Wall clock time and date at job start Tue Mar 31 2020 13:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.39664 * 120.12791 * 343.64471 * 3 2 1 5 5 C 1.37947 * 119.96122 * 179.72013 * 4 3 2 6 6 C 1.38292 * 120.21309 * 0.51612 * 5 4 3 7 7 C 1.50700 * 119.87495 * 179.76579 * 6 5 4 8 8 N 1.46901 * 109.46640 * 254.37785 * 7 6 5 9 9 C 1.46904 * 110.99880 * 199.25300 * 8 7 6 10 10 C 1.50703 * 109.46845 * 71.08257 * 9 8 7 11 11 H 1.07999 * 119.99829 * 4.44150 * 10 9 8 12 12 C 1.37873 * 119.99798 * 184.45460 * 10 9 8 13 13 N 1.31521 * 119.99831 * 179.97438 * 12 10 9 14 14 Si 1.86794 * 120.00362 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47375 * 90.00212 * 14 12 10 16 16 H 1.48496 * 109.47497 * 210.00403 * 14 12 10 17 17 H 1.48500 * 109.47079 * 330.00319 * 14 12 10 18 18 C 1.46903 * 110.99819 * 75.30622 * 8 7 6 19 19 C 1.50699 * 109.47060 * 189.99680 * 18 8 7 20 20 C 1.38238 * 120.00082 * 89.99845 * 19 18 8 21 21 C 1.38230 * 120.00234 * 179.97438 * 20 19 18 22 22 C 1.38240 * 120.00108 * 0.09072 * 21 20 19 23 23 C 1.38236 * 119.99375 * 359.86608 * 22 21 20 24 24 C 1.38227 * 120.00540 * 0.09035 * 23 22 21 25 25 C 1.38818 * 120.24950 * 359.48030 * 6 5 4 26 26 O 1.35904 * 119.98377 * 180.28525 * 25 6 5 27 27 C 1.38479 * 120.03554 * 0.25899 * 25 6 5 28 28 H 1.08005 * 120.01852 * 359.97438 * 4 3 2 29 29 H 1.08001 * 119.89686 * 180.27592 * 5 4 3 30 30 H 1.09002 * 109.47214 * 134.38579 * 7 6 5 31 31 H 1.08997 * 109.47498 * 14.37877 * 7 6 5 32 32 H 1.09005 * 109.47035 * 191.07486 * 9 8 7 33 33 H 1.08997 * 109.47173 * 311.07884 * 9 8 7 34 34 H 0.97002 * 119.99892 * 179.97438 * 13 12 10 35 35 H 1.09003 * 109.47093 * 69.99280 * 18 8 7 36 36 H 1.08998 * 109.47020 * 309.99825 * 18 8 7 37 37 H 1.08002 * 119.99286 * 359.70055 * 20 19 18 38 38 H 1.07994 * 119.99997 * 179.97438 * 21 20 19 39 39 H 1.07994 * 119.99947 * 179.97438 * 22 21 20 40 40 H 1.08004 * 119.99758 * 180.02562 * 23 22 21 41 41 H 1.08004 * 120.00151 * 179.97438 * 24 23 22 42 42 H 0.96700 * 114.00718 * 90.00141 * 26 25 6 43 43 H 1.08001 * 120.10735 * 179.97438 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2695 -1.1581 0.3402 5 6 4.6490 -1.1553 0.3334 6 6 5.3409 -0.0050 0.0010 7 6 6.8479 -0.0090 0.0013 8 7 7.3392 0.7179 1.1795 9 6 8.7365 1.1330 0.9971 10 6 8.8027 2.2389 -0.0245 11 1 7.8924 2.6467 -0.4386 12 6 10.0254 2.7298 -0.4307 13 7 10.0832 3.6945 -1.3227 14 14 11.5998 2.0247 0.2857 15 1 12.0581 0.8865 -0.5508 16 1 12.6481 3.0762 0.3078 17 1 11.3450 1.5506 1.6697 18 6 7.1843 -0.0883 2.3978 19 6 7.4645 0.7680 3.6058 20 6 6.4362 1.4639 4.2133 21 6 6.6931 2.2490 5.3217 22 6 7.9788 2.3397 5.8215 23 6 9.0069 1.6430 5.2144 24 6 8.7499 0.8573 4.1067 25 6 4.6526 1.1517 -0.3385 26 8 5.3380 2.2774 -0.6699 27 6 3.2678 1.1589 -0.3404 28 1 2.7323 -2.0571 0.6043 29 1 5.1904 -2.0532 0.5923 30 1 7.2127 0.4771 -0.9036 31 1 7.2086 -1.0371 0.0321 32 1 9.1361 1.4907 1.9461 33 1 9.3258 0.2835 0.6518 34 1 10.9434 4.0402 -1.6083 35 1 7.8855 -0.9225 2.3731 36 1 6.1655 -0.4717 2.4526 37 1 5.4328 1.3977 3.8192 38 1 5.8897 2.7929 5.7960 39 1 8.1795 2.9533 6.6872 40 1 10.0113 1.7135 5.6051 41 1 9.5533 0.3134 3.6322 42 1 5.5359 2.3542 -1.6133 43 1 2.7311 2.0583 -0.6040 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233382965.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:03 Heat of formation + Delta-G solvation = 30.827461 kcal Electronic energy + Delta-G solvation = -26413.321505 eV Core-core repulsion = 22809.165521 eV Total energy + Delta-G solvation = -3604.155984 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.05324 -40.16161 -38.26779 -37.82266 -36.91211 -34.60156 -33.29731 -32.15487 -31.67265 -30.85643 -29.59350 -27.66958 -25.61652 -23.75045 -23.56878 -23.13861 -22.46397 -21.21537 -20.35205 -18.84002 -17.89489 -17.60936 -17.02599 -16.92618 -16.66945 -16.13933 -15.82677 -15.77748 -15.35063 -15.21901 -14.96175 -14.65048 -14.57330 -14.34470 -14.19327 -14.07327 -13.86131 -13.58405 -13.32590 -13.15697 -13.00214 -12.83681 -12.74643 -12.49968 -12.39371 -11.88978 -11.85414 -11.73873 -11.65117 -11.35290 -11.19621 -10.66612 -9.86829 -9.68437 -9.57274 -9.44714 -8.85439 -8.15254 -6.13375 -0.23326 0.37511 0.55667 0.61547 1.35568 1.39526 1.47752 1.58867 1.88516 2.41969 2.79257 2.80327 2.95529 3.19268 3.54323 3.57626 3.90640 3.95354 4.02100 4.07341 4.15571 4.25180 4.34501 4.42633 4.50929 4.62488 4.67923 4.70084 4.77147 4.85279 4.94353 4.99427 5.06893 5.18261 5.23100 5.24933 5.26883 5.32175 5.62144 5.65621 5.70096 5.72131 5.79327 5.83796 6.15188 6.23075 6.42019 6.49686 6.77726 6.99470 7.04079 7.48723 9.00595 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.010163 B = 0.004647 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2754.382298 B = 6023.791272 C = 7810.855114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C 0.284 3.716 3 C -0.025 4.025 4 C -0.067 4.067 5 C -0.096 4.096 6 C -0.073 4.073 7 C 0.100 3.900 8 N -0.518 5.518 9 C 0.168 3.832 10 C -0.495 4.495 11 H 0.061 0.939 12 C 0.011 3.989 13 N -0.948 5.948 14 Si 0.926 3.074 15 H -0.270 1.270 16 H -0.291 1.291 17 H -0.252 1.252 18 C 0.090 3.910 19 C -0.080 4.080 20 C -0.110 4.110 21 C -0.129 4.129 22 C -0.129 4.129 23 C -0.135 4.135 24 C -0.129 4.129 25 C 0.122 3.878 26 O -0.495 6.495 27 C -0.103 4.103 28 H 0.162 0.838 29 H 0.160 0.840 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.032 0.968 33 H -0.017 1.017 34 H 0.261 0.739 35 H 0.039 0.961 36 H 0.095 0.905 37 H 0.125 0.875 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.133 0.867 41 H 0.111 0.889 42 H 0.398 0.602 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.202 -11.535 8.402 16.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.139 5.139 2 C -0.030 4.030 3 C -0.028 4.028 4 C -0.087 4.087 5 C -0.114 4.114 6 C -0.075 4.075 7 C -0.027 4.027 8 N -0.241 5.241 9 C 0.041 3.959 10 C -0.533 4.533 11 H 0.079 0.921 12 C -0.186 4.186 13 N -0.590 5.590 14 Si 0.752 3.248 15 H -0.195 1.195 16 H -0.217 1.217 17 H -0.176 1.176 18 C -0.037 4.037 19 C -0.081 4.081 20 C -0.128 4.128 21 C -0.147 4.147 22 C -0.147 4.147 23 C -0.152 4.152 24 C -0.148 4.148 25 C 0.077 3.923 26 O -0.307 6.307 27 C -0.124 4.124 28 H 0.179 0.821 29 H 0.177 0.823 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.050 0.950 33 H 0.000 1.000 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.113 0.887 37 H 0.143 0.857 38 H 0.158 0.842 39 H 0.160 0.840 40 H 0.151 0.849 41 H 0.129 0.871 42 H 0.256 0.744 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.146 -10.896 8.946 17.369 hybrid contribution 2.088 -0.241 -0.855 2.270 sum -8.057 -11.136 8.091 15.950 Atomic orbital electron populations 1.81266 1.13156 1.08908 1.10592 1.25777 0.92588 0.92372 0.92278 1.15751 0.83307 0.96003 1.07783 1.21335 0.93797 0.96959 0.96654 1.21141 0.93579 0.97855 0.98858 1.20604 0.95840 0.93235 0.97807 1.20851 0.90385 0.96772 0.94665 1.61789 1.21238 1.40017 1.01093 1.20049 0.85687 0.93718 0.96436 1.21388 0.93469 1.17216 1.21264 0.92101 1.25641 1.01973 0.95481 0.95469 1.70034 1.25797 1.29426 1.33763 0.86025 0.80138 0.78330 0.80351 1.19496 1.21739 1.17606 1.21157 1.01905 0.92874 0.87753 1.19897 0.93564 0.98664 0.95933 1.21143 0.99172 0.96700 0.95799 1.21414 0.97674 0.98910 0.96699 1.21400 0.92878 0.99622 1.00847 1.21348 1.00117 0.97520 0.96258 1.21196 0.96317 1.00321 0.96948 1.18246 0.89100 0.86068 0.98909 1.84989 1.75747 1.38798 1.31128 1.21447 0.93185 0.97884 0.99894 0.82055 0.82268 0.90951 0.92835 0.95009 0.99970 0.93051 0.94256 0.88675 0.85737 0.84174 0.83973 0.84942 0.87141 0.74386 0.84300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -12.27 18.54 19.00 0.35 -11.92 16 2 C 0.28 6.26 15.33 88.33 1.35 7.61 16 3 C -0.02 -0.48 5.73 -21.38 -0.12 -0.60 16 4 C -0.07 -1.02 9.75 22.55 0.22 -0.80 16 5 C -0.10 -1.65 8.99 22.21 0.20 -1.45 16 6 C -0.07 -1.82 4.81 -19.71 -0.09 -1.91 16 7 C 0.10 3.12 4.56 85.56 0.39 3.51 16 8 N -0.52 -18.88 4.37 -909.91 -3.98 -22.86 16 9 C 0.17 7.47 3.62 85.56 0.31 7.78 16 10 C -0.49 -26.74 8.82 25.60 0.23 -26.51 16 11 H 0.06 3.61 7.46 -2.91 -0.02 3.59 16 12 C 0.01 0.60 5.47 84.65 0.46 1.07 16 13 N -0.95 -57.48 13.96 21.45 0.30 -57.18 16 14 Si 0.93 42.96 27.38 68.60 1.88 44.84 16 15 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 16 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 17 H -0.25 -10.95 6.67 99.48 0.66 -10.28 16 18 C 0.09 2.68 4.95 85.56 0.42 3.10 16 19 C -0.08 -2.53 4.93 -19.87 -0.10 -2.63 16 20 C -0.11 -3.21 9.70 22.27 0.22 -2.99 16 21 C -0.13 -3.37 10.05 22.27 0.22 -3.14 16 22 C -0.13 -3.30 10.05 22.27 0.22 -3.08 16 23 C -0.13 -3.80 10.05 22.27 0.22 -3.57 16 24 C -0.13 -4.11 7.85 22.27 0.17 -3.94 16 25 C 0.12 3.29 6.67 22.47 0.15 3.44 16 26 O -0.50 -16.36 12.28 -92.47 -1.14 -17.49 16 27 C -0.10 -2.30 9.69 22.64 0.22 -2.08 16 28 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 29 H 0.16 1.91 7.99 -2.91 -0.02 1.89 16 30 H 0.07 2.69 6.92 -2.39 -0.02 2.67 16 31 H 0.05 1.42 7.80 -2.39 -0.02 1.40 16 32 H 0.03 1.47 4.55 -2.38 -0.01 1.46 16 33 H -0.02 -0.76 7.25 -2.39 -0.02 -0.78 16 34 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 35 H 0.04 1.10 8.07 -2.39 -0.02 1.08 16 36 H 0.10 2.37 6.82 -2.39 -0.02 2.35 16 37 H 0.12 3.38 8.06 -2.91 -0.02 3.35 16 38 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 39 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 40 H 0.13 3.15 8.06 -2.91 -0.02 3.13 16 41 H 0.11 3.52 7.75 -2.91 -0.02 3.50 16 42 H 0.40 10.80 9.06 -74.06 -0.67 10.13 16 43 H 0.14 2.91 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -69.74 368.74 2.45 -67.30 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: 0.33 Total: 23.50 kcal Atomic # 6 Polarization: -30.89 SS G_CDS: 4.70 Total: -26.19 kcal Atomic # 7 Polarization: -88.64 SS G_CDS: -3.33 Total: -91.96 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -1.14 Total: -17.49 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 1.88 Total: 44.84 kcal Total: -69.74 2.45 -67.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233382965.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.124 kcal (2) G-P(sol) polarization free energy of solvation -69.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds