Wall clock time and date at job start Tue Mar 31 2020 13:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00052 * 2 1 4 4 H 1.48500 * 109.47051 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46709 * 299.99288 * 3 2 1 6 6 H 1.48493 * 109.47518 * 59.99516 * 3 2 1 7 7 C 1.37878 * 119.99967 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00316 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99836 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47318 * 184.61909 * 9 7 2 11 11 C 1.46900 * 110.99831 * 296.72271 * 10 9 7 12 12 C 1.50704 * 109.47347 * 288.52241 * 11 10 9 13 13 N 1.29910 * 124.85194 * 89.69403 * 12 11 10 14 14 C 1.36064 * 108.79373 * 179.90053 * 13 12 11 15 15 C 1.39585 * 133.80232 * 180.10544 * 14 13 12 16 16 C 1.37681 * 119.73039 * 180.25993 * 15 14 13 17 17 C 1.38717 * 120.42194 * 0.04047 * 16 15 14 18 18 C 1.37907 * 120.47585 * 359.95791 * 17 16 15 19 19 C 1.38673 * 119.87771 * 0.02562 * 18 17 16 20 20 O 1.34230 * 124.85709 * 270.00040 * 12 11 10 21 21 C 1.46903 * 111.00040 * 60.67448 * 10 9 7 22 22 C 1.50703 * 109.47012 * 66.04793 * 21 10 9 23 23 C 1.38235 * 119.99854 * 89.99853 * 22 21 10 24 24 C 1.38229 * 119.99882 * 179.97438 * 23 22 21 25 25 C 1.38238 * 120.00265 * 0.07288 * 24 23 22 26 26 C 1.38231 * 119.99630 * 359.90705 * 25 24 23 27 27 C 1.38233 * 119.99953 * 269.97966 * 22 21 10 28 28 H 0.97005 * 119.99733 * 359.97438 * 1 2 3 29 29 H 1.09008 * 109.47050 * 64.61742 * 9 7 2 30 30 H 1.09000 * 109.47611 * 304.62008 * 9 7 2 31 31 H 1.09000 * 109.47396 * 48.52538 * 11 10 9 32 32 H 1.08997 * 109.47045 * 168.52432 * 11 10 9 33 33 H 1.08006 * 120.13589 * 0.29848 * 15 14 13 34 34 H 1.08006 * 119.78944 * 180.02562 * 16 15 14 35 35 H 1.08005 * 119.76559 * 179.97438 * 17 16 15 36 36 H 1.07995 * 120.06176 * 180.02562 * 18 17 16 37 37 H 1.08992 * 109.46860 * 306.04840 * 21 10 9 38 38 H 1.09000 * 109.46849 * 186.04649 * 21 10 9 39 39 H 1.08001 * 119.99917 * 359.70383 * 23 22 21 40 40 H 1.08002 * 119.99975 * 179.97438 * 24 23 22 41 41 H 1.08002 * 120.00258 * 180.02562 * 25 24 23 42 42 H 1.07999 * 120.00013 * 180.02562 * 26 25 24 43 43 H 1.08002 * 120.00100 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2123 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2016 -3.6135 0.1127 11 6 3.0963 -3.6613 -1.0514 12 6 2.3239 -4.1237 -2.2601 13 7 1.6933 -3.3403 -3.0825 14 6 1.1133 -4.0982 -4.0522 15 6 0.3326 -3.8036 -5.1712 16 6 -0.1186 -4.8247 -5.9770 17 6 0.1971 -6.1431 -5.6832 18 6 0.9675 -6.4489 -4.5810 19 6 1.4308 -5.4330 -3.7586 20 8 2.1842 -5.4042 -2.6375 21 6 2.9683 -3.5276 1.3628 22 6 2.0422 -3.7271 2.5348 23 6 1.8182 -4.9980 3.0302 24 6 0.9692 -5.1809 4.1055 25 6 0.3429 -4.0931 4.6846 26 6 0.5672 -2.8221 4.1895 27 6 1.4171 -2.6391 3.1147 28 1 -0.4850 0.8401 0.0004 29 1 0.6882 -2.5937 -0.9282 30 1 0.5634 -2.5217 0.8459 31 1 3.5028 -2.6674 -1.2384 32 1 3.9124 -4.3564 -0.8541 33 1 0.0840 -2.7787 -5.4043 34 1 -0.7224 -4.5978 -6.8432 35 1 -0.1629 -6.9359 -6.3223 36 1 1.2096 -7.4777 -4.3588 37 1 3.4384 -2.5468 1.4340 38 1 3.7369 -4.3004 1.3714 39 1 2.3032 -5.8485 2.5743 40 1 0.7938 -6.1739 4.4923 41 1 -0.3202 -4.2359 5.5251 42 1 0.0783 -1.9722 4.6421 43 1 1.5926 -1.6460 2.7281 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232555302.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:06 Heat of formation + Delta-G solvation = 55.346701 kcal Electronic energy + Delta-G solvation = -26424.864994 eV Core-core repulsion = 22821.772244 eV Total energy + Delta-G solvation = -3603.092750 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.17010 -40.30036 -38.97256 -38.20008 -35.65737 -34.58252 -32.83760 -31.66509 -31.59715 -30.95612 -29.23257 -27.90400 -26.07805 -24.20670 -23.84041 -23.26370 -22.86804 -22.16056 -21.35175 -18.93840 -18.69887 -18.09799 -17.86349 -17.43277 -16.84084 -16.47729 -16.23111 -16.03899 -15.89642 -15.30932 -15.13031 -14.96219 -14.71268 -14.30317 -14.15580 -13.64147 -13.45277 -13.42411 -13.22253 -13.11234 -12.87032 -12.76914 -12.60998 -12.46622 -12.38580 -12.28632 -12.05078 -11.73319 -11.63817 -11.59890 -11.30861 -10.55590 -9.77581 -9.64946 -9.59668 -9.38984 -9.10218 -8.10822 -6.25522 -0.27582 0.27019 0.57280 0.66070 1.34554 1.37143 1.42742 1.46503 1.58866 2.38965 2.68792 2.86151 3.02552 3.18110 3.55125 3.57723 3.95090 4.03362 4.10717 4.15741 4.23272 4.28561 4.30489 4.40177 4.42412 4.47094 4.55394 4.68336 4.75545 4.85492 4.95112 4.96620 5.11897 5.22621 5.25332 5.30796 5.32674 5.36832 5.40683 5.43414 5.69022 5.75885 5.78412 5.80961 5.87025 6.04044 6.19661 6.26376 6.36078 6.74197 6.90555 7.43109 8.94158 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.009903 B = 0.004543 C = 0.003461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2826.793862 B = 6162.215179 C = 8088.530443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.018 3.982 3 Si 0.945 3.055 4 H -0.262 1.262 5 H -0.288 1.288 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.061 0.939 9 C 0.204 3.796 10 N -0.535 5.535 11 C 0.144 3.856 12 C 0.267 3.733 13 N -0.504 5.504 14 C -0.017 4.017 15 C -0.090 4.090 16 C -0.109 4.109 17 C -0.084 4.084 18 C -0.097 4.097 19 C -0.022 4.022 20 O -0.218 6.218 21 C 0.101 3.899 22 C -0.081 4.081 23 C -0.110 4.110 24 C -0.130 4.130 25 C -0.126 4.126 26 C -0.142 4.142 27 C -0.114 4.114 28 H 0.260 0.740 29 H -0.003 1.003 30 H 0.015 0.985 31 H 0.080 0.920 32 H 0.130 0.870 33 H 0.128 0.872 34 H 0.173 0.827 35 H 0.187 0.813 36 H 0.161 0.839 37 H 0.043 0.957 38 H 0.102 0.898 39 H 0.138 0.862 40 H 0.149 0.851 41 H 0.144 0.856 42 H 0.120 0.880 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.132 -14.843 -3.310 15.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.181 4.181 3 Si 0.772 3.228 4 H -0.186 1.186 5 H -0.215 1.215 6 H -0.206 1.206 7 C -0.573 4.573 8 H 0.079 0.921 9 C 0.078 3.922 10 N -0.259 5.259 11 C 0.015 3.985 12 C 0.055 3.945 13 N -0.234 5.234 14 C -0.128 4.128 15 C -0.109 4.109 16 C -0.128 4.128 17 C -0.102 4.102 18 C -0.115 4.115 19 C -0.073 4.073 20 O -0.110 6.110 21 C -0.025 4.025 22 C -0.082 4.082 23 C -0.128 4.128 24 C -0.147 4.147 25 C -0.144 4.144 26 C -0.160 4.160 27 C -0.132 4.132 28 H 0.068 0.932 29 H 0.015 0.985 30 H 0.033 0.967 31 H 0.097 0.903 32 H 0.148 0.852 33 H 0.146 0.854 34 H 0.191 0.809 35 H 0.204 0.796 36 H 0.178 0.822 37 H 0.061 0.939 38 H 0.120 0.880 39 H 0.156 0.844 40 H 0.167 0.833 41 H 0.162 0.838 42 H 0.138 0.862 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.706 -14.526 -3.258 15.131 hybrid contribution 0.443 1.943 -0.025 1.993 sum 3.149 -12.583 -3.283 13.380 Atomic orbital electron populations 1.70100 1.07585 1.27156 1.51639 1.25637 0.95306 1.02245 0.94920 0.85698 0.79478 0.80372 0.77301 1.18569 1.21460 1.20556 1.21774 0.93101 0.92309 1.50081 0.92064 1.19424 0.91259 0.86204 0.95358 1.62399 1.17147 1.45855 1.00501 1.20566 0.92524 1.01674 0.83698 1.26673 0.95194 0.76139 0.96541 1.70805 1.12946 1.34397 1.05273 1.20550 1.03543 0.90349 0.98364 1.20655 0.96509 1.01640 0.92070 1.21488 0.99584 0.91764 0.99916 1.21563 0.95489 0.97751 0.95360 1.20380 0.99683 0.97537 0.93909 1.20984 0.98803 0.97903 0.89568 1.84448 1.58453 1.31158 1.36918 1.20986 0.94016 1.01345 0.86189 1.19808 0.98647 0.93666 0.96035 1.21249 0.98891 0.96058 0.96597 1.21423 0.97118 0.99745 0.96460 1.21391 1.00164 0.92112 1.00768 1.21299 0.98989 0.98470 0.97225 1.21239 0.97114 0.98996 0.95900 0.93153 0.98521 0.96655 0.90263 0.85242 0.85366 0.80933 0.79590 0.82179 0.93891 0.87973 0.84405 0.83310 0.83841 0.86167 0.88342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.52 13.29 21.45 0.28 -56.23 16 2 C 0.02 1.03 5.46 84.65 0.46 1.49 16 3 Si 0.95 44.79 29.54 68.60 2.03 46.82 16 4 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 6 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 7 C -0.53 -29.04 6.88 25.60 0.18 -28.87 16 8 H 0.06 3.20 5.95 -2.91 -0.02 3.19 16 9 C 0.20 10.85 4.58 85.56 0.39 11.24 16 10 N -0.53 -22.59 4.65 -909.93 -4.23 -26.83 16 11 C 0.14 5.49 5.44 85.56 0.47 5.95 16 12 C 0.27 11.20 7.09 88.39 0.63 11.83 16 13 N -0.50 -23.58 10.56 -296.26 -3.13 -26.71 16 14 C -0.02 -0.67 7.24 39.32 0.28 -0.39 16 15 C -0.09 -2.85 10.10 22.46 0.23 -2.62 16 16 C -0.11 -2.30 10.02 22.25 0.22 -2.07 16 17 C -0.08 -1.52 10.03 22.31 0.22 -1.29 16 18 C -0.10 -2.33 10.06 22.30 0.22 -2.11 16 19 C -0.02 -0.79 7.43 22.88 0.17 -0.62 16 20 O -0.22 -8.37 10.77 -9.86 -0.11 -8.47 16 21 C 0.10 3.67 4.91 85.56 0.42 4.09 16 22 C -0.08 -2.98 4.88 -19.87 -0.10 -3.08 16 23 C -0.11 -3.34 9.70 22.27 0.22 -3.12 16 24 C -0.13 -3.50 10.05 22.27 0.22 -3.27 16 25 C -0.13 -3.61 10.05 22.27 0.22 -3.38 16 26 C -0.14 -4.93 10.05 22.27 0.22 -4.71 16 27 C -0.11 -4.60 7.96 22.27 0.18 -4.42 16 28 H 0.26 15.10 8.31 -92.70 -0.77 14.33 16 29 H 0.00 -0.20 6.78 -2.38 -0.02 -0.22 16 30 H 0.02 0.90 6.12 -2.39 -0.01 0.89 16 31 H 0.08 3.29 6.33 -2.39 -0.02 3.27 16 32 H 0.13 3.71 7.82 -2.39 -0.02 3.69 16 33 H 0.13 4.01 8.06 -2.91 -0.02 3.98 16 34 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 35 H 0.19 1.53 8.06 -2.91 -0.02 1.50 16 36 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 37 H 0.04 1.70 6.37 -2.39 -0.02 1.68 16 38 H 0.10 2.88 7.81 -2.39 -0.02 2.86 16 39 H 0.14 3.52 8.06 -2.91 -0.02 3.49 16 40 H 0.15 2.93 8.06 -2.91 -0.02 2.90 16 41 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16 42 H 0.12 3.88 8.06 -2.91 -0.02 3.85 16 43 H 0.10 4.63 7.56 -2.91 -0.02 4.60 16 Total: -1.00 -75.74 359.56 0.73 -75.01 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: 1.02 Total: 21.76 kcal Atomic # 6 Polarization: -30.21 SS G_CDS: 4.86 Total: -25.35 kcal Atomic # 7 Polarization: -102.69 SS G_CDS: -7.08 Total: -109.76 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: -0.11 Total: -8.47 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -75.74 0.73 -75.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232555302.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.358 kcal (2) G-P(sol) polarization free energy of solvation -75.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds