Wall clock time and date at job start Tue Mar 31 2020 13:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46897 * 110.99802 * 2 1 4 4 C 1.39168 * 110.99804 * 123.95708 * 2 1 3 5 5 C 1.39539 * 120.85680 * 299.71473 * 4 2 1 6 6 C 1.37839 * 119.09735 * 180.30017 * 5 4 2 7 7 N 1.32031 * 120.86479 * 359.97438 * 6 5 4 8 8 C 1.32078 * 121.88732 * 359.97438 * 7 6 5 9 9 Cl 1.73604 * 119.59559 * 180.02562 * 8 7 6 10 10 C 1.38089 * 120.80948 * 0.02621 * 8 7 6 11 11 C 1.50695 * 120.46890 * 179.97438 * 10 8 7 12 12 N 1.46906 * 109.47139 * 270.01957 * 11 10 8 13 13 C 1.46892 * 111.00178 * 190.00260 * 12 11 10 14 14 C 1.50710 * 109.47257 * 159.81728 * 13 12 11 15 15 H 1.08000 * 119.99301 * 357.63602 * 14 13 12 16 16 C 1.37878 * 120.00266 * 177.63336 * 14 13 12 17 17 N 1.31515 * 119.99414 * 0.02562 * 16 14 13 18 18 Si 1.86791 * 120.00030 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47248 * 60.00205 * 18 16 14 20 20 H 1.48495 * 109.47198 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47324 * 300.00265 * 18 16 14 22 22 C 1.46895 * 110.99865 * 66.04671 * 12 11 10 23 23 C 1.53006 * 109.47341 * 195.54824 * 22 12 11 24 24 C 1.47196 * 109.47312 * 173.96879 * 23 22 12 25 25 N 7.46605 * 163.37664 * 143.10050 * 2 1 3 26 26 H 1.09000 * 109.46620 * 296.04303 * 1 2 3 27 27 H 1.08998 * 109.47135 * 56.04389 * 1 2 3 28 28 H 1.08994 * 109.47207 * 176.04619 * 1 2 3 29 29 H 1.09008 * 109.46879 * 183.95301 * 3 2 1 30 30 H 1.08997 * 109.47167 * 303.95155 * 3 2 1 31 31 H 1.09000 * 109.47397 * 63.95847 * 3 2 1 32 32 H 1.07996 * 120.45191 * 0.25373 * 5 4 2 33 33 H 1.08005 * 119.57093 * 180.02562 * 6 5 4 34 34 H 1.08994 * 109.47551 * 30.01807 * 11 10 8 35 35 H 1.09001 * 109.47481 * 150.02573 * 11 10 8 36 36 H 1.08997 * 109.47284 * 279.81680 * 13 12 11 37 37 H 1.09003 * 109.47116 * 39.82036 * 13 12 11 38 38 H 0.97005 * 119.99132 * 179.97438 * 17 16 14 39 39 H 1.08999 * 109.47573 * 315.54919 * 22 12 11 40 40 H 1.08998 * 109.47133 * 75.54999 * 22 12 11 41 41 H 1.09002 * 109.46976 * 293.96980 * 23 22 12 42 42 H 1.08999 * 109.46795 * 53.97060 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9678 -0.7257 1.0777 5 6 1.6699 -0.3549 2.3895 6 6 2.1883 -1.0959 3.4297 7 7 2.9567 -2.1442 3.1975 8 6 3.2611 -2.5282 1.9710 9 17 4.2764 -3.9163 1.7343 10 6 2.7816 -1.8390 0.8747 11 6 3.1342 -2.2835 -0.5214 12 7 4.3684 -1.6129 -0.9518 13 6 4.6160 -1.8338 -2.3827 14 6 5.5579 -0.7764 -2.8987 15 1 5.9047 0.0058 -2.2397 16 6 5.9769 -0.8078 -4.2119 17 7 5.5542 -1.7601 -5.0143 18 14 7.1437 0.5032 -4.8515 19 1 8.4066 0.4653 -4.0710 20 1 7.4388 0.2469 -6.2841 21 1 6.5131 1.8399 -4.7079 22 6 5.5149 -2.0520 -0.1452 23 6 6.6797 -1.0797 -0.3426 24 6 7.7762 -1.4354 0.5728 25 7 8.6231 -1.7080 1.2824 26 1 -0.3632 0.4512 0.9233 27 1 -0.3633 0.5740 -0.8524 28 1 -0.3633 -1.0252 -0.0709 29 1 3.0829 1.3432 -0.0709 30 1 1.5899 1.9163 -0.8524 31 1 1.7045 1.8723 0.9233 32 1 1.0424 0.5016 2.5871 33 1 1.9623 -0.8159 4.4481 34 1 3.2847 -3.3630 -0.5319 35 1 2.3232 -2.0230 -1.2015 36 1 5.0611 -2.8183 -2.5268 37 1 3.6735 -1.7778 -2.9275 38 1 5.8488 -1.7819 -5.9383 39 1 5.2324 -2.0717 0.9074 40 1 5.8183 -3.0509 -0.4586 41 1 7.0322 -1.1394 -1.3723 42 1 6.3450 -0.0642 -0.1313 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234141496.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:46 Heat of formation + Delta-G solvation = 84.877808 kcal Electronic energy + Delta-G solvation = -25640.008466 eV Core-core repulsion = 22068.056182 eV Total energy + Delta-G solvation = -3571.952283 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.126 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.78039 -37.61568 -37.37790 -36.40886 -35.78228 -32.99553 -32.04398 -30.99125 -30.28438 -27.63092 -27.43935 -25.42802 -25.17982 -23.18179 -22.15804 -21.53817 -20.04719 -17.53240 -17.36030 -17.11482 -15.98121 -15.46854 -15.40512 -15.04100 -14.85193 -14.60886 -14.27231 -14.19286 -13.99472 -13.67052 -13.44267 -12.89035 -12.61818 -12.43711 -12.17351 -12.12405 -11.99852 -11.85794 -11.79232 -11.67592 -11.58435 -11.08124 -10.86793 -10.81184 -10.71450 -10.49556 -10.30467 -9.76929 -9.57987 -9.47178 -9.24135 -8.88124 -8.55996 -8.44468 -7.37124 -6.07621 -4.08141 0.85303 1.05374 1.84581 3.24238 3.29063 3.32121 3.35851 3.37504 3.51507 3.70830 4.35468 4.44565 4.52877 4.73652 4.82175 4.84393 5.15104 5.17688 5.21579 5.28526 5.38036 5.43942 5.53622 5.54537 5.70995 5.72981 5.79604 5.90207 6.07164 6.12299 6.15575 6.33492 6.35983 6.54743 6.78257 6.80628 7.15892 7.18103 7.29204 7.65624 7.73687 8.02340 8.06764 8.12291 8.44502 8.96965 9.54451 11.02245 Molecular weight = 322.13amu Principal moments of inertia in cm(-1) A = 0.011149 B = 0.005297 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.880565 B = 5284.729484 C = 6580.793752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.497 5.497 3 C 0.035 3.965 4 C 0.167 3.833 5 C -0.205 4.205 6 C 0.116 3.884 7 N -0.484 5.484 8 C 0.178 3.822 9 Cl -0.023 7.023 10 C -0.077 4.077 11 C 0.101 3.899 12 N -0.519 5.519 13 C 0.193 3.807 14 C -0.510 4.510 15 H 0.072 0.928 16 C 0.059 3.941 17 N -0.893 5.893 18 Si 0.890 3.110 19 H -0.276 1.276 20 H -0.289 1.289 21 H -0.276 1.276 22 C 0.067 3.933 23 C -0.038 4.038 24 C 0.220 3.780 25 N -0.473 5.473 26 H 0.028 0.972 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.024 0.976 32 H 0.136 0.864 33 H 0.161 0.839 34 H 0.040 0.960 35 H 0.098 0.902 36 H -0.001 1.001 37 H 0.032 0.968 38 H 0.262 0.738 39 H 0.061 0.939 40 H 0.036 0.964 41 H 0.146 0.854 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.855 3.219 11.462 16.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.217 5.217 3 C -0.111 4.111 4 C 0.064 3.936 5 C -0.228 4.228 6 C -0.041 4.041 7 N -0.195 5.195 8 C 0.013 3.987 9 Cl 0.005 6.995 10 C -0.082 4.082 11 C -0.028 4.028 12 N -0.243 5.243 13 C 0.068 3.932 14 C -0.549 4.549 15 H 0.090 0.910 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.717 3.283 19 H -0.201 1.201 20 H -0.215 1.215 21 H -0.201 1.201 22 C -0.063 4.063 23 C -0.078 4.078 24 C -0.097 4.097 25 N -0.151 5.151 26 H 0.047 0.953 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.095 0.905 31 H 0.042 0.958 32 H 0.154 0.846 33 H 0.178 0.822 34 H 0.058 0.942 35 H 0.117 0.883 36 H 0.016 0.984 37 H 0.050 0.950 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.054 0.946 41 H 0.163 0.837 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -10.065 2.435 12.597 16.307 hybrid contribution -0.129 0.712 -0.777 1.061 sum -10.194 3.147 11.821 15.923 Atomic orbital electron populations 1.22493 0.85714 1.02768 1.00957 1.59248 1.07929 1.14969 1.39604 1.22445 1.02557 0.85858 1.00250 1.18788 0.93490 0.92502 0.88868 1.22721 1.03486 1.02451 0.94094 1.22367 0.92520 0.89753 0.99468 1.67038 1.13983 1.15769 1.22671 1.21501 0.95493 0.92032 0.89680 1.98411 1.65494 1.39571 1.96000 1.20630 0.96404 0.94404 0.96760 1.20894 0.95558 0.95921 0.90397 1.62100 0.99292 1.56121 1.06790 1.19829 0.97205 0.95949 0.80210 1.21231 1.27055 1.11302 0.95272 0.90993 1.24967 0.96654 0.95746 0.96928 1.69941 1.44520 1.32619 1.06120 0.86692 0.81373 0.82234 0.77953 1.20146 1.21473 1.20126 1.22098 0.90875 0.95672 0.97638 1.20008 0.88409 1.01150 0.98272 1.29975 0.94295 0.92344 0.93086 1.81183 1.12263 1.10014 1.11660 0.95338 0.90307 0.91202 0.89657 0.90460 0.95760 0.84639 0.82226 0.94246 0.88330 0.98360 0.95022 0.92825 0.92088 0.94625 0.83655 0.87561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.35 60.07 0.56 0.82 16 2 N -0.50 -6.00 4.07 -186.66 -0.76 -6.76 16 3 C 0.04 0.39 9.39 60.06 0.56 0.95 16 4 C 0.17 2.12 4.72 -83.62 -0.39 1.73 16 5 C -0.21 -2.17 8.68 -39.24 -0.34 -2.51 16 6 C 0.12 1.29 11.17 -17.61 -0.20 1.10 16 7 N -0.48 -6.87 10.34 -10.45 -0.11 -6.98 16 8 C 0.18 2.65 6.19 -17.50 -0.11 2.54 16 9 Cl -0.02 -0.35 24.47 -51.86 -1.27 -1.62 16 10 C -0.08 -1.13 4.96 -104.25 -0.52 -1.65 16 11 C 0.10 1.64 4.68 -4.98 -0.02 1.62 16 12 N -0.52 -9.51 4.47 -237.52 -1.06 -10.57 16 13 C 0.19 4.32 4.76 -4.98 -0.02 4.30 16 14 C -0.51 -12.21 6.93 -34.44 -0.24 -12.45 16 15 H 0.07 1.63 5.89 -52.49 -0.31 1.33 16 16 C 0.06 1.51 5.46 -17.82 -0.10 1.41 16 17 N -0.89 -24.41 13.29 55.43 0.74 -23.68 16 18 Si 0.89 19.86 29.54 -169.99 -5.02 14.84 16 19 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 20 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 22 C 0.07 1.17 3.58 -3.82 -0.01 1.16 16 23 C -0.04 -0.66 4.40 -29.52 -0.13 -0.79 16 24 C 0.22 3.96 15.44 -20.69 -0.32 3.64 16 25 N -0.47 -9.31 18.55 42.23 0.78 -8.53 16 26 H 0.03 0.22 7.21 -51.93 -0.37 -0.15 16 27 H 0.08 0.66 8.12 -51.93 -0.42 0.23 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 1.12 8.14 -51.92 -0.42 0.69 16 30 H 0.08 0.79 8.12 -51.93 -0.42 0.36 16 31 H 0.02 0.22 7.40 -51.93 -0.38 -0.16 16 32 H 0.14 1.09 7.18 -52.49 -0.38 0.71 16 33 H 0.16 1.24 8.06 -52.48 -0.42 0.82 16 34 H 0.04 0.65 6.89 -51.93 -0.36 0.29 16 35 H 0.10 1.64 7.23 -51.93 -0.38 1.27 16 36 H 0.00 -0.04 7.78 -51.93 -0.40 -0.44 16 37 H 0.03 0.77 7.73 -51.93 -0.40 0.37 16 38 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 39 H 0.06 1.03 4.17 -51.93 -0.22 0.81 16 40 H 0.04 0.66 7.71 -51.93 -0.40 0.26 16 41 H 0.15 2.80 5.48 -51.93 -0.28 2.51 16 42 H 0.11 1.70 7.93 -51.93 -0.41 1.29 16 LS Contribution 357.23 15.07 5.38 5.38 Total: -1.00 -28.43 357.23 -8.14 -36.57 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -5.54 Total: -0.53 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -1.28 Total: 1.87 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: -0.41 Total: -56.51 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -1.27 Total: -1.62 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.43 -8.14 -36.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234141496.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.444 kcal (2) G-P(sol) polarization free energy of solvation -28.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds