Wall clock time and date at job start Tue Mar 31 2020 13:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46895 * 109.47157 * 2 1 4 4 C 1.46901 * 109.47567 * 239.99351 * 2 1 3 5 5 C 1.46903 * 109.46807 * 119.99703 * 2 1 3 6 6 C 1.53003 * 109.47073 * 65.90824 * 5 2 1 7 7 H 1.08993 * 109.47308 * 54.90961 * 6 5 2 8 8 C 1.50700 * 109.46858 * 174.91089 * 6 5 2 9 9 H 1.07996 * 120.00109 * 120.00137 * 8 6 5 10 10 C 1.37881 * 119.99997 * 299.99235 * 8 6 5 11 11 N 1.31510 * 120.00159 * 0.02562 * 10 8 6 12 12 Si 1.86802 * 119.99795 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47297 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46657 * 120.00474 * 12 10 8 15 15 H 1.48502 * 109.47092 * 240.00041 * 12 10 8 16 16 O 1.42901 * 109.47092 * 294.90592 * 6 5 2 17 17 C 1.35990 * 116.99734 * 154.22766 * 16 6 5 18 18 C 1.39120 * 119.84577 * 1.96880 * 17 16 6 19 19 C 1.37659 * 120.44377 * 180.29688 * 18 17 16 20 20 C 1.39700 * 119.85252 * 359.45143 * 19 18 17 21 21 N 1.36029 * 133.30562 * 180.19235 * 20 19 18 22 22 C 1.30988 * 109.61106 * 180.32191 * 21 20 19 23 23 S 1.76197 * 125.07726 * 179.97438 * 22 21 20 24 24 N 1.36704 * 109.84151 * 359.97438 * 22 21 20 25 25 H 0.97003 * 126.37150 * 180.02562 * 24 22 21 26 26 C 1.38523 * 107.24779 * 0.02562 * 24 22 21 27 27 C 1.38384 * 119.84040 * 181.98855 * 17 16 6 28 28 H 1.08994 * 109.47721 * 292.20747 * 1 2 3 29 29 H 1.09006 * 109.46541 * 52.20817 * 1 2 3 30 30 H 1.09006 * 109.47284 * 172.20106 * 1 2 3 31 31 H 1.09006 * 109.46892 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.46877 * 299.99313 * 3 2 1 33 33 H 1.08996 * 109.47345 * 59.99869 * 3 2 1 34 34 H 1.08998 * 109.47199 * 309.28699 * 4 2 1 35 35 H 1.09007 * 109.46687 * 69.28113 * 4 2 1 36 36 H 1.08992 * 109.47243 * 189.27968 * 4 2 1 37 37 H 1.08997 * 109.47391 * 305.90250 * 5 2 1 38 38 H 1.09004 * 109.46958 * 185.90374 * 5 2 1 39 39 H 0.96994 * 120.00534 * 179.97438 * 11 10 8 40 40 H 1.08000 * 119.77250 * 0.02562 * 18 17 16 41 41 H 1.08007 * 120.07290 * 179.72776 * 19 18 17 42 42 H 1.41009 * 99.99672 * 90.02391 * 23 22 21 43 43 H 1.08007 * 120.09330 * 359.95725 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9586 1.3849 0.0000 4 6 1.9587 -0.6926 -1.1993 5 6 1.9586 -0.6925 1.1995 6 6 1.5734 -2.1715 1.1275 7 1 1.9442 -2.5986 0.1959 8 6 2.1816 -2.9063 2.2942 9 1 1.5454 -3.4173 3.0016 10 6 3.5505 -2.9263 2.4584 11 7 4.3253 -2.3037 1.5972 12 14 4.3045 -3.8377 3.9042 13 1 3.2256 -4.4507 4.7200 14 1 5.2093 -4.9022 3.4007 15 1 5.0780 -2.8853 4.7408 16 8 0.1506 -2.2960 1.1757 17 6 -0.3918 -3.4040 0.6035 18 6 0.4375 -4.3709 0.0442 19 6 -0.0986 -5.4944 -0.5436 20 6 -1.4840 -5.6718 -0.5694 21 7 -2.2902 -6.6512 -1.0605 22 6 -3.5434 -6.3425 -0.8368 23 16 -4.9278 -7.3268 -1.3048 24 7 -3.6165 -5.1426 -0.1858 25 1 -4.4266 -4.6896 0.0960 26 6 -2.3186 -4.6943 -0.0038 27 6 -1.7661 -3.5642 0.5800 28 1 -0.3634 0.3884 0.9513 29 1 -0.3632 0.6298 -0.8122 30 1 -0.3634 -1.0182 -0.1395 31 1 3.0487 1.3849 0.0005 32 1 1.5954 1.8987 -0.8901 33 1 1.5953 1.8988 0.8899 34 1 1.4664 -1.6612 -1.2861 35 1 1.7371 -0.0921 -2.0816 36 1 3.0360 -0.8383 -1.1203 37 1 1.5115 -0.2433 2.0863 38 1 3.0435 -0.6018 1.2540 39 1 5.2882 -2.3174 1.7129 40 1 1.5089 -4.2370 0.0675 41 1 0.5507 -6.2391 -0.9799 42 1 -5.0648 -8.1221 -0.1485 43 1 -2.4066 -2.8115 1.0156 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229630619.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:01 Heat of formation + Delta-G solvation = 142.878360 kcal Electronic energy + Delta-G solvation = -25857.233156 eV Core-core repulsion = 22341.609843 eV Total energy + Delta-G solvation = -3515.623313 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.133 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.09700 -42.72538 -40.21895 -37.05548 -35.37702 -34.21629 -31.86776 -30.90294 -29.68668 -29.49773 -29.32881 -27.91067 -25.05342 -24.66923 -23.61705 -22.66122 -22.19495 -19.77348 -19.36014 -19.07752 -18.18060 -17.86010 -17.77755 -17.57950 -17.15937 -16.72011 -16.47819 -16.18483 -15.64310 -15.19074 -14.93240 -14.66111 -14.38572 -14.20957 -13.82466 -13.64961 -13.39355 -13.28557 -13.15410 -13.11250 -13.07987 -12.96235 -12.85550 -12.71907 -12.45664 -12.43550 -12.12058 -11.85127 -11.73080 -11.18576 -11.02267 -10.71473 -9.50055 -9.48301 -8.85091 -8.49426 -6.57480 -0.34277 0.00873 0.41091 1.01879 1.07758 1.31747 1.45923 1.51118 1.71927 1.86433 2.24694 2.44840 2.73517 2.81945 3.06531 3.13465 3.19361 3.36490 3.84163 3.95860 4.00341 4.10962 4.16152 4.24740 4.29661 4.32878 4.37398 4.43400 4.51165 4.53782 4.64213 4.71639 4.79886 4.82180 4.91693 5.01729 5.05847 5.14539 5.25067 5.39800 5.52995 5.60942 5.73227 6.15965 6.24845 6.55686 6.67850 7.18701 8.51243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.258 5.258 3 C -0.043 4.043 4 C -0.045 4.045 5 C 0.012 3.988 6 C 0.197 3.803 7 H 0.063 0.937 8 C -0.548 4.548 9 H 0.052 0.948 10 C 0.064 3.936 11 N -0.888 5.888 12 Si 0.922 3.078 13 H -0.285 1.285 14 H -0.292 1.292 15 H -0.280 1.280 16 O -0.309 6.309 17 C 0.173 3.827 18 C -0.190 4.190 19 C -0.033 4.033 20 C -0.024 4.024 21 N -0.471 5.471 22 C 0.237 3.763 23 S -0.015 6.015 24 N -0.568 5.568 25 H 0.442 0.558 26 C 0.100 3.900 27 C -0.165 4.165 28 H 0.118 0.882 29 H 0.138 0.862 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.141 0.859 33 H 0.122 0.878 34 H 0.096 0.904 35 H 0.146 0.854 36 H 0.111 0.889 37 H 0.120 0.880 38 H 0.149 0.851 39 H 0.276 0.724 40 H 0.147 0.853 41 H 0.134 0.866 42 H 0.125 0.875 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.015 15.979 -7.901 19.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 N 0.085 4.915 3 C -0.183 4.183 4 C -0.186 4.186 5 C -0.109 4.109 6 C 0.142 3.858 7 H 0.080 0.920 8 C -0.586 4.586 9 H 0.070 0.930 10 C -0.140 4.140 11 N -0.526 5.526 12 Si 0.751 3.249 13 H -0.210 1.210 14 H -0.218 1.218 15 H -0.206 1.206 16 O -0.222 6.222 17 C 0.125 3.875 18 C -0.210 4.210 19 C -0.052 4.052 20 C -0.145 4.145 21 N -0.194 5.194 22 C -0.139 4.139 23 S 0.137 5.863 24 N -0.185 5.185 25 H 0.286 0.714 26 C -0.014 4.014 27 C -0.187 4.187 28 H 0.137 0.863 29 H 0.156 0.844 30 H 0.127 0.873 31 H 0.131 0.869 32 H 0.159 0.841 33 H 0.140 0.860 34 H 0.115 0.885 35 H 0.164 0.836 36 H 0.130 0.870 37 H 0.138 0.862 38 H 0.167 0.833 39 H 0.086 0.914 40 H 0.164 0.836 41 H 0.152 0.848 42 H 0.089 0.911 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -8.295 15.039 -8.708 19.257 hybrid contribution 1.172 -0.514 2.767 3.049 sum -7.123 14.526 -5.941 17.235 Atomic orbital electron populations 1.24439 0.76213 1.09250 1.09260 1.45955 1.15437 1.15521 1.14607 1.24217 1.05427 0.78858 1.09834 1.24133 1.05257 1.01674 0.87575 1.24260 1.06522 0.93136 0.86964 1.20408 0.74412 0.92311 0.98686 0.91993 1.21493 0.91619 1.33737 1.11753 0.92959 1.24883 0.97252 0.95030 0.96835 1.69514 1.05864 1.42039 1.35171 0.86047 0.78455 0.79129 0.81251 1.21044 1.21825 1.20617 1.86008 1.25222 1.37230 1.73777 1.18374 0.91181 0.86914 0.91075 1.21341 1.01344 0.95190 1.03138 1.20300 0.90979 0.97209 0.96729 1.19368 0.94935 0.93993 1.06177 1.71063 1.00095 1.27218 1.21035 1.24683 0.96979 0.90357 1.01888 1.87196 1.27609 1.44035 1.27473 1.43523 1.07514 1.18698 1.48813 0.71393 1.18622 0.84681 0.96876 1.01243 1.18967 0.92460 0.98430 1.08861 0.86314 0.84360 0.87297 0.86900 0.84061 0.85994 0.88489 0.83597 0.86988 0.86210 0.83338 0.91435 0.83591 0.84791 0.91114 0.82462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 1.16 7.26 127.69 0.93 2.09 16 2 N -0.26 5.46 0.05 ******* -0.07 5.39 16 3 C -0.04 1.17 7.97 127.69 1.02 2.18 16 4 C -0.04 0.91 7.35 127.69 0.94 1.85 16 5 C 0.01 -0.11 3.68 86.30 0.32 0.21 16 6 C 0.20 0.21 1.16 29.85 0.03 0.25 16 7 H 0.06 0.07 4.04 -2.39 -0.01 0.06 16 8 C -0.55 -7.69 8.22 25.60 0.21 -7.48 16 9 H 0.05 1.04 7.81 -2.91 -0.02 1.02 16 10 C 0.06 1.08 5.29 84.66 0.45 1.53 16 11 N -0.89 -13.05 11.29 21.45 0.24 -12.81 16 12 Si 0.92 17.61 29.54 68.60 2.03 19.64 16 13 H -0.29 -6.22 7.11 99.48 0.71 -5.51 16 14 H -0.29 -6.38 7.11 99.48 0.71 -5.67 16 15 H -0.28 -5.52 7.11 99.48 0.71 -4.81 16 16 O -0.31 0.34 6.69 -93.44 -0.62 -0.29 16 17 C 0.17 0.37 6.09 22.52 0.14 0.50 16 18 C -0.19 -1.06 8.76 22.34 0.20 -0.87 16 19 C -0.03 -0.27 10.09 22.49 0.23 -0.04 16 20 C -0.02 -0.25 7.22 39.38 0.28 0.04 16 21 N -0.47 -5.72 11.32 -188.33 -2.13 -7.85 16 22 C 0.24 1.39 8.44 179.58 1.52 2.91 16 23 S -0.01 -0.01 26.28 -56.49 -1.48 -1.49 16 24 N -0.57 -0.65 6.28 -187.37 -1.18 -1.83 16 25 H 0.44 -2.77 8.96 -92.71 -0.83 -3.60 16 26 C 0.10 0.46 7.29 38.72 0.28 0.74 16 27 C -0.16 -0.09 10.00 22.41 0.22 0.14 16 28 H 0.12 -2.75 7.95 -2.39 -0.02 -2.77 16 29 H 0.14 -4.07 8.04 -2.38 -0.02 -4.09 16 30 H 0.11 -1.86 4.90 -2.38 -0.01 -1.88 16 31 H 0.11 -2.85 8.10 -2.38 -0.02 -2.87 16 32 H 0.14 -4.61 8.02 -2.39 -0.02 -4.63 16 33 H 0.12 -3.43 8.14 -2.39 -0.02 -3.45 16 34 H 0.10 -1.56 6.30 -2.39 -0.02 -1.58 16 35 H 0.15 -4.06 8.01 -2.38 -0.02 -4.08 16 36 H 0.11 -1.87 8.05 -2.39 -0.02 -1.89 16 37 H 0.12 -1.16 7.97 -2.39 -0.02 -1.18 16 38 H 0.15 -0.56 5.88 -2.38 -0.01 -0.58 16 39 H 0.28 4.47 8.31 -92.71 -0.77 3.70 16 40 H 0.15 1.01 5.69 -2.91 -0.02 0.99 16 41 H 0.13 0.96 8.06 -2.91 -0.02 0.94 16 42 H 0.12 -0.32 9.55 73.80 0.70 0.38 16 43 H 0.16 -0.84 8.06 -2.91 -0.02 -0.86 16 Total: 0.00 -42.01 353.42 4.48 -37.54 By element: Atomic # 1 Polarization: -43.29 SS G_CDS: 0.93 Total: -42.35 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: 6.76 Total: 4.06 kcal Atomic # 7 Polarization: -13.96 SS G_CDS: -3.14 Total: -17.10 kcal Atomic # 8 Polarization: 0.34 SS G_CDS: -0.62 Total: -0.29 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: 2.03 Total: 19.64 kcal Atomic # 16 Polarization: -0.01 SS G_CDS: -1.48 Total: -1.49 kcal Total: -42.01 4.48 -37.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229630619.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.416 kcal (2) G-P(sol) polarization free energy of solvation -42.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds