Wall clock time and date at job start Tue Mar 31 2020 13:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 120.00059 * 2 1 4 4 H 1.48501 * 109.46900 * 270.00325 * 3 2 1 5 5 H 1.48497 * 109.46844 * 30.00223 * 3 2 1 6 6 H 1.48496 * 109.47186 * 150.00062 * 3 2 1 7 7 C 1.37873 * 120.00122 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00293 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99674 * 0.02562 * 7 2 1 10 10 N 1.46908 * 109.46809 * 179.97438 * 9 7 2 11 11 C 1.46909 * 110.99758 * 193.95112 * 10 9 7 12 12 C 1.50699 * 109.46989 * 66.04485 * 11 10 9 13 13 C 1.38235 * 120.00125 * 269.72794 * 12 11 10 14 14 C 1.38233 * 120.00069 * 179.76837 * 13 12 11 15 15 C 1.38238 * 119.99866 * 0.50438 * 14 13 12 16 16 C 1.38228 * 120.00016 * 359.74581 * 15 14 13 17 17 C 1.38238 * 120.00243 * 0.02562 * 16 15 14 18 18 C 1.46901 * 110.99948 * 70.00029 * 10 9 7 19 19 C 1.50704 * 109.46752 * 293.94835 * 18 10 9 20 20 C 1.36794 * 119.39757 * 95.02722 * 19 18 10 21 21 C 1.39561 * 118.65824 * 179.97438 * 20 19 18 22 22 C 1.46321 * 135.57157 * 180.02562 * 21 20 19 23 23 C 1.34198 * 106.16021 * 180.02562 * 22 21 20 24 24 O 1.34414 * 110.17999 * 359.97438 * 23 22 21 25 25 C 1.34639 * 110.90870 * 359.73650 * 24 23 22 26 26 C 1.38668 * 134.45001 * 179.54302 * 25 24 23 27 27 N 1.31817 * 120.32696 * 180.43241 * 26 25 24 28 28 H 0.97008 * 119.99767 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47767 * 59.99972 * 9 7 2 30 30 H 1.09000 * 109.47422 * 299.99443 * 9 7 2 31 31 H 1.08994 * 109.46926 * 186.04127 * 11 10 9 32 32 H 1.08997 * 109.46890 * 306.04595 * 11 10 9 33 33 H 1.08007 * 119.99780 * 359.97438 * 13 12 11 34 34 H 1.08000 * 120.00014 * 180.22569 * 14 13 12 35 35 H 1.08004 * 119.99634 * 179.72591 * 15 14 13 36 36 H 1.08001 * 119.99976 * 179.97438 * 16 15 14 37 37 H 1.07994 * 120.00295 * 179.97438 * 17 16 15 38 38 H 1.09005 * 109.46721 * 173.95310 * 18 10 9 39 39 H 1.08992 * 109.47332 * 53.95659 * 18 10 9 40 40 H 1.08004 * 120.67180 * 359.97438 * 20 19 18 41 41 H 1.07994 * 126.91677 * 0.02929 * 22 21 20 42 42 H 1.08006 * 124.90425 * 180.02562 * 23 22 21 43 43 H 1.08002 * 119.83973 * 0.71698 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2057 -3.6157 -0.0027 11 6 1.5360 -4.8805 -0.3345 12 6 1.0426 -4.8293 -1.7575 13 6 -0.2278 -4.3586 -2.0320 14 6 -0.6787 -4.3072 -3.3377 15 6 0.1369 -4.7363 -4.3680 16 6 1.4054 -5.2119 -4.0930 17 6 1.8581 -5.2589 -2.7877 18 6 2.9043 -3.7121 1.2860 19 6 3.7744 -2.4967 1.4778 20 6 3.2921 -1.4307 2.1864 21 6 4.1112 -0.3133 2.3550 22 6 3.9845 0.9845 3.0187 23 6 5.1465 1.6238 2.8137 24 8 5.9785 0.8536 2.0917 25 6 5.4039 -0.3273 1.7949 26 6 5.8038 -1.4515 1.0884 27 7 4.9904 -2.4807 0.9593 28 1 -0.4850 0.8401 0.0004 29 1 0.6246 -2.5563 -0.8919 30 1 0.6240 -2.5575 0.8880 31 1 2.2407 -5.7046 -0.2238 32 1 0.6915 -5.0317 0.3377 33 1 -0.8669 -4.0278 -1.2266 34 1 -1.6699 -3.9360 -3.5525 35 1 -0.2170 -4.7003 -5.3878 36 1 2.0425 -5.5476 -4.8979 37 1 2.8489 -5.6309 -2.5728 38 1 3.5245 -4.6084 1.2967 39 1 2.1732 -3.7666 2.0924 40 1 2.2975 -1.4531 2.6069 41 1 3.1284 1.3535 3.5638 42 1 5.3797 2.6138 3.1771 43 1 6.7882 -1.4858 0.6455 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232550781.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:55 Heat of formation + Delta-G solvation = 90.506696 kcal Electronic energy + Delta-G solvation = -27196.289584 eV Core-core repulsion = 23594.721486 eV Total energy + Delta-G solvation = -3601.568098 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.05352 -39.18700 -38.61854 -36.21656 -32.94369 -32.52605 -31.77903 -30.46436 -29.90386 -29.68032 -27.60031 -26.00728 -23.82941 -23.39882 -22.31365 -21.83097 -21.00174 -20.71847 -19.88058 -17.36611 -16.79245 -16.60552 -16.26399 -15.79960 -15.37086 -15.00485 -14.78066 -14.54519 -14.40451 -14.04081 -13.55478 -13.33934 -12.96793 -12.89931 -12.63030 -12.60216 -12.11499 -12.04913 -11.99212 -11.73604 -11.43036 -11.19052 -11.00255 -10.79061 -10.63016 -10.54119 -10.37366 -10.01582 -9.36483 -9.29970 -9.00916 -8.58015 -8.40256 -8.32435 -8.24868 -7.49019 -7.31734 -6.11627 -4.01567 1.48051 1.76370 1.88093 1.93453 2.87301 3.20314 3.28227 3.35774 3.44675 4.14559 4.40565 4.44505 4.87769 4.96385 5.14559 5.19372 5.26490 5.28199 5.32925 5.43654 5.50293 5.55019 5.61896 5.77467 5.85971 5.94132 5.96238 6.02404 6.09456 6.13195 6.17631 6.30861 6.45409 6.50865 6.58055 6.77111 6.83885 6.89111 6.93876 7.01240 7.11614 7.20502 7.24398 7.46766 7.57647 7.75571 8.02813 8.10390 8.45865 8.71379 8.97207 9.52608 10.97194 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015650 B = 0.004619 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.763879 B = 6060.912090 C = 6959.357646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.866 3.134 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.243 1.243 7 C -0.487 4.487 8 H 0.073 0.927 9 C 0.181 3.819 10 N -0.524 5.524 11 C 0.093 3.907 12 C -0.061 4.061 13 C -0.099 4.099 14 C -0.123 4.123 15 C -0.129 4.129 16 C -0.129 4.129 17 C -0.100 4.100 18 C 0.123 3.877 19 C 0.123 3.877 20 C -0.030 4.030 21 C -0.111 4.111 22 C -0.195 4.195 23 C -0.008 4.008 24 O -0.197 6.197 25 C -0.001 4.001 26 C 0.091 3.909 27 N -0.438 5.438 28 H 0.260 0.740 29 H 0.044 0.956 30 H -0.009 1.009 31 H 0.072 0.928 32 H 0.033 0.967 33 H 0.120 0.880 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.119 0.881 38 H 0.074 0.926 39 H 0.038 0.962 40 H 0.132 0.868 41 H 0.152 0.848 42 H 0.201 0.799 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.260 -5.353 2.379 7.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.140 4.140 3 Si 0.693 3.307 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.167 1.167 7 C -0.525 4.525 8 H 0.091 0.909 9 C 0.056 3.944 10 N -0.249 5.249 11 C -0.034 4.034 12 C -0.062 4.062 13 C -0.117 4.117 14 C -0.141 4.141 15 C -0.147 4.147 16 C -0.147 4.147 17 C -0.118 4.118 18 C -0.005 4.005 19 C -0.011 4.011 20 C -0.051 4.051 21 C -0.119 4.119 22 C -0.214 4.214 23 C -0.074 4.074 24 O -0.097 6.097 25 C -0.051 4.051 26 C -0.071 4.071 27 N -0.149 5.149 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.008 0.992 31 H 0.090 0.910 32 H 0.051 0.949 33 H 0.138 0.862 34 H 0.134 0.866 35 H 0.131 0.869 36 H 0.133 0.867 37 H 0.137 0.863 38 H 0.092 0.908 39 H 0.056 0.944 40 H 0.149 0.851 41 H 0.170 0.830 42 H 0.217 0.783 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 4.960 -5.820 1.504 7.793 hybrid contribution -0.962 2.151 0.840 2.501 sum 3.998 -3.669 2.344 5.911 Atomic orbital electron populations 1.69960 1.06060 1.26761 1.50043 1.24877 0.94618 0.99018 0.95475 0.86983 0.81805 0.83506 0.78383 1.21335 1.21580 1.16671 1.21530 0.94093 0.89715 1.47167 0.90916 1.19993 0.90262 0.87380 0.96777 1.62147 1.30906 1.03122 1.28723 1.20978 0.96928 0.93541 0.91974 1.19731 0.93545 0.97514 0.95405 1.21104 0.95957 0.97890 0.96797 1.21047 0.99786 1.00298 0.92984 1.21017 0.94779 1.00332 0.98586 1.21024 0.96076 1.01113 0.96479 1.20951 0.98927 0.99701 0.92257 1.20630 0.94553 0.94148 0.91181 1.20062 0.90752 0.95976 0.94339 1.20852 0.97888 0.90593 0.95743 1.19876 0.94683 0.95708 1.01597 1.22345 0.99267 0.94282 1.05510 1.23801 0.89962 0.96716 0.96951 1.83886 1.41860 1.23757 1.60198 1.20862 0.93693 0.87856 1.02683 1.21381 1.00087 0.86234 0.99359 1.67363 1.04674 1.25548 1.17280 0.92999 0.93783 0.99167 0.91000 0.94934 0.86207 0.86628 0.86883 0.86747 0.86324 0.90769 0.94390 0.85059 0.83019 0.78279 0.83147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.29 13.29 55.43 0.74 -24.55 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.87 21.14 28.20 -169.99 -4.79 16.35 16 4 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.24 -5.63 3.94 56.52 0.22 -5.41 16 7 C -0.49 -12.82 5.77 -34.44 -0.20 -13.02 16 8 H 0.07 1.97 4.92 -52.48 -0.26 1.71 16 9 C 0.18 4.40 4.50 -4.97 -0.02 4.38 16 10 N -0.52 -10.83 4.55 -238.95 -1.09 -11.92 16 11 C 0.09 1.62 5.12 -4.97 -0.03 1.59 16 12 C -0.06 -1.09 4.92 -104.62 -0.51 -1.60 16 13 C -0.10 -1.76 7.85 -39.58 -0.31 -2.08 16 14 C -0.12 -2.00 10.05 -39.58 -0.40 -2.39 16 15 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 16 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 17 C -0.10 -1.63 9.70 -39.58 -0.38 -2.01 16 18 C 0.12 2.31 5.27 -4.97 -0.03 2.28 16 19 C 0.12 2.50 4.00 -82.95 -0.33 2.17 16 20 C -0.03 -0.62 6.28 -39.61 -0.25 -0.86 16 21 C -0.11 -2.21 4.75 -105.15 -0.50 -2.71 16 22 C -0.19 -3.35 9.26 -37.76 -0.35 -3.70 16 23 C -0.01 -0.12 11.50 29.31 0.34 0.21 16 24 O -0.20 -3.49 10.57 4.48 0.05 -3.44 16 25 C 0.00 -0.02 7.29 -38.42 -0.28 -0.30 16 26 C 0.09 1.72 11.24 -17.40 -0.20 1.52 16 27 N -0.44 -8.86 10.11 -9.63 -0.10 -8.96 16 28 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 29 H 0.04 1.16 5.26 -51.93 -0.27 0.88 16 30 H -0.01 -0.24 7.99 -51.93 -0.41 -0.66 16 31 H 0.07 1.08 7.87 -51.93 -0.41 0.67 16 32 H 0.03 0.55 8.06 -51.93 -0.42 0.13 16 33 H 0.12 2.17 7.80 -52.48 -0.41 1.76 16 34 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 35 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 36 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 37 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 38 H 0.07 1.24 7.93 -51.93 -0.41 0.83 16 39 H 0.04 0.67 7.90 -51.93 -0.41 0.26 16 40 H 0.13 2.73 7.98 -52.48 -0.42 2.31 16 41 H 0.15 2.31 8.06 -52.49 -0.42 1.89 16 42 H 0.20 2.05 8.06 -52.48 -0.42 1.62 16 43 H 0.15 2.35 8.06 -52.49 -0.42 1.93 16 LS Contribution 348.35 15.07 5.25 5.25 Total: -1.00 -31.16 348.35 -9.98 -41.14 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -5.70 Total: 5.69 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: -4.34 Total: -19.56 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: -0.45 Total: -45.43 kcal Atomic # 8 Polarization: -3.49 SS G_CDS: 0.05 Total: -3.44 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.79 Total: 16.35 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.16 -9.98 -41.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232550781.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.651 kcal (2) G-P(sol) polarization free energy of solvation -31.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds