Wall clock time and date at job start Tue Mar 31 2020 13:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00052 * 2 1 4 4 H 1.48500 * 109.47051 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46709 * 299.99288 * 3 2 1 6 6 H 1.48493 * 109.47518 * 59.99516 * 3 2 1 7 7 C 1.37878 * 119.99967 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00316 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99836 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47318 * 184.61909 * 9 7 2 11 11 C 1.46900 * 110.99831 * 296.72271 * 10 9 7 12 12 C 1.50704 * 109.47347 * 288.52241 * 11 10 9 13 13 N 1.29910 * 124.85194 * 89.69403 * 12 11 10 14 14 C 1.36064 * 108.79373 * 179.90053 * 13 12 11 15 15 C 1.39585 * 133.80232 * 180.10544 * 14 13 12 16 16 C 1.37681 * 119.73039 * 180.25993 * 15 14 13 17 17 C 1.38717 * 120.42194 * 0.04047 * 16 15 14 18 18 C 1.37907 * 120.47585 * 359.95791 * 17 16 15 19 19 C 1.38673 * 119.87771 * 0.02562 * 18 17 16 20 20 O 1.34230 * 124.85709 * 270.00040 * 12 11 10 21 21 C 1.46903 * 111.00040 * 60.67448 * 10 9 7 22 22 C 1.50703 * 109.47012 * 66.04793 * 21 10 9 23 23 C 1.38235 * 119.99854 * 89.99853 * 22 21 10 24 24 C 1.38229 * 119.99882 * 179.97438 * 23 22 21 25 25 C 1.38238 * 120.00265 * 0.07288 * 24 23 22 26 26 C 1.38231 * 119.99630 * 359.90705 * 25 24 23 27 27 C 1.38233 * 119.99953 * 269.97966 * 22 21 10 28 28 H 0.97005 * 119.99733 * 359.97438 * 1 2 3 29 29 H 1.09008 * 109.47050 * 64.61742 * 9 7 2 30 30 H 1.09000 * 109.47611 * 304.62008 * 9 7 2 31 31 H 1.09000 * 109.47396 * 48.52538 * 11 10 9 32 32 H 1.08997 * 109.47045 * 168.52432 * 11 10 9 33 33 H 1.08006 * 120.13589 * 0.29848 * 15 14 13 34 34 H 1.08006 * 119.78944 * 180.02562 * 16 15 14 35 35 H 1.08005 * 119.76559 * 179.97438 * 17 16 15 36 36 H 1.07995 * 120.06176 * 180.02562 * 18 17 16 37 37 H 1.08992 * 109.46860 * 306.04840 * 21 10 9 38 38 H 1.09000 * 109.46849 * 186.04649 * 21 10 9 39 39 H 1.08001 * 119.99917 * 359.70383 * 23 22 21 40 40 H 1.08002 * 119.99975 * 179.97438 * 24 23 22 41 41 H 1.08002 * 120.00258 * 180.02562 * 25 24 23 42 42 H 1.07999 * 120.00013 * 180.02562 * 26 25 24 43 43 H 1.08002 * 120.00100 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2123 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2016 -3.6135 0.1127 11 6 3.0963 -3.6613 -1.0514 12 6 2.3239 -4.1237 -2.2601 13 7 1.6933 -3.3403 -3.0825 14 6 1.1133 -4.0982 -4.0522 15 6 0.3326 -3.8036 -5.1712 16 6 -0.1186 -4.8247 -5.9770 17 6 0.1971 -6.1431 -5.6832 18 6 0.9675 -6.4489 -4.5810 19 6 1.4308 -5.4330 -3.7586 20 8 2.1842 -5.4042 -2.6375 21 6 2.9683 -3.5276 1.3628 22 6 2.0422 -3.7271 2.5348 23 6 1.8182 -4.9980 3.0302 24 6 0.9692 -5.1809 4.1055 25 6 0.3429 -4.0931 4.6846 26 6 0.5672 -2.8221 4.1895 27 6 1.4171 -2.6391 3.1147 28 1 -0.4850 0.8401 0.0004 29 1 0.6882 -2.5937 -0.9282 30 1 0.5634 -2.5217 0.8459 31 1 3.5028 -2.6674 -1.2384 32 1 3.9124 -4.3564 -0.8541 33 1 0.0840 -2.7787 -5.4043 34 1 -0.7224 -4.5978 -6.8432 35 1 -0.1629 -6.9359 -6.3223 36 1 1.2096 -7.4777 -4.3588 37 1 3.4384 -2.5468 1.4340 38 1 3.7369 -4.3004 1.3714 39 1 2.3032 -5.8485 2.5743 40 1 0.7938 -6.1739 4.4923 41 1 -0.3202 -4.2359 5.5251 42 1 0.0783 -1.9722 4.6421 43 1 1.5926 -1.6460 2.7281 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232555302.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:07 Heat of formation + Delta-G solvation = 75.631692 kcal Electronic energy + Delta-G solvation = -26423.985371 eV Core-core repulsion = 22821.772244 eV Total energy + Delta-G solvation = -3602.213127 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.83769 -38.92689 -37.82450 -36.66723 -34.27034 -32.53591 -31.50149 -30.48379 -30.35130 -29.60226 -27.43101 -26.49044 -24.29411 -22.90830 -22.46784 -21.96510 -21.54602 -20.78630 -19.76259 -17.72535 -16.98444 -16.67155 -16.42914 -16.04311 -15.41375 -14.97531 -14.70630 -14.58762 -14.38275 -14.02431 -13.71034 -13.63505 -13.41837 -12.87641 -12.42544 -12.28559 -12.22274 -12.21597 -12.04617 -11.53413 -11.26862 -11.13034 -11.06854 -10.93237 -10.88150 -10.59195 -10.38747 -10.25763 -9.98612 -9.91069 -9.66923 -8.62462 -8.44495 -8.32340 -8.26923 -8.12410 -7.38672 -6.01736 -4.09594 0.92761 1.41058 1.87043 1.96912 2.75909 2.90797 3.26877 3.36033 3.37010 3.85459 4.17608 4.33986 4.40902 4.74827 4.95277 5.10243 5.25448 5.30014 5.30430 5.35117 5.36874 5.40421 5.52052 5.61170 5.67215 5.73493 5.87507 6.01782 6.05398 6.14470 6.20866 6.28627 6.34833 6.42917 6.49687 6.56826 6.57383 6.67399 6.83846 6.93951 7.06184 7.13961 7.28751 7.53966 7.57927 7.82744 7.92249 8.07899 8.14089 8.24131 8.96783 9.55625 11.04354 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.009903 B = 0.004543 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2826.793862 B = 6162.215179 C = 8088.530443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.072 3.928 3 Si 0.883 3.117 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.544 4.544 8 H 0.056 0.944 9 C 0.178 3.822 10 N -0.535 5.535 11 C 0.141 3.859 12 C 0.283 3.717 13 N -0.458 5.458 14 C 0.029 3.971 15 C -0.062 4.062 16 C -0.127 4.127 17 C -0.106 4.106 18 C -0.094 4.094 19 C 0.000 4.000 20 O -0.214 6.214 21 C 0.099 3.901 22 C -0.062 4.062 23 C -0.107 4.107 24 C -0.135 4.135 25 C -0.129 4.129 26 C -0.127 4.127 27 C -0.086 4.086 28 H 0.261 0.739 29 H 0.038 0.962 30 H 0.044 0.956 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.130 0.870 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.115 0.885 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.115 0.885 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.891 -11.590 -2.654 12.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.131 4.131 3 Si 0.711 3.289 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.583 4.583 8 H 0.074 0.926 9 C 0.053 3.947 10 N -0.260 5.260 11 C 0.011 3.989 12 C 0.071 3.929 13 N -0.187 5.187 14 C -0.083 4.083 15 C -0.081 4.081 16 C -0.147 4.147 17 C -0.124 4.124 18 C -0.113 4.113 19 C -0.051 4.051 20 O -0.106 6.106 21 C -0.028 4.028 22 C -0.063 4.063 23 C -0.126 4.126 24 C -0.153 4.153 25 C -0.148 4.148 26 C -0.145 4.145 27 C -0.104 4.104 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.116 0.884 32 H 0.105 0.895 33 H 0.152 0.848 34 H 0.150 0.850 35 H 0.152 0.848 36 H 0.148 0.852 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.133 0.867 40 H 0.130 0.870 41 H 0.129 0.871 42 H 0.133 0.867 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.439 -11.255 -2.601 11.807 hybrid contribution 0.615 1.077 -0.114 1.246 sum 3.054 -10.178 -2.715 10.968 Atomic orbital electron populations 1.69961 1.05953 1.26557 1.49672 1.24857 0.94623 0.98797 0.94866 0.86684 0.80159 0.84408 0.77616 1.19848 1.21011 1.21085 1.21545 0.92879 0.91824 1.52051 0.92582 1.19990 0.90974 0.84804 0.98929 1.62538 1.16444 1.48287 0.98697 1.20509 0.92101 1.01422 0.84819 1.26629 0.94485 0.75576 0.96164 1.70924 1.11771 1.32295 1.03668 1.20102 1.01492 0.89489 0.97248 1.20355 0.95559 1.00401 0.91747 1.20953 1.01278 0.92243 1.00185 1.20889 0.98209 0.96895 0.96427 1.19793 1.00169 0.97037 0.94260 1.20378 0.98105 0.97335 0.89282 1.84514 1.57926 1.32009 1.36139 1.20901 0.93551 1.00968 0.87375 1.19717 0.97989 0.92883 0.95704 1.20961 0.98754 0.96550 0.96310 1.20968 0.98673 0.98173 0.97532 1.21018 1.00333 0.93120 1.00310 1.21121 0.99123 0.96835 0.97468 1.21405 0.94812 1.00120 0.94084 0.92939 0.94387 0.93768 0.88421 0.89504 0.84827 0.85020 0.84784 0.85223 0.92067 0.91818 0.86688 0.87001 0.87071 0.86707 0.84593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.46 13.29 55.43 0.74 -24.72 16 2 C 0.07 1.94 5.46 -17.82 -0.10 1.85 16 3 Si 0.88 20.91 29.54 -169.99 -5.02 15.89 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.54 -13.99 6.88 -34.44 -0.24 -14.23 16 8 H 0.06 1.40 5.95 -52.49 -0.31 1.09 16 9 C 0.18 4.43 4.58 -4.98 -0.02 4.41 16 10 N -0.53 -10.91 4.65 -238.96 -1.11 -12.02 16 11 C 0.14 2.60 5.44 -4.97 -0.03 2.57 16 12 C 0.28 5.67 7.09 -13.09 -0.09 5.58 16 13 N -0.46 -10.00 10.56 -8.70 -0.09 -10.09 16 14 C 0.03 0.55 7.24 -84.71 -0.61 -0.06 16 15 C -0.06 -0.97 10.10 -39.28 -0.40 -1.36 16 16 C -0.13 -1.54 10.02 -39.61 -0.40 -1.93 16 17 C -0.11 -1.20 10.03 -39.53 -0.40 -1.59 16 18 C -0.09 -1.26 10.06 -39.54 -0.40 -1.66 16 19 C 0.00 0.00 7.43 -38.64 -0.29 -0.29 16 20 O -0.21 -4.02 10.77 3.65 0.04 -3.98 16 21 C 0.10 1.78 4.91 -4.97 -0.02 1.75 16 22 C -0.06 -1.13 4.88 -104.62 -0.51 -1.64 16 23 C -0.11 -1.73 9.70 -39.59 -0.38 -2.11 16 24 C -0.14 -2.02 10.05 -39.58 -0.40 -2.42 16 25 C -0.13 -1.97 10.05 -39.58 -0.40 -2.37 16 26 C -0.13 -2.17 10.05 -39.58 -0.40 -2.57 16 27 C -0.09 -1.64 7.96 -39.58 -0.31 -1.96 16 28 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.04 1.08 6.78 -51.92 -0.35 0.72 16 30 H 0.04 1.20 6.12 -51.93 -0.32 0.88 16 31 H 0.10 1.92 6.33 -51.93 -0.33 1.59 16 32 H 0.09 1.28 7.82 -51.93 -0.41 0.87 16 33 H 0.13 1.97 8.06 -52.48 -0.42 1.54 16 34 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 35 H 0.13 1.03 8.06 -52.48 -0.42 0.60 16 36 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 37 H 0.06 1.16 6.37 -51.93 -0.33 0.83 16 38 H 0.06 0.95 7.81 -51.93 -0.41 0.55 16 39 H 0.12 1.65 8.06 -52.49 -0.42 1.22 16 40 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 41 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 42 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 43 H 0.14 2.90 7.56 -52.49 -0.40 2.50 16 LS Contribution 359.56 15.07 5.42 5.42 Total: -1.00 -31.17 359.56 -10.79 -41.96 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -5.37 Total: 5.58 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: -5.39 Total: -18.04 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: -0.47 Total: -46.83 kcal Atomic # 8 Polarization: -4.02 SS G_CDS: 0.04 Total: -3.98 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.17 -10.79 -41.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232555302.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.596 kcal (2) G-P(sol) polarization free energy of solvation -31.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds