Wall clock time and date at job start Tue Mar 31 2020 13:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 120.00059 * 2 1 4 4 H 1.48501 * 109.46900 * 270.00325 * 3 2 1 5 5 H 1.48497 * 109.46844 * 30.00223 * 3 2 1 6 6 H 1.48496 * 109.47186 * 150.00062 * 3 2 1 7 7 C 1.37873 * 120.00122 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00293 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99674 * 0.02562 * 7 2 1 10 10 N 1.46908 * 109.46809 * 179.97438 * 9 7 2 11 11 C 1.46909 * 110.99758 * 193.95112 * 10 9 7 12 12 C 1.50699 * 109.46989 * 66.04485 * 11 10 9 13 13 C 1.38235 * 120.00125 * 269.72794 * 12 11 10 14 14 C 1.38233 * 120.00069 * 179.76837 * 13 12 11 15 15 C 1.38238 * 119.99866 * 0.50438 * 14 13 12 16 16 C 1.38228 * 120.00016 * 359.74581 * 15 14 13 17 17 C 1.38238 * 120.00243 * 0.02562 * 16 15 14 18 18 C 1.46901 * 110.99948 * 70.00029 * 10 9 7 19 19 C 1.50704 * 109.46752 * 293.94835 * 18 10 9 20 20 C 1.36794 * 119.39757 * 95.02722 * 19 18 10 21 21 C 1.39561 * 118.65824 * 179.97438 * 20 19 18 22 22 C 1.46321 * 135.57157 * 180.02562 * 21 20 19 23 23 C 1.34198 * 106.16021 * 180.02562 * 22 21 20 24 24 O 1.34414 * 110.17999 * 359.97438 * 23 22 21 25 25 C 1.34639 * 110.90870 * 359.73650 * 24 23 22 26 26 C 1.38668 * 134.45001 * 179.54302 * 25 24 23 27 27 N 1.31817 * 120.32696 * 180.43241 * 26 25 24 28 28 H 0.97008 * 119.99767 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47767 * 59.99972 * 9 7 2 30 30 H 1.09000 * 109.47422 * 299.99443 * 9 7 2 31 31 H 1.08994 * 109.46926 * 186.04127 * 11 10 9 32 32 H 1.08997 * 109.46890 * 306.04595 * 11 10 9 33 33 H 1.08007 * 119.99780 * 359.97438 * 13 12 11 34 34 H 1.08000 * 120.00014 * 180.22569 * 14 13 12 35 35 H 1.08004 * 119.99634 * 179.72591 * 15 14 13 36 36 H 1.08001 * 119.99976 * 179.97438 * 16 15 14 37 37 H 1.07994 * 120.00295 * 179.97438 * 17 16 15 38 38 H 1.09005 * 109.46721 * 173.95310 * 18 10 9 39 39 H 1.08992 * 109.47332 * 53.95659 * 18 10 9 40 40 H 1.08004 * 120.67180 * 359.97438 * 20 19 18 41 41 H 1.07994 * 126.91677 * 0.02929 * 22 21 20 42 42 H 1.08006 * 124.90425 * 180.02562 * 23 22 21 43 43 H 1.08002 * 119.83973 * 0.71698 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2057 -3.6157 -0.0027 11 6 1.5360 -4.8805 -0.3345 12 6 1.0426 -4.8293 -1.7575 13 6 -0.2278 -4.3586 -2.0320 14 6 -0.6787 -4.3072 -3.3377 15 6 0.1369 -4.7363 -4.3680 16 6 1.4054 -5.2119 -4.0930 17 6 1.8581 -5.2589 -2.7877 18 6 2.9043 -3.7121 1.2860 19 6 3.7744 -2.4967 1.4778 20 6 3.2921 -1.4307 2.1864 21 6 4.1112 -0.3133 2.3550 22 6 3.9845 0.9845 3.0187 23 6 5.1465 1.6238 2.8137 24 8 5.9785 0.8536 2.0917 25 6 5.4039 -0.3273 1.7949 26 6 5.8038 -1.4515 1.0884 27 7 4.9904 -2.4807 0.9593 28 1 -0.4850 0.8401 0.0004 29 1 0.6246 -2.5563 -0.8919 30 1 0.6240 -2.5575 0.8880 31 1 2.2407 -5.7046 -0.2238 32 1 0.6915 -5.0317 0.3377 33 1 -0.8669 -4.0278 -1.2266 34 1 -1.6699 -3.9360 -3.5525 35 1 -0.2170 -4.7003 -5.3878 36 1 2.0425 -5.5476 -4.8979 37 1 2.8489 -5.6309 -2.5728 38 1 3.5245 -4.6084 1.2967 39 1 2.1732 -3.7666 2.0924 40 1 2.2975 -1.4531 2.6069 41 1 3.1284 1.3535 3.5638 42 1 5.3797 2.6138 3.1771 43 1 6.7882 -1.4858 0.6455 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232550781.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:54 Heat of formation + Delta-G solvation = 71.890287 kcal Electronic energy + Delta-G solvation = -27197.096852 eV Core-core repulsion = 23594.721486 eV Total energy + Delta-G solvation = -3602.375366 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.45462 -40.63058 -39.97399 -37.75751 -34.78119 -34.07573 -33.19116 -31.72582 -31.35165 -31.08996 -29.46920 -27.41871 -25.57973 -24.83731 -23.77747 -23.23651 -22.38314 -22.08840 -21.40534 -18.80285 -18.66112 -18.07622 -17.51042 -17.27558 -16.82401 -16.59403 -16.22000 -16.10327 -15.96755 -15.46093 -15.09829 -14.88775 -14.38856 -14.23389 -14.12804 -13.95595 -13.89010 -13.56376 -13.32243 -13.22066 -13.11050 -12.82404 -12.64971 -12.43765 -12.38007 -11.88990 -11.80699 -11.64512 -11.23688 -10.96362 -10.61852 -10.53362 -9.74869 -9.67690 -9.55898 -9.03819 -8.97444 -8.17083 -6.12539 0.05914 0.34027 0.57796 0.61782 1.31052 1.36322 1.48093 1.52432 1.87669 2.40519 2.76901 3.02705 3.20219 3.47920 3.57786 3.67198 3.76023 3.99452 4.05184 4.12355 4.24828 4.27910 4.34331 4.37436 4.50564 4.59057 4.62435 4.66644 4.74537 4.77348 4.86751 4.87175 5.13941 5.18295 5.21169 5.25649 5.29377 5.37440 5.46457 5.56832 5.66170 5.69517 5.71677 5.85098 6.10853 6.16657 6.23025 6.37286 6.63178 6.92645 7.18821 7.46425 8.92277 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.015650 B = 0.004619 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.763879 B = 6060.912090 C = 6959.357646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.018 3.982 3 Si 0.914 3.086 4 H -0.303 1.303 5 H -0.287 1.287 6 H -0.224 1.224 7 C -0.483 4.483 8 H 0.068 0.932 9 C 0.200 3.800 10 N -0.531 5.531 11 C 0.095 3.905 12 C -0.081 4.081 13 C -0.123 4.123 14 C -0.136 4.136 15 C -0.129 4.129 16 C -0.128 4.128 17 C -0.109 4.109 18 C 0.122 3.878 19 C 0.116 3.884 20 C -0.053 4.053 21 C -0.120 4.120 22 C -0.229 4.229 23 C 0.020 3.980 24 O -0.197 6.197 25 C -0.022 4.022 26 C 0.101 3.899 27 N -0.455 5.455 28 H 0.257 0.743 29 H 0.022 0.978 30 H -0.036 1.036 31 H 0.099 0.901 32 H 0.031 0.969 33 H 0.100 0.900 34 H 0.128 0.872 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.133 0.867 38 H 0.098 0.902 39 H 0.041 0.959 40 H 0.115 0.885 41 H 0.166 0.834 42 H 0.255 0.745 43 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.795 -5.005 1.822 8.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.180 4.180 3 Si 0.741 3.259 4 H -0.231 1.231 5 H -0.213 1.213 6 H -0.147 1.147 7 C -0.521 4.521 8 H 0.086 0.914 9 C 0.074 3.926 10 N -0.256 5.256 11 C -0.033 4.033 12 C -0.082 4.082 13 C -0.142 4.142 14 C -0.154 4.154 15 C -0.147 4.147 16 C -0.146 4.146 17 C -0.128 4.128 18 C -0.006 4.006 19 C -0.017 4.017 20 C -0.074 4.074 21 C -0.127 4.127 22 C -0.248 4.248 23 C -0.045 4.045 24 O -0.096 6.096 25 C -0.071 4.071 26 C -0.062 4.062 27 N -0.165 5.165 28 H 0.066 0.934 29 H 0.040 0.960 30 H -0.019 1.019 31 H 0.117 0.883 32 H 0.049 0.951 33 H 0.119 0.881 34 H 0.146 0.854 35 H 0.162 0.838 36 H 0.164 0.836 37 H 0.151 0.849 38 H 0.116 0.884 39 H 0.059 0.941 40 H 0.133 0.867 41 H 0.183 0.817 42 H 0.271 0.729 43 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 7.509 -5.501 0.968 9.358 hybrid contribution -1.610 2.026 1.055 2.794 sum 5.899 -3.475 2.023 7.139 Atomic orbital electron populations 1.70068 1.07275 1.26969 1.52558 1.25460 0.95118 1.01600 0.95803 0.86257 0.81745 0.80615 0.77328 1.23083 1.21318 1.14680 1.21634 0.93743 0.90462 1.46274 0.91444 1.19599 0.90124 0.88509 0.94377 1.62063 1.30148 1.03548 1.29823 1.21065 0.97400 0.92668 0.92119 1.19850 0.93808 0.98594 0.95923 1.21129 0.96440 0.99313 0.97294 1.21313 1.00846 1.00467 0.92752 1.21409 0.94586 0.99040 0.99640 1.21437 0.96403 0.99958 0.96788 1.21209 0.99362 0.99614 0.92603 1.20727 0.94631 0.94801 0.90464 1.20257 0.91108 0.96286 0.94071 1.20793 0.97699 0.91659 0.97203 1.20269 0.94852 0.96367 1.01232 1.22660 1.01153 0.93769 1.07240 1.24845 0.88378 0.97527 0.93766 1.83915 1.42205 1.23224 1.60295 1.21002 0.93724 0.88863 1.03537 1.21979 1.00863 0.85524 0.97831 1.67430 1.04759 1.26401 1.17956 0.93376 0.96033 1.01851 0.88267 0.95078 0.88143 0.85397 0.83795 0.83571 0.84906 0.88356 0.94070 0.86719 0.81672 0.72906 0.79937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.79 13.29 21.45 0.28 -54.51 16 2 C 0.02 1.02 5.46 84.65 0.46 1.49 16 3 Si 0.91 43.84 28.20 68.60 1.93 45.77 16 4 H -0.30 -15.25 7.11 99.48 0.71 -14.54 16 5 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 6 H -0.22 -9.88 3.94 99.48 0.39 -9.49 16 7 C -0.48 -26.05 5.77 25.60 0.15 -25.90 16 8 H 0.07 3.68 4.92 -2.91 -0.01 3.66 16 9 C 0.20 10.16 4.50 85.55 0.38 10.54 16 10 N -0.53 -22.27 4.55 -909.91 -4.14 -26.41 16 11 C 0.09 3.30 5.12 85.55 0.44 3.74 16 12 C -0.08 -2.90 4.92 -19.87 -0.10 -3.00 16 13 C -0.12 -4.57 7.85 22.27 0.17 -4.40 16 14 C -0.14 -4.42 10.05 22.27 0.22 -4.19 16 15 C -0.13 -3.62 10.05 22.27 0.22 -3.39 16 16 C -0.13 -3.55 10.05 22.27 0.22 -3.32 16 17 C -0.11 -3.43 9.70 22.27 0.22 -3.22 16 18 C 0.12 4.57 5.27 85.56 0.45 5.02 16 19 C 0.12 4.70 4.00 42.17 0.17 4.87 16 20 C -0.05 -2.20 6.28 22.25 0.14 -2.06 16 21 C -0.12 -4.63 4.75 -20.21 -0.10 -4.73 16 22 C -0.23 -7.36 9.26 23.45 0.22 -7.15 16 23 C 0.02 0.54 11.50 66.90 0.77 1.31 16 24 O -0.20 -6.27 10.57 -6.87 -0.07 -6.34 16 25 C -0.02 -0.79 7.29 23.02 0.17 -0.62 16 26 C 0.10 3.58 11.24 84.80 0.95 4.53 16 27 N -0.45 -17.84 10.11 -184.39 -1.86 -19.71 16 28 H 0.26 14.65 8.31 -92.70 -0.77 13.88 16 29 H 0.02 1.20 5.26 -2.39 -0.01 1.19 16 30 H -0.04 -1.98 7.99 -2.39 -0.02 -2.00 16 31 H 0.10 2.87 7.87 -2.39 -0.02 2.85 16 32 H 0.03 1.08 8.06 -2.39 -0.02 1.06 16 33 H 0.10 3.99 7.80 -2.91 -0.02 3.96 16 34 H 0.13 3.68 8.06 -2.91 -0.02 3.66 16 35 H 0.14 3.10 8.06 -2.91 -0.02 3.07 16 36 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 37 H 0.13 3.69 8.06 -2.91 -0.02 3.67 16 38 H 0.10 3.17 7.93 -2.38 -0.02 3.15 16 39 H 0.04 1.50 7.90 -2.39 -0.02 1.49 16 40 H 0.11 5.04 7.98 -2.91 -0.02 5.01 16 41 H 0.17 4.74 8.06 -2.91 -0.02 4.71 16 42 H 0.26 3.66 8.06 -2.91 -0.02 3.63 16 43 H 0.18 5.11 8.06 -2.91 -0.02 5.09 16 Total: -1.00 -69.40 348.35 2.01 -67.39 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: 0.70 Total: 24.28 kcal Atomic # 6 Polarization: -35.64 SS G_CDS: 5.17 Total: -30.47 kcal Atomic # 7 Polarization: -94.90 SS G_CDS: -5.72 Total: -100.63 kcal Atomic # 8 Polarization: -6.27 SS G_CDS: -0.07 Total: -6.34 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.93 Total: 45.77 kcal Total: -69.40 2.01 -67.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232550781.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.282 kcal (2) G-P(sol) polarization free energy of solvation -69.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds