 1.35563 0.86116 0.79564 0.79832 0.80739 1.18986 1.19787 1.19984 1.85946 1.25855 1.38174 1.73973 1.18318 0.90912 0.86866 0.91201 1.21398 1.01610 0.95041 1.03146 1.20247 0.90955 0.96628 0.95731 1.19110 0.94312 0.93191 1.05154 1.71116 0.98793 1.25867 1.19168 1.24340 0.97000 0.89715 1.02570 1.87259 1.29297 1.43926 1.26544 1.43596 1.07312 1.19286 1.49632 0.73302 1.18476 0.84380 0.96811 1.01234 1.18775 0.92490 0.98659 1.10052 0.86827 0.88012 0.84931 0.86432 0.87235 0.86871 0.86691 0.87425 0.85553 0.86937 0.81570 0.90755 0.82786 0.84570 0.92658 0.85239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 0.48 7.26 60.06 0.44 0.91 16 2 N -0.27 2.61 0.05 -395.62 -0.02 2.59 16 3 C -0.04 0.50 7.97 60.06 0.48 0.98 16 4 C -0.04 0.39 7.35 60.07 0.44 0.83 16 5 C -0.01 0.03 3.68 -3.82 -0.01 0.02 16 6 C 0.20 0.05 1.16 -27.88 -0.03 0.02 16 7 H 0.06 0.00 4.04 -51.93 -0.21 -0.20 16 8 C -0.54 -3.34 8.22 -34.44 -0.28 -3.63 16 9 H 0.08 0.73 7.81 -52.49 -0.41 0.32 16 10 C 0.08 0.57 5.29 -17.82 -0.09 0.48 16 11 N -0.89 -5.96 11.29 55.43 0.63 -5.33 16 12 Si 0.91 7.47 29.54 -169.99 -5.02 2.45 16 13 H -0.27 -2.46 7.11 56.52 0.40 -2.06 16 14 H -0.27 -2.56 7.11 56.52 0.40 -2.16 16 15 H -0.27 -2.41 7.11 56.52 0.40 -2.01 16 16 O -0.33 0.15 6.69 -19.71 -0.13 0.02 16 17 C 0.17 0.16 6.09 -39.20 -0.24 -0.08 16 18 C -0.19 -0.38 8.76 -39.47 -0.35 -0.72 16 19 C -0.02 -0.05 10.09 -39.25 -0.40 -0.44 16 20 C 0.00 0.01 7.22 -84.63 -0.61 -0.60 16 21 N -0.43 -2.29 11.32 -10.88 -0.12 -2.41 16 22 C 0.24 0.66 8.44 -88.43 -0.75 -0.09 16 23 S -0.02 -0.01 26.28 -107.50 -2.83 -2.83 16 24 N -0.58 -0.44 6.28 -10.57 -0.07 -0.51 16 25 H 0.43 -1.09 8.96 -40.82 -0.37 -1.46 16 26 C 0.10 0.24 7.29 -83.86 -0.61 -0.37 16 27 C -0.18 -0.11 10.00 -39.37 -0.39 -0.50 16 28 H 0.11 -1.15 7.95 -51.93 -0.41 -1.57 16 29 H 0.10 -1.28 8.04 -51.93 -0.42 -1.69 16 30 H 0.13 -1.02 4.90 -51.93 -0.25 -1.28 16 31 H 0.12 -1.38 8.10 -51.93 -0.42 -1.80 16 32 H 0.11 -1.54 8.02 -51.93 -0.42 -1.96 16 33 H 0.11 -1.42 8.14 -51.93 -0.42 -1.85 16 34 H 0.11 -0.92 6.30 -51.93 -0.33 -1.25 16 35 H 0.11 -1.33 8.01 -51.92 -0.42 -1.74 16 36 H 0.13 -1.04 8.05 -51.93 -0.42 -1.46 16 37 H 0.11 -0.48 7.97 -51.93 -0.41 -0.90 16 38 H 0.17 -0.32 5.88 -51.93 -0.31 -0.62 16 39 H 0.28 2.08 8.31 -40.82 -0.34 1.74 16 40 H 0.15 0.36 5.69 -52.49 -0.30 0.06 16 41 H 0.14 0.27 8.06 -52.48 -0.42 -0.15 16 42 H 0.11 -0.11 9.55 96.90 0.93 0.81 16 43 H 0.13 -0.20 8.06 -52.48 -0.42 -0.62 16 LS Contribution 353.42 15.07 5.33 5.33 Total: 0.00 -16.52 353.42 -9.21 -25.73 By element: Atomic # 1 Polarization: -17.28 SS G_CDS: -4.56 Total: -21.84 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -2.41 Total: -3.19 kcal Atomic # 7 Polarization: -6.08 SS G_CDS: 0.42 Total: -5.66 kcal Atomic # 8 Polarization: 0.15 SS G_CDS: -0.13 Total: 0.02 kcal Atomic # 14 Polarization: 7.47 SS G_CDS: -5.02 Total: 2.45 kcal Atomic # 16 Polarization: -0.01 SS G_CDS: -2.83 Total: -2.83 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -16.52 -9.21 -25.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229630619.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.324 kcal (2) G-P(sol) polarization free energy of solvation -16.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds