Wall clock time and date at job start Tue Mar 31 2020 13:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.39770 * 120.09696 * 49.57910 * 3 2 1 5 5 C 1.37719 * 119.90533 * 179.70008 * 4 3 2 6 6 C 1.38986 * 120.09126 * 0.54602 * 5 4 3 7 7 O 1.35758 * 119.90157 * 179.72095 * 6 5 4 8 8 C 1.38942 * 120.18950 * 359.45101 * 6 5 4 9 9 C 1.50701 * 119.95286 * 180.25014 * 8 6 5 10 10 N 1.46900 * 109.47126 * 74.82954 * 9 8 6 11 11 C 1.46898 * 111.00504 * 199.50946 * 10 9 8 12 12 C 1.50701 * 109.47005 * 74.92060 * 11 10 9 13 13 H 1.08001 * 120.00003 * 355.31057 * 12 11 10 14 14 C 1.37875 * 120.00145 * 175.30894 * 12 11 10 15 15 N 1.31517 * 119.99857 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 119.99990 * 0.02562 * 14 12 11 17 17 H 1.48494 * 109.47271 * 89.99696 * 16 14 12 18 18 H 1.48499 * 109.47130 * 210.00133 * 16 14 12 19 19 H 1.48500 * 109.46658 * 329.99684 * 16 14 12 20 20 C 1.46900 * 110.99728 * 75.55681 * 10 9 8 21 21 C 1.50700 * 109.47062 * 190.00130 * 20 10 9 22 22 C 1.38237 * 119.99856 * 269.72438 * 21 20 10 23 23 C 1.38240 * 119.99739 * 179.76902 * 22 21 20 24 24 C 1.38231 * 119.99883 * 0.50782 * 23 22 21 25 25 C 1.38227 * 120.00258 * 359.74600 * 24 23 22 26 26 C 1.38234 * 120.00117 * 359.97438 * 25 24 23 27 27 C 1.37753 * 120.09573 * 0.27194 * 8 6 5 28 28 H 1.08005 * 120.04971 * 359.97432 * 4 3 2 29 29 H 1.07994 * 119.95342 * 180.29259 * 5 4 3 30 30 H 0.96702 * 114.00095 * 269.72618 * 7 6 5 31 31 H 1.08996 * 109.47355 * 194.83092 * 9 8 6 32 32 H 1.09004 * 109.47244 * 314.83710 * 9 8 6 33 33 H 1.08996 * 109.47640 * 194.92092 * 11 10 9 34 34 H 1.08998 * 109.46754 * 314.92526 * 11 10 9 35 35 H 0.97004 * 119.99624 * 179.97438 * 15 14 12 36 36 H 1.09002 * 109.47117 * 310.00022 * 20 10 9 37 37 H 1.08999 * 109.47315 * 70.00139 * 20 10 9 38 38 H 1.07999 * 120.00126 * 0.02562 * 22 21 20 39 39 H 1.08002 * 119.99393 * 180.23383 * 23 22 21 40 40 H 1.08008 * 119.99949 * 179.72871 * 24 23 22 41 41 H 1.08004 * 120.00021 * 179.97438 * 25 24 23 42 42 H 1.07999 * 120.00654 * 179.97438 * 26 25 24 43 43 H 1.08003 * 120.04637 * 179.97438 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2692 -0.7831 -0.9206 5 6 4.6464 -0.7748 -0.9212 6 6 5.3389 0.0028 -0.0006 7 8 6.6965 0.0038 -0.0009 8 6 4.6458 0.7835 0.9163 9 6 5.4020 1.6289 1.9084 10 7 5.9608 2.8034 1.2255 11 6 7.0576 3.3932 2.0045 12 6 8.2855 2.5287 1.8774 13 1 8.2338 1.5928 1.3409 14 6 9.4749 2.9326 2.4458 15 7 10.5463 2.1779 2.3353 16 14 9.5642 4.5511 3.3743 17 1 9.2457 4.3188 4.8059 18 1 10.9332 5.1143 3.2567 19 1 8.5846 5.5070 2.7980 20 6 4.9160 3.7987 0.9503 21 6 5.4671 4.8672 0.0416 22 6 6.0649 5.9915 0.5799 23 6 6.5746 6.9694 -0.2537 24 6 6.4772 6.8279 -1.6253 25 6 5.8748 5.7063 -2.1635 26 6 5.3702 4.7256 -1.3300 27 6 3.2682 0.7854 0.9201 28 1 2.7319 -1.3911 -1.6335 29 1 5.1890 -1.3764 -1.6352 30 1 7.0904 -0.6683 0.5721 31 1 4.7253 1.9555 2.6979 32 1 6.2114 1.0424 2.3432 33 1 7.2758 4.3919 1.6265 34 1 6.7653 3.4572 3.0526 35 1 11.3831 2.4623 2.7349 36 1 4.0689 3.3121 0.4669 37 1 4.5894 4.2511 1.8867 38 1 6.1373 6.1039 1.6515 39 1 7.0450 7.8459 0.1668 40 1 6.8716 7.5940 -2.2766 41 1 5.7983 5.5960 -3.2352 42 1 4.8991 3.8494 -1.7504 43 1 2.7302 1.3922 1.6334 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232674361.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:00 Heat of formation + Delta-G solvation = 31.124669 kcal Electronic energy + Delta-G solvation = -26506.270085 eV Core-core repulsion = 22902.126989 eV Total energy + Delta-G solvation = -3604.143096 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.06714 -40.17546 -38.26665 -37.89296 -36.82155 -34.60491 -33.27325 -32.11439 -31.68123 -31.21770 -29.54064 -27.35327 -25.42007 -24.40861 -23.54257 -23.01979 -22.46143 -21.39096 -19.38551 -19.12387 -18.76050 -17.62681 -17.02842 -16.77004 -16.29577 -16.15801 -16.04182 -15.85233 -15.28673 -15.18850 -14.96509 -14.60129 -14.47037 -14.33705 -14.21179 -14.06532 -13.85215 -13.55084 -13.33528 -13.18603 -13.12193 -12.92740 -12.70357 -12.61413 -12.45518 -11.94089 -11.86413 -11.74335 -11.66600 -11.30367 -11.13088 -10.66798 -9.90494 -9.69546 -9.57434 -9.43983 -8.87765 -8.15032 -6.12625 -0.20505 0.35060 0.55515 0.60060 1.35171 1.38944 1.46664 1.63232 1.89615 2.41905 2.78889 2.87765 2.94856 3.19209 3.45294 3.57199 3.84971 3.93522 3.98815 4.04463 4.18999 4.23375 4.32707 4.41862 4.50851 4.60034 4.64855 4.72296 4.74514 4.83904 4.89547 5.03967 5.04733 5.08168 5.21279 5.22790 5.25845 5.32343 5.60274 5.64057 5.68508 5.71773 5.77107 5.82106 6.14153 6.21655 6.46470 6.48232 6.76189 6.98998 7.04089 7.48847 9.00732 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.010165 B = 0.004796 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.005803 B = 5836.933075 C = 7441.337222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C 0.286 3.714 3 C -0.055 4.055 4 C -0.040 4.040 5 C -0.151 4.151 6 C 0.163 3.837 7 O -0.496 6.496 8 C -0.113 4.113 9 C 0.106 3.894 10 N -0.516 5.516 11 C 0.163 3.837 12 C -0.491 4.491 13 H 0.063 0.937 14 C 0.012 3.988 15 N -0.948 5.948 16 Si 0.922 3.078 17 H -0.272 1.272 18 H -0.290 1.290 19 H -0.251 1.251 20 C 0.091 3.909 21 C -0.081 4.081 22 C -0.130 4.130 23 C -0.135 4.135 24 C -0.129 4.129 25 C -0.128 4.128 26 C -0.109 4.109 27 C -0.045 4.045 28 H 0.161 0.839 29 H 0.156 0.844 30 H 0.403 0.597 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.036 0.964 34 H -0.020 1.020 35 H 0.260 0.740 36 H 0.090 0.910 37 H 0.036 0.964 38 H 0.109 0.891 39 H 0.132 0.868 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.126 0.874 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.061 -0.095 -6.370 14.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.144 5.144 2 C -0.028 4.028 3 C -0.058 4.058 4 C -0.060 4.060 5 C -0.169 4.169 6 C 0.117 3.883 7 O -0.309 6.309 8 C -0.114 4.114 9 C -0.022 4.022 10 N -0.239 5.239 11 C 0.037 3.963 12 C -0.530 4.530 13 H 0.081 0.919 14 C -0.185 4.185 15 N -0.590 5.590 16 Si 0.748 3.252 17 H -0.197 1.197 18 H -0.217 1.217 19 H -0.175 1.175 20 C -0.037 4.037 21 C -0.082 4.082 22 C -0.149 4.149 23 C -0.153 4.153 24 C -0.147 4.147 25 C -0.145 4.145 26 C -0.128 4.128 27 C -0.066 4.066 28 H 0.178 0.822 29 H 0.173 0.827 30 H 0.263 0.737 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.054 0.946 34 H -0.002 1.002 35 H 0.069 0.931 36 H 0.109 0.891 37 H 0.054 0.946 38 H 0.127 0.873 39 H 0.150 0.850 40 H 0.162 0.838 41 H 0.161 0.839 42 H 0.144 0.856 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -14.515 0.203 -7.130 16.173 hybrid contribution 1.064 0.526 1.881 2.224 sum -13.451 0.729 -5.250 14.458 Atomic orbital electron populations 1.81271 1.13190 1.10147 1.09774 1.25748 0.92534 0.92236 0.92277 1.15899 0.83379 1.04535 1.02020 1.21218 0.93219 0.95661 0.95923 1.21528 0.94143 1.00619 1.00628 1.18889 0.83640 0.92936 0.92884 1.84902 1.15628 1.60792 1.69563 1.20086 0.93216 0.99631 0.98463 1.20777 0.97170 0.91552 0.92668 1.61828 1.08357 1.05988 1.47727 1.20115 0.90010 0.95985 0.90228 1.21381 0.93029 1.06784 1.31812 0.91881 1.25605 0.95566 0.99759 0.97524 1.70024 1.01322 1.39824 1.47814 0.86080 0.77576 0.81916 0.79625 1.19713 1.21651 1.17454 1.21129 0.94221 0.91524 0.96788 1.19886 0.98759 0.94640 0.94884 1.21183 0.99110 0.94916 0.99649 1.21347 1.00070 0.99433 0.94426 1.21407 0.99490 0.98764 0.95023 1.21424 0.98365 0.94053 1.00689 1.21147 1.00002 0.98913 0.92712 1.21002 0.92363 0.96358 0.96878 0.82151 0.82676 0.73742 0.93482 0.90792 0.94576 1.00229 0.93068 0.89135 0.94604 0.87289 0.84991 0.83843 0.83924 0.85639 0.83983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -12.19 18.54 19.00 0.35 -11.83 16 2 C 0.29 6.14 15.33 88.33 1.35 7.49 16 3 C -0.05 -1.02 5.74 -21.30 -0.12 -1.15 16 4 C -0.04 -0.63 9.75 22.52 0.22 -0.41 16 5 C -0.15 -2.82 9.97 22.33 0.22 -2.60 16 6 C 0.16 4.16 6.68 22.62 0.15 4.31 16 7 O -0.50 -15.54 12.25 -90.84 -1.11 -16.65 16 8 C -0.11 -2.89 4.82 -19.81 -0.10 -2.99 16 9 C 0.11 3.37 4.54 85.56 0.39 3.76 16 10 N -0.52 -19.27 4.34 -909.95 -3.95 -23.22 16 11 C 0.16 7.38 3.67 85.56 0.31 7.69 16 12 C -0.49 -26.66 9.05 25.60 0.23 -26.43 16 13 H 0.06 3.71 7.40 -2.91 -0.02 3.69 16 14 C 0.01 0.67 5.47 84.65 0.46 1.13 16 15 N -0.95 -57.55 13.96 21.45 0.30 -57.25 16 16 Si 0.92 43.34 27.56 68.60 1.89 45.23 16 17 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 18 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 19 H -0.25 -11.04 6.41 99.48 0.64 -10.40 16 20 C 0.09 2.86 4.94 85.56 0.42 3.28 16 21 C -0.08 -2.68 4.94 -19.87 -0.10 -2.77 16 22 C -0.13 -4.31 7.86 22.27 0.18 -4.13 16 23 C -0.13 -3.95 10.05 22.27 0.22 -3.72 16 24 C -0.13 -3.37 10.05 22.27 0.22 -3.15 16 25 C -0.13 -3.39 10.05 22.27 0.22 -3.16 16 26 C -0.11 -3.29 9.70 22.27 0.22 -3.07 16 27 C -0.04 -0.93 8.69 22.52 0.20 -0.73 16 28 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 29 H 0.16 2.32 8.06 -2.91 -0.02 2.30 16 30 H 0.40 10.05 9.06 -74.06 -0.67 9.38 16 31 H 0.05 1.33 7.80 -2.39 -0.02 1.31 16 32 H 0.07 2.73 7.06 -2.38 -0.02 2.71 16 33 H 0.04 1.69 3.74 -2.39 -0.01 1.68 16 34 H -0.02 -0.89 7.67 -2.39 -0.02 -0.91 16 35 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 36 H 0.09 2.48 6.82 -2.39 -0.02 2.46 16 37 H 0.04 1.08 8.06 -2.39 -0.02 1.06 16 38 H 0.11 3.64 7.67 -2.91 -0.02 3.61 16 39 H 0.13 3.28 8.06 -2.91 -0.02 3.26 16 40 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 41 H 0.14 2.94 8.06 -2.91 -0.02 2.91 16 42 H 0.13 3.48 8.06 -2.91 -0.02 3.45 16 43 H 0.14 2.55 7.99 -2.91 -0.02 2.53 16 Total: -1.00 -69.73 368.51 2.49 -67.24 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: 0.30 Total: 23.13 kcal Atomic # 6 Polarization: -31.35 SS G_CDS: 4.71 Total: -26.64 kcal Atomic # 7 Polarization: -89.00 SS G_CDS: -3.30 Total: -92.30 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -1.11 Total: -16.65 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 1.89 Total: 45.23 kcal Total: -69.73 2.49 -67.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232674361.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.363 kcal (2) G-P(sol) polarization free energy of solvation -69.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds