Wall clock time and date at job start Tue Mar 31 2020 13:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 120.00127 * 2 1 4 4 H 1.48509 * 109.46959 * 239.99803 * 3 2 1 5 5 H 1.48504 * 109.47370 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47329 * 119.99922 * 3 2 1 7 7 C 1.38810 * 119.99617 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99928 * 161.04166 * 7 2 1 9 9 N 1.36935 * 120.00490 * 341.04227 * 7 2 1 10 10 C 1.46490 * 119.99870 * 321.95384 * 9 7 2 11 11 C 1.50709 * 109.47246 * 269.99569 * 10 9 7 12 12 C 1.34236 * 126.48931 * 260.02656 * 11 10 9 13 13 N 1.36803 * 109.93562 * 179.97438 * 12 11 10 14 14 H 0.97001 * 125.07500 * 180.02562 * 13 12 11 15 15 C 1.37896 * 109.84970 * 0.02562 * 13 12 11 16 16 C 1.39100 * 133.35766 * 179.97438 * 15 13 12 17 17 C 1.37683 * 119.99448 * 179.20721 * 16 15 13 18 18 C 1.39266 * 120.61916 * 0.70021 * 17 16 15 19 19 O 1.35989 * 119.86829 * 179.55979 * 18 17 16 20 20 C 1.38040 * 120.27059 * 359.53704 * 18 17 16 21 21 C 1.39680 * 119.59936 * 0.02562 * 20 18 17 22 22 C 1.46505 * 120.00063 * 141.94607 * 9 7 2 23 23 C 1.50697 * 109.47279 * 269.92428 * 22 9 7 24 24 C 1.38238 * 120.00027 * 269.68522 * 23 22 9 25 25 C 1.38237 * 119.99593 * 180.32677 * 24 23 22 26 26 C 1.38230 * 120.00384 * 359.94952 * 25 24 23 27 27 C 1.38241 * 120.00115 * 0.02568 * 26 25 24 28 28 C 1.38236 * 119.99690 * 359.97438 * 27 26 25 29 29 H 0.97004 * 119.99960 * 0.02562 * 1 2 3 30 30 H 1.09007 * 109.47430 * 29.99868 * 10 9 7 31 31 H 1.09005 * 109.47817 * 149.99746 * 10 9 7 32 32 H 1.08005 * 125.03515 * 359.95935 * 12 11 10 33 33 H 1.08001 * 120.00261 * 359.97438 * 16 15 13 34 34 H 1.08001 * 119.69269 * 180.24276 * 17 16 15 35 35 H 0.96705 * 114.00319 * 269.98079 * 19 18 17 36 36 H 1.07991 * 120.20199 * 180.02562 * 20 18 17 37 37 H 1.08995 * 109.46582 * 149.92510 * 22 9 7 38 38 H 1.09001 * 109.46942 * 29.92727 * 22 9 7 39 39 H 1.07990 * 119.99696 * 0.27697 * 24 23 22 40 40 H 1.08003 * 119.99181 * 179.97438 * 25 24 23 41 41 H 1.07998 * 120.00158 * 180.02562 * 26 25 24 42 42 H 1.07995 * 119.99895 * 179.97438 * 27 26 25 43 43 H 1.07994 * 119.99737 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0101 -1.2022 0.0005 8 1 3.0462 -1.2277 -0.3033 9 7 1.3812 -2.3557 0.3863 10 6 0.4230 -2.3323 1.4941 11 6 1.1470 -2.5919 2.7902 12 6 1.2067 -3.7586 3.4514 13 7 1.9540 -3.6129 4.5879 14 1 2.1391 -4.3183 5.2276 15 6 2.4051 -2.3137 4.6884 16 6 3.1850 -1.6433 5.6249 17 6 3.4896 -0.3132 5.4415 18 6 3.0116 0.3773 4.3305 19 8 3.3144 1.6931 4.1690 20 6 2.2320 -0.2687 3.3922 21 6 1.9242 -1.6204 3.5635 22 6 1.6664 -3.6133 -0.3090 23 6 0.7104 -3.7778 -1.4622 24 6 -0.4936 -4.4305 -1.2742 25 6 -1.3675 -4.5873 -2.3337 26 6 -1.0380 -4.0906 -3.5809 27 6 0.1658 -3.4374 -3.7688 28 6 1.0397 -3.2806 -2.7093 29 1 -0.4850 0.8401 -0.0004 30 1 -0.0594 -1.3557 1.5367 31 1 -0.3314 -3.1036 1.3386 32 1 0.7344 -4.6764 3.1334 33 1 3.5620 -2.1693 6.4896 34 1 4.0989 0.2015 6.1697 35 1 2.6754 2.2963 4.5729 36 1 1.8622 0.2676 2.5309 37 1 1.5471 -4.4465 0.3836 38 1 2.6895 -3.5968 -0.6847 39 1 -0.7510 -4.8186 -0.2999 40 1 -2.3080 -5.0976 -2.1869 41 1 -1.7210 -4.2127 -4.4085 42 1 0.4233 -3.0497 -4.7433 43 1 1.9803 -2.7707 -2.8562 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232870440.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:49 Heat of formation + Delta-G solvation = 66.372994 kcal Electronic energy + Delta-G solvation = -26899.213741 eV Core-core repulsion = 23296.599127 eV Total energy + Delta-G solvation = -3602.614614 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.68060 -38.48117 -37.93611 -35.63503 -34.74308 -31.96308 -31.68473 -30.16467 -29.99667 -28.60532 -27.93443 -25.56332 -25.27537 -22.48053 -21.90930 -21.79423 -21.30337 -20.16151 -18.87833 -17.53683 -17.44872 -16.53281 -15.94608 -15.61837 -14.95077 -14.71424 -14.37363 -14.35138 -14.24648 -13.93906 -13.71352 -13.21254 -13.12485 -12.79285 -12.66904 -12.31136 -12.22279 -11.95384 -11.75616 -11.38909 -11.09832 -10.79195 -10.74665 -10.67779 -10.61812 -10.33602 -10.16608 -9.99987 -9.95363 -9.65123 -8.98183 -8.47681 -8.17602 -7.95444 -7.59324 -7.00410 -6.58062 -5.77907 -3.34015 1.61650 1.97713 2.13400 2.16042 3.29367 3.41998 3.46664 3.57772 3.60246 4.28178 4.48500 4.60187 4.75519 5.21089 5.33867 5.39285 5.50511 5.53370 5.56592 5.69647 5.79645 5.86225 5.87614 5.94951 6.07084 6.16203 6.26184 6.27787 6.38910 6.45915 6.54421 6.65560 6.78448 6.81219 6.84413 6.97712 7.08681 7.16301 7.17881 7.21277 7.43421 7.52839 7.61059 7.71686 7.78082 7.84073 8.04238 8.20009 8.54016 9.18699 9.79082 10.37779 11.21907 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.013662 B = 0.004885 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.950086 B = 5730.733688 C = 7316.297887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.020 3.980 3 Si 0.872 3.128 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.262 1.262 7 C -0.248 4.248 8 H 0.058 0.942 9 N -0.562 5.562 10 C 0.204 3.796 11 C -0.136 4.136 12 C 0.015 3.985 13 N -0.603 5.603 14 H 0.406 0.594 15 C 0.085 3.915 16 C -0.133 4.133 17 C -0.124 4.124 18 C 0.049 3.951 19 O -0.497 6.497 20 C -0.064 4.064 21 C -0.070 4.070 22 C 0.177 3.823 23 C -0.069 4.069 24 C -0.116 4.116 25 C -0.127 4.127 26 C -0.143 4.143 27 C -0.125 4.125 28 C -0.097 4.097 29 H 0.255 0.745 30 H 0.106 0.894 31 H 0.033 0.967 32 H 0.160 0.840 33 H 0.114 0.886 34 H 0.121 0.879 35 H 0.376 0.624 36 H 0.140 0.860 37 H 0.043 0.957 38 H 0.051 0.949 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.453 -7.080 6.569 9.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.181 4.181 3 Si 0.701 3.299 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.187 1.187 7 C -0.378 4.378 8 H 0.075 0.925 9 N -0.279 5.279 10 C 0.078 3.922 11 C -0.146 4.146 12 C -0.110 4.110 13 N -0.207 5.207 14 H 0.242 0.758 15 C -0.022 4.022 16 C -0.154 4.154 17 C -0.143 4.143 18 C 0.004 3.996 19 O -0.305 6.305 20 C -0.083 4.083 21 C -0.075 4.075 22 C 0.051 3.949 23 C -0.072 4.072 24 C -0.135 4.135 25 C -0.146 4.146 26 C -0.162 4.162 27 C -0.143 4.143 28 C -0.116 4.116 29 H 0.065 0.935 30 H 0.123 0.877 31 H 0.051 0.949 32 H 0.177 0.823 33 H 0.132 0.868 34 H 0.139 0.861 35 H 0.229 0.771 36 H 0.157 0.843 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.830 -7.259 6.306 9.651 hybrid contribution 0.042 0.887 0.440 0.991 sum 0.872 -6.372 6.746 9.321 Atomic orbital electron populations 1.69934 1.05357 1.25735 1.51134 1.25110 0.94902 0.98303 0.99743 0.86885 0.79914 0.83727 0.79410 1.20871 1.21601 1.18714 1.18922 0.92723 0.84852 1.41286 0.92479 1.43797 1.49754 1.03788 1.30578 1.19439 0.89263 1.03005 0.80489 1.21872 1.02891 0.90938 0.98865 1.21554 1.00871 0.99564 0.88982 1.41640 1.47378 1.08810 1.22908 0.75841 1.18317 1.00758 0.85231 0.97925 1.19641 1.02431 0.94294 0.99075 1.20861 1.01715 0.94214 0.97557 1.18103 1.01361 0.84521 0.95639 1.84917 1.51829 1.13847 1.79945 1.21177 0.95049 0.93711 0.98361 1.18937 1.00827 0.93252 0.94505 1.20028 0.95076 0.89801 0.90002 1.20991 0.96715 0.93796 0.95679 1.20884 0.94480 1.00325 0.97817 1.20934 0.98901 1.01175 0.93551 1.20858 0.97167 1.01146 0.96983 1.21012 0.94854 0.99833 0.98626 1.20948 0.99670 0.98422 0.92520 0.93478 0.87702 0.94883 0.82314 0.86802 0.86082 0.77058 0.84280 0.93906 0.93087 0.87339 0.87444 0.87522 0.87366 0.86715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.19 11.35 55.49 0.63 -23.56 16 2 C 0.02 0.53 4.11 -17.43 -0.07 0.46 16 3 Si 0.87 21.22 28.07 -169.99 -4.77 16.45 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 6 H -0.26 -6.43 7.00 56.52 0.40 -6.04 16 7 C -0.25 -6.43 9.47 -15.06 -0.14 -6.57 16 8 H 0.06 1.53 7.90 -52.48 -0.41 1.12 16 9 N -0.56 -13.06 2.39 -175.98 -0.42 -13.48 16 10 C 0.20 4.54 5.81 -5.19 -0.03 4.51 16 11 C -0.14 -2.72 5.90 -102.71 -0.61 -3.33 16 12 C 0.01 0.24 11.73 -16.74 -0.20 0.04 16 13 N -0.60 -8.73 6.08 -10.63 -0.06 -8.80 16 14 H 0.41 4.28 8.96 -40.82 -0.37 3.91 16 15 C 0.08 1.47 7.27 -83.92 -0.61 0.86 16 16 C -0.13 -2.04 10.06 -39.46 -0.40 -2.44 16 17 C -0.12 -1.99 9.95 -39.40 -0.39 -2.38 16 18 C 0.05 0.93 6.69 -39.27 -0.26 0.66 16 19 O -0.50 -8.82 13.50 -19.70 -0.27 -9.09 16 20 C -0.06 -1.38 10.03 -39.12 -0.39 -1.77 16 21 C -0.07 -1.43 6.35 -105.14 -0.67 -2.10 16 22 C 0.18 3.59 5.79 -5.19 -0.03 3.55 16 23 C -0.07 -1.36 5.46 -104.62 -0.57 -1.93 16 24 C -0.12 -2.12 9.70 -39.58 -0.38 -2.50 16 25 C -0.13 -2.15 10.05 -39.58 -0.40 -2.55 16 26 C -0.14 -2.39 10.05 -39.58 -0.40 -2.79 16 27 C -0.13 -2.22 10.05 -39.58 -0.40 -2.62 16 28 C -0.10 -1.91 9.70 -39.58 -0.38 -2.29 16 29 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 30 H 0.11 2.70 5.45 -51.93 -0.28 2.42 16 31 H 0.03 0.69 8.07 -51.93 -0.42 0.27 16 32 H 0.16 2.04 8.06 -52.48 -0.42 1.62 16 33 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 34 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 35 H 0.38 4.70 9.07 45.56 0.41 5.11 16 36 H 0.14 3.33 5.20 -52.49 -0.27 3.05 16 37 H 0.04 0.78 8.01 -51.93 -0.42 0.36 16 38 H 0.05 1.03 7.98 -51.93 -0.41 0.62 16 39 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 40 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 41 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 42 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 43 H 0.11 2.26 8.06 -52.49 -0.42 1.84 16 LS Contribution 364.20 15.07 5.49 5.49 Total: -1.00 -31.18 364.20 -10.43 -41.62 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: -4.70 Total: 14.55 kcal Atomic # 6 Polarization: -16.85 SS G_CDS: -6.33 Total: -23.18 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: 0.14 Total: -45.84 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: -0.27 Total: -9.09 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.77 Total: 16.45 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.18 -10.43 -41.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232870440.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.990 kcal (2) G-P(sol) polarization free energy of solvation -31.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds