Wall clock time and date at job start Tue Mar 31 2020 13:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 119.99947 * 2 1 4 4 H 1.48500 * 109.47159 * 239.99639 * 3 2 1 5 5 H 1.48499 * 109.47370 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47099 * 120.00347 * 3 2 1 7 7 C 1.37874 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00315 * 179.97438 * 7 2 1 9 9 C 1.50710 * 120.00149 * 359.97438 * 7 2 1 10 10 N 1.46894 * 109.47001 * 179.97438 * 9 7 2 11 11 C 1.46904 * 111.00198 * 70.00303 * 10 9 7 12 12 C 1.50701 * 109.46874 * 293.95144 * 11 10 9 13 13 C 1.38235 * 119.99808 * 89.99842 * 12 11 10 14 14 C 1.38243 * 119.99602 * 179.97438 * 13 12 11 15 15 C 1.38232 * 120.00069 * 0.09581 * 14 13 12 16 16 C 1.38234 * 119.99866 * 359.86117 * 15 14 13 17 17 C 1.38230 * 119.99865 * 269.97587 * 12 11 10 18 18 C 1.46899 * 110.99931 * 193.95487 * 10 9 7 19 19 C 1.50703 * 109.47337 * 66.04578 * 18 10 9 20 20 C 1.38720 * 119.75779 * 90.00092 * 19 18 10 21 21 C 1.37684 * 120.41739 * 179.97438 * 20 19 18 22 22 C 1.39584 * 119.72871 * 0.02562 * 21 20 19 23 23 N 1.36066 * 133.79967 * 180.02562 * 22 21 20 24 24 C 1.29903 * 108.79595 * 179.97438 * 23 22 21 25 25 O 1.34230 * 110.29311 * 0.02562 * 24 23 22 26 26 C 1.35117 * 108.15879 * 359.97438 * 25 24 23 27 27 C 1.37909 * 119.76320 * 269.72907 * 19 18 10 28 28 H 0.96996 * 120.00298 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.46965 * 59.99830 * 9 7 2 30 30 H 1.08997 * 109.46602 * 300.00150 * 9 7 2 31 31 H 1.08993 * 109.47642 * 173.94709 * 11 10 9 32 32 H 1.09001 * 109.46800 * 53.94480 * 11 10 9 33 33 H 1.08000 * 120.00616 * 359.70324 * 13 12 11 34 34 H 1.08001 * 119.99556 * 179.97438 * 14 13 12 35 35 H 1.07997 * 119.99666 * 179.97438 * 15 14 13 36 36 H 1.08000 * 119.99729 * 180.02562 * 16 15 14 37 37 H 1.08001 * 120.00371 * 0.02562 * 17 12 11 38 38 H 1.09002 * 109.47174 * 186.05147 * 18 10 9 39 39 H 1.09008 * 109.47008 * 306.04884 * 18 10 9 40 40 H 1.07998 * 119.79150 * 359.97438 * 20 19 18 41 41 H 1.07994 * 120.13278 * 180.02562 * 21 20 19 42 42 H 1.08004 * 124.85575 * 179.97438 * 24 23 22 43 43 H 1.08004 * 120.05942 * 0.02562 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0018 11 6 2.9052 -3.7117 1.2864 12 6 3.7754 -2.4962 1.4771 13 6 3.2659 -1.3723 2.1002 14 6 4.0644 -0.2575 2.2756 15 6 5.3716 -0.2660 1.8262 16 6 5.8813 -1.3902 1.2039 17 6 5.0832 -2.5053 1.0294 18 6 1.5358 -4.8806 -0.3326 19 6 1.0413 -4.8302 -1.7552 20 6 1.8633 -5.2625 -2.7856 21 6 1.4251 -5.2229 -4.0903 22 6 0.1456 -4.7440 -4.3765 23 7 -0.5637 -4.5812 -5.5262 24 6 -1.7291 -4.0881 -5.2327 25 8 -1.8377 -3.9073 -3.9071 26 6 -0.6824 -4.3068 -3.3316 27 6 -0.2272 -4.3598 -2.0228 28 1 -0.4850 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8897 31 1 3.5254 -4.6079 1.2972 32 1 2.1745 -3.7656 2.0935 33 1 2.2429 -1.3635 2.4461 34 1 3.6663 0.6207 2.7621 35 1 5.9952 0.6051 1.9629 36 1 6.9027 -1.3970 0.8532 37 1 5.4812 -3.3834 0.5426 38 1 2.2406 -5.7047 -0.2218 39 1 0.6917 -5.0316 0.3404 40 1 2.8532 -5.6325 -2.5631 41 1 2.0687 -5.5611 -4.8888 42 1 -2.5001 -3.8558 -5.9525 43 1 -0.8630 -4.0286 -1.2150 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232939661.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:57 Heat of formation + Delta-G solvation = 67.940967 kcal Electronic energy + Delta-G solvation = -26910.020172 eV Core-core repulsion = 23307.473551 eV Total energy + Delta-G solvation = -3602.546622 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.17773 -40.53239 -39.48936 -37.49087 -35.68843 -34.65305 -32.83042 -31.62641 -31.56297 -30.93763 -29.33622 -27.15464 -25.55838 -24.54174 -23.79645 -23.15172 -22.79196 -22.21814 -21.30103 -18.83337 -18.60669 -18.29469 -17.64895 -17.48381 -16.77880 -16.72301 -16.22016 -15.90685 -15.71375 -15.50758 -15.09965 -14.87774 -14.67201 -14.22134 -14.04415 -13.79939 -13.62220 -13.42831 -13.27680 -13.03623 -12.88883 -12.66571 -12.53791 -12.44359 -12.42719 -12.22073 -11.76527 -11.58182 -11.49495 -11.33472 -11.18538 -10.52360 -9.74762 -9.43598 -9.38074 -9.06772 -8.96596 -8.13817 -6.06043 -0.26397 0.27504 0.75787 0.88929 1.39680 1.41449 1.46271 1.47301 1.69112 2.43360 2.61944 3.09568 3.10200 3.28701 3.54636 3.66455 3.83684 4.04408 4.17738 4.24705 4.25175 4.27833 4.40405 4.41631 4.50605 4.62536 4.63938 4.71520 4.78382 4.95782 4.98289 5.02162 5.06226 5.21125 5.24918 5.31314 5.35506 5.43777 5.47790 5.54924 5.72728 5.77370 5.86208 5.93266 6.06753 6.17737 6.37742 6.45864 6.57738 6.66377 6.99591 7.50820 8.96387 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.014231 B = 0.004376 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.001590 B = 6396.469675 C = 7477.219856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.010 3.990 3 Si 0.916 3.084 4 H -0.286 1.286 5 H -0.302 1.302 6 H -0.225 1.225 7 C -0.480 4.480 8 H 0.085 0.915 9 C 0.199 3.801 10 N -0.529 5.529 11 C 0.106 3.894 12 C -0.078 4.078 13 C -0.042 4.042 14 C -0.163 4.163 15 C -0.131 4.131 16 C -0.148 4.148 17 C -0.108 4.108 18 C 0.093 3.907 19 C -0.043 4.043 20 C -0.088 4.088 21 C -0.073 4.073 22 C -0.004 4.004 23 N -0.515 5.515 24 C 0.237 3.763 25 O -0.235 6.235 26 C -0.017 4.017 27 C -0.096 4.096 28 H 0.255 0.745 29 H 0.015 0.985 30 H -0.041 1.041 31 H 0.104 0.896 32 H 0.023 0.977 33 H 0.088 0.912 34 H 0.105 0.895 35 H 0.127 0.873 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.120 0.880 39 H 0.033 0.967 40 H 0.170 0.830 41 H 0.157 0.843 42 H 0.307 0.693 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.047 -10.942 -2.587 12.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.187 4.187 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.229 1.229 6 H -0.149 1.149 7 C -0.517 4.517 8 H 0.103 0.897 9 C 0.073 3.927 10 N -0.253 5.253 11 C -0.021 4.021 12 C -0.079 4.079 13 C -0.061 4.061 14 C -0.181 4.181 15 C -0.149 4.149 16 C -0.166 4.166 17 C -0.126 4.126 18 C -0.034 4.034 19 C -0.043 4.043 20 C -0.107 4.107 21 C -0.091 4.091 22 C -0.114 4.114 23 N -0.244 5.244 24 C 0.007 3.993 25 O -0.126 6.126 26 C -0.067 4.067 27 C -0.116 4.116 28 H 0.064 0.936 29 H 0.033 0.967 30 H -0.023 1.023 31 H 0.123 0.877 32 H 0.041 0.959 33 H 0.106 0.894 34 H 0.123 0.877 35 H 0.145 0.855 36 H 0.156 0.844 37 H 0.154 0.846 38 H 0.138 0.862 39 H 0.051 0.949 40 H 0.187 0.813 41 H 0.175 0.825 42 H 0.321 0.679 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.477 -10.904 -3.505 12.696 hybrid contribution -1.703 1.775 1.046 2.673 sum 3.774 -9.130 -2.459 10.180 Atomic orbital electron populations 1.70080 1.07485 1.26912 1.53218 1.25535 0.95070 1.01894 0.96206 0.86289 0.78945 0.79941 0.80537 1.21227 1.22945 1.14878 1.21843 0.94658 0.90088 1.45148 0.89736 1.19580 0.90207 0.89035 0.93899 1.62170 1.29692 1.02909 1.30563 1.20954 0.95448 0.96342 0.89328 1.19575 0.94548 0.95770 0.97996 1.20674 0.96686 0.93226 0.95541 1.21025 0.95265 0.97824 1.03990 1.21193 0.95255 0.98944 0.99549 1.21195 1.00661 0.93503 1.01261 1.21066 0.93136 0.99251 0.99157 1.21135 0.98237 0.93684 0.90331 1.19756 0.91237 0.96135 0.97211 1.21211 1.00475 0.98776 0.90288 1.20591 0.91902 0.98674 0.97972 1.20197 0.97920 1.05228 0.88049 1.70562 1.05476 1.20300 1.28025 1.29446 0.96723 0.92362 0.80794 1.84522 1.35742 1.68891 1.23491 1.20456 0.86104 1.03679 0.96419 1.19856 0.97572 1.02476 0.91681 0.93607 0.96666 1.02312 0.87746 0.95890 0.89379 0.87700 0.85493 0.84354 0.84603 0.86237 0.94856 0.81263 0.82514 0.67856 0.86885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.10 13.29 21.45 0.28 -55.81 16 2 C 0.01 0.57 5.44 84.65 0.46 1.03 16 3 Si 0.92 44.02 28.30 68.60 1.94 45.96 16 4 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 5 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 6 H -0.23 -9.72 4.87 99.48 0.48 -9.23 16 7 C -0.48 -25.31 5.37 25.60 0.14 -25.17 16 8 H 0.08 4.40 4.72 -2.91 -0.01 4.38 16 9 C 0.20 9.82 4.48 85.56 0.38 10.20 16 10 N -0.53 -20.05 4.55 -909.93 -4.14 -24.19 16 11 C 0.11 3.54 5.12 85.56 0.44 3.97 16 12 C -0.08 -2.84 3.46 -19.87 -0.07 -2.91 16 13 C -0.04 -1.72 5.89 22.27 0.13 -1.59 16 14 C -0.16 -6.19 7.51 22.27 0.17 -6.02 16 15 C -0.13 -4.34 10.05 22.27 0.22 -4.12 16 16 C -0.15 -4.50 10.05 22.27 0.22 -4.28 16 17 C -0.11 -3.41 9.50 22.27 0.21 -3.20 16 18 C 0.09 2.84 5.11 85.56 0.44 3.27 16 19 C -0.04 -1.39 4.93 -19.83 -0.10 -1.49 16 20 C -0.09 -2.43 9.67 22.25 0.22 -2.21 16 21 C -0.07 -2.10 10.10 22.46 0.23 -1.88 16 22 C 0.00 -0.12 7.24 39.31 0.28 0.16 16 23 N -0.51 -16.02 11.34 -308.43 -3.50 -19.51 16 24 C 0.24 5.96 13.12 130.53 1.71 7.67 16 25 O -0.23 -7.90 10.77 -9.97 -0.11 -8.00 16 26 C -0.02 -0.63 7.43 22.88 0.17 -0.46 16 27 C -0.10 -3.62 7.84 22.29 0.17 -3.45 16 28 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 29 H 0.02 0.83 5.25 -2.39 -0.01 0.82 16 30 H -0.04 -2.23 7.99 -2.39 -0.02 -2.25 16 31 H 0.10 2.64 7.87 -2.39 -0.02 2.62 16 32 H 0.02 0.80 7.96 -2.39 -0.02 0.78 16 33 H 0.09 4.03 7.66 -2.91 -0.02 4.01 16 34 H 0.10 3.94 7.11 -2.91 -0.02 3.92 16 35 H 0.13 3.54 8.06 -2.91 -0.02 3.52 16 36 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 37 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 38 H 0.12 2.64 7.87 -2.39 -0.02 2.62 16 39 H 0.03 1.04 8.06 -2.38 -0.02 1.02 16 40 H 0.17 3.43 8.06 -2.91 -0.02 3.40 16 41 H 0.16 3.61 8.06 -2.91 -0.02 3.58 16 42 H 0.31 3.25 8.06 -2.91 -0.02 3.22 16 43 H 0.11 4.57 7.79 -2.91 -0.02 4.54 16 Total: -1.00 -72.29 348.54 0.71 -71.58 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: 0.80 Total: 20.43 kcal Atomic # 6 Polarization: -35.88 SS G_CDS: 5.43 Total: -30.45 kcal Atomic # 7 Polarization: -92.17 SS G_CDS: -7.35 Total: -99.52 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: -0.11 Total: -8.00 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.94 Total: 45.96 kcal Total: -72.29 0.71 -71.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232939661.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.523 kcal (2) G-P(sol) polarization free energy of solvation -72.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds