Wall clock time and date at job start Tue Mar 31 2020 13:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46897 * 110.99802 * 2 1 4 4 C 1.39168 * 110.99804 * 123.95708 * 2 1 3 5 5 C 1.39539 * 120.85680 * 299.71473 * 4 2 1 6 6 C 1.37839 * 119.09735 * 180.30017 * 5 4 2 7 7 N 1.32031 * 120.86479 * 359.97438 * 6 5 4 8 8 C 1.32078 * 121.88732 * 359.97438 * 7 6 5 9 9 Cl 1.73604 * 119.59559 * 180.02562 * 8 7 6 10 10 C 1.38089 * 120.80948 * 0.02621 * 8 7 6 11 11 C 1.50695 * 120.46890 * 179.97438 * 10 8 7 12 12 N 1.46906 * 109.47139 * 270.01957 * 11 10 8 13 13 C 1.46892 * 111.00178 * 190.00260 * 12 11 10 14 14 C 1.50710 * 109.47257 * 159.81728 * 13 12 11 15 15 H 1.08000 * 119.99301 * 357.63602 * 14 13 12 16 16 C 1.37878 * 120.00266 * 177.63336 * 14 13 12 17 17 N 1.31515 * 119.99414 * 0.02562 * 16 14 13 18 18 Si 1.86791 * 120.00030 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47248 * 60.00205 * 18 16 14 20 20 H 1.48495 * 109.47198 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47324 * 300.00265 * 18 16 14 22 22 C 1.46895 * 110.99865 * 66.04671 * 12 11 10 23 23 C 1.53006 * 109.47341 * 195.54824 * 22 12 11 24 24 C 1.47196 * 109.47312 * 173.96879 * 23 22 12 25 25 N 7.46605 * 163.37664 * 143.10050 * 2 1 3 26 26 H 1.09000 * 109.46620 * 296.04303 * 1 2 3 27 27 H 1.08998 * 109.47135 * 56.04389 * 1 2 3 28 28 H 1.08994 * 109.47207 * 176.04619 * 1 2 3 29 29 H 1.09008 * 109.46879 * 183.95301 * 3 2 1 30 30 H 1.08997 * 109.47167 * 303.95155 * 3 2 1 31 31 H 1.09000 * 109.47397 * 63.95847 * 3 2 1 32 32 H 1.07996 * 120.45191 * 0.25373 * 5 4 2 33 33 H 1.08005 * 119.57093 * 180.02562 * 6 5 4 34 34 H 1.08994 * 109.47551 * 30.01807 * 11 10 8 35 35 H 1.09001 * 109.47481 * 150.02573 * 11 10 8 36 36 H 1.08997 * 109.47284 * 279.81680 * 13 12 11 37 37 H 1.09003 * 109.47116 * 39.82036 * 13 12 11 38 38 H 0.97005 * 119.99132 * 179.97438 * 17 16 14 39 39 H 1.08999 * 109.47573 * 315.54919 * 22 12 11 40 40 H 1.08998 * 109.47133 * 75.54999 * 22 12 11 41 41 H 1.09002 * 109.46976 * 293.96980 * 23 22 12 42 42 H 1.08999 * 109.46795 * 53.97060 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9678 -0.7257 1.0777 5 6 1.6699 -0.3549 2.3895 6 6 2.1883 -1.0959 3.4297 7 7 2.9567 -2.1442 3.1975 8 6 3.2611 -2.5282 1.9710 9 17 4.2764 -3.9163 1.7343 10 6 2.7816 -1.8390 0.8747 11 6 3.1342 -2.2835 -0.5214 12 7 4.3684 -1.6129 -0.9518 13 6 4.6160 -1.8338 -2.3827 14 6 5.5579 -0.7764 -2.8987 15 1 5.9047 0.0058 -2.2397 16 6 5.9769 -0.8078 -4.2119 17 7 5.5542 -1.7601 -5.0143 18 14 7.1437 0.5032 -4.8515 19 1 8.4066 0.4653 -4.0710 20 1 7.4388 0.2469 -6.2841 21 1 6.5131 1.8399 -4.7079 22 6 5.5149 -2.0520 -0.1452 23 6 6.6797 -1.0797 -0.3426 24 6 7.7762 -1.4354 0.5728 25 7 8.6231 -1.7080 1.2824 26 1 -0.3632 0.4512 0.9233 27 1 -0.3633 0.5740 -0.8524 28 1 -0.3633 -1.0252 -0.0709 29 1 3.0829 1.3432 -0.0709 30 1 1.5899 1.9163 -0.8524 31 1 1.7045 1.8723 0.9233 32 1 1.0424 0.5016 2.5871 33 1 1.9623 -0.8159 4.4481 34 1 3.2847 -3.3630 -0.5319 35 1 2.3232 -2.0230 -1.2015 36 1 5.0611 -2.8183 -2.5268 37 1 3.6735 -1.7778 -2.9275 38 1 5.8488 -1.7819 -5.9383 39 1 5.2324 -2.0717 0.9074 40 1 5.8183 -3.0509 -0.4586 41 1 7.0322 -1.1394 -1.3723 42 1 6.3450 -0.0642 -0.1313 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234141496.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:46 Heat of formation + Delta-G solvation = 67.366468 kcal Electronic energy + Delta-G solvation = -25640.767814 eV Core-core repulsion = 22068.056182 eV Total energy + Delta-G solvation = -3572.711632 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.126 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.77205 -38.97885 -38.42622 -37.54293 -37.27043 -34.72169 -33.44694 -31.91702 -31.72141 -29.13152 -28.39999 -26.73477 -26.13774 -24.80443 -23.37374 -22.59184 -21.49417 -19.12185 -18.32089 -18.14948 -17.63661 -16.90477 -16.54416 -16.26321 -16.07056 -15.84054 -15.62607 -15.43714 -15.06928 -14.75811 -14.70379 -14.23534 -14.17205 -13.82682 -13.50855 -13.30439 -13.14861 -13.11932 -13.02091 -12.83970 -12.64310 -12.51508 -12.50312 -12.27090 -12.17026 -12.08576 -11.95266 -11.26410 -11.07470 -10.68022 -10.48237 -10.39959 -9.93816 -9.38121 -8.95890 -8.03704 -6.08911 -0.12313 0.07953 0.77232 1.53935 1.54637 1.60539 1.75587 1.82182 2.48778 2.56422 2.84624 3.02782 3.30583 3.47117 3.70483 3.76917 3.89788 3.99199 4.22702 4.31940 4.33761 4.47417 4.50584 4.52759 4.67249 4.67984 4.73061 4.75008 4.94367 5.05542 5.08623 5.17377 5.22206 5.27982 5.39543 5.40100 5.42588 5.83752 6.01094 6.20971 6.31207 6.40211 6.60375 6.67269 6.70135 7.04785 7.57782 9.06441 Molecular weight = 322.13amu Principal moments of inertia in cm(-1) A = 0.011149 B = 0.005297 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2510.880565 B = 5284.729484 C = 6580.793752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.522 5.522 3 C 0.038 3.962 4 C 0.167 3.833 5 C -0.190 4.190 6 C 0.122 3.878 7 N -0.505 5.505 8 C 0.166 3.834 9 Cl -0.040 7.040 10 C -0.096 4.096 11 C 0.108 3.892 12 N -0.511 5.511 13 C 0.209 3.791 14 C -0.504 4.504 15 H 0.087 0.913 16 C 0.008 3.992 17 N -0.934 5.934 18 Si 0.949 3.051 19 H -0.268 1.268 20 H -0.297 1.297 21 H -0.266 1.266 22 C 0.073 3.927 23 C -0.029 4.029 24 C 0.238 3.762 25 N -0.497 5.497 26 H 0.050 0.950 27 H 0.086 0.914 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.082 0.918 31 H 0.048 0.952 32 H 0.171 0.829 33 H 0.198 0.802 34 H 0.032 0.968 35 H 0.090 0.910 36 H -0.031 1.031 37 H 0.007 0.993 38 H 0.259 0.741 39 H 0.073 0.927 40 H 0.022 0.978 41 H 0.129 0.871 42 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.885 5.612 13.451 19.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.243 5.243 3 C -0.108 4.108 4 C 0.064 3.936 5 C -0.212 4.212 6 C -0.035 4.035 7 N -0.217 5.217 8 C 0.002 3.998 9 Cl -0.011 7.011 10 C -0.101 4.101 11 C -0.020 4.020 12 N -0.235 5.235 13 C 0.083 3.917 14 C -0.542 4.542 15 H 0.105 0.895 16 C -0.190 4.190 17 N -0.575 5.575 18 Si 0.775 3.225 19 H -0.193 1.193 20 H -0.224 1.224 21 H -0.191 1.191 22 C -0.057 4.057 23 C -0.069 4.069 24 C -0.078 4.078 25 N -0.176 5.176 26 H 0.069 0.931 27 H 0.104 0.896 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.101 0.899 31 H 0.067 0.933 32 H 0.188 0.812 33 H 0.215 0.785 34 H 0.050 0.950 35 H 0.108 0.892 36 H -0.014 1.014 37 H 0.026 0.974 38 H 0.068 0.932 39 H 0.091 0.909 40 H 0.040 0.960 41 H 0.147 0.853 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.102 4.841 14.611 18.978 hybrid contribution 0.066 -0.012 -1.303 1.305 sum -11.036 4.829 13.308 17.950 Atomic orbital electron populations 1.22531 0.83909 1.02855 1.02447 1.59185 1.09634 1.15534 1.39937 1.22402 1.00991 0.85588 1.01794 1.18927 0.92758 0.91759 0.90193 1.23017 1.02702 1.02828 0.92618 1.23068 0.90724 0.88270 1.01433 1.67069 1.15251 1.17259 1.22100 1.21461 0.96097 0.92021 0.90226 1.98400 1.66063 1.40557 1.96104 1.20443 0.98384 0.96054 0.95204 1.20757 0.94092 0.95369 0.91826 1.62022 1.00437 1.56449 1.04587 1.19475 0.95427 0.94159 0.82602 1.21595 1.26112 1.11268 0.95242 0.89525 1.25715 0.98305 0.97505 0.97471 1.70083 1.46428 1.34740 1.06274 0.85745 0.79799 0.80166 0.76813 1.19280 1.22364 1.19113 1.22054 0.90657 0.95035 0.97968 1.19895 0.87881 1.02041 0.97034 1.29935 0.93829 0.91528 0.92545 1.81202 1.12955 1.10886 1.12510 0.93113 0.89573 0.91778 0.92113 0.89901 0.93342 0.81167 0.78492 0.94976 0.89162 1.01367 0.97440 0.93234 0.90910 0.95974 0.85311 0.85654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.35 127.69 1.19 1.65 16 2 N -0.52 -11.54 4.07 -744.47 -3.03 -14.57 16 3 C 0.04 0.75 9.39 127.69 1.20 1.95 16 4 C 0.17 3.88 4.72 38.57 0.18 4.06 16 5 C -0.19 -3.24 8.68 22.49 0.20 -3.04 16 6 C 0.12 2.26 11.17 84.57 0.94 3.20 16 7 N -0.51 -13.31 10.34 -186.99 -1.93 -15.25 16 8 C 0.17 4.81 6.19 84.62 0.52 5.34 16 9 Cl -0.04 -1.21 24.47 -2.72 -0.07 -1.28 16 10 C -0.10 -2.74 4.96 -19.62 -0.10 -2.84 16 11 C 0.11 3.59 4.68 85.55 0.40 3.99 16 12 N -0.51 -19.00 4.47 -905.38 -4.05 -23.05 16 13 C 0.21 9.71 4.76 85.56 0.41 10.12 16 14 C -0.50 -24.24 6.93 25.60 0.18 -24.07 16 15 H 0.09 3.84 5.89 -2.91 -0.02 3.83 16 16 C 0.01 0.42 5.46 84.65 0.46 0.88 16 17 N -0.93 -52.45 13.29 21.45 0.28 -52.17 16 18 Si 0.95 40.63 29.54 68.60 2.03 42.66 16 19 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 20 H -0.30 -13.08 7.11 99.48 0.71 -12.37 16 21 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 22 C 0.07 2.56 3.58 86.31 0.31 2.86 16 23 C -0.03 -0.96 4.40 28.79 0.13 -0.83 16 24 C 0.24 8.36 15.44 89.42 1.38 9.74 16 25 N -0.50 -19.14 18.55 20.03 0.37 -18.77 16 26 H 0.05 0.58 7.21 -2.39 -0.02 0.56 16 27 H 0.09 1.23 8.12 -2.39 -0.02 1.21 16 28 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 30 H 0.08 1.50 8.12 -2.39 -0.02 1.48 16 31 H 0.05 0.70 7.40 -2.39 -0.02 0.68 16 32 H 0.17 1.73 7.18 -2.91 -0.02 1.71 16 33 H 0.20 2.06 8.06 -2.91 -0.02 2.04 16 34 H 0.03 1.11 6.89 -2.39 -0.02 1.09 16 35 H 0.09 3.12 7.23 -2.39 -0.02 3.10 16 36 H -0.03 -1.64 7.78 -2.39 -0.02 -1.65 16 37 H 0.01 0.38 7.73 -2.39 -0.02 0.36 16 38 H 0.26 14.03 8.31 -92.70 -0.77 13.26 16 39 H 0.07 2.44 4.17 -2.39 -0.01 2.43 16 40 H 0.02 0.84 7.71 -2.39 -0.02 0.82 16 41 H 0.13 4.90 5.48 -2.39 -0.01 4.89 16 42 H 0.13 3.78 7.93 -2.39 -0.02 3.76 16 Total: -1.00 -62.29 357.23 2.05 -60.24 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 1.05 Total: 9.18 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: 7.40 Total: 13.00 kcal Atomic # 7 Polarization: -115.45 SS G_CDS: -8.35 Total: -123.80 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.66 kcal Atomic # 17 Polarization: -1.21 SS G_CDS: -0.07 Total: -1.28 kcal Total: -62.29 2.05 -60.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234141496.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.603 kcal (2) G-P(sol) polarization free energy of solvation -62.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds