Wall clock time and date at job start Tue Mar 31 2020 13:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34825 * 117.00306 * 2 1 4 4 O 1.21552 * 119.99659 * 359.97438 * 3 2 1 5 5 C 1.47160 * 120.00410 * 179.97438 * 3 2 1 6 6 C 1.39518 * 120.44280 * 355.95741 * 5 3 2 7 7 C 1.37816 * 120.18691 * 180.02562 * 6 5 3 8 8 C 1.39736 * 121.16074 * 0.02562 * 7 6 5 9 9 C 1.48313 * 119.54752 * 179.97438 * 8 7 6 10 10 C 1.39403 * 120.12319 * 179.72577 * 9 8 7 11 11 C 1.37990 * 119.87071 * 179.74870 * 10 9 8 12 12 C 1.38354 * 120.12221 * 0.52633 * 11 10 9 13 13 C 1.38310 * 120.25341 * 359.72600 * 12 11 10 14 14 C 1.50702 * 119.93430 * 180.02562 * 13 12 11 15 15 C 1.52998 * 117.49924 * 8.63763 * 14 13 12 16 16 C 1.52993 * 60.00318 * 252.51303 * 15 14 13 17 17 C 1.38021 * 120.12739 * 0.02562 * 13 12 11 18 18 C 1.38716 * 120.90741 * 359.97438 * 8 7 6 19 19 C 1.40568 * 119.73372 * 359.97438 * 18 8 7 20 20 C 1.40901 * 120.54999 * 179.97438 * 19 18 8 21 21 H 1.08001 * 120.00376 * 213.12056 * 20 19 18 22 22 C 1.40287 * 120.00189 * 33.12704 * 20 19 18 23 23 N 1.30624 * 119.99349 * 9.42979 * 22 20 19 24 24 Si 1.86792 * 120.00356 * 189.43268 * 22 20 19 25 25 H 1.48500 * 109.47194 * 359.97438 * 24 22 20 26 26 H 1.48505 * 109.47432 * 119.99600 * 24 22 20 27 27 H 1.48495 * 109.47358 * 239.99637 * 24 22 20 28 28 H 1.08999 * 109.47273 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47420 * 300.00180 * 1 2 3 30 30 H 1.09004 * 109.47209 * 60.00249 * 1 2 3 31 31 H 1.07997 * 119.90602 * 359.74764 * 6 5 3 32 32 H 1.08000 * 119.42410 * 179.97438 * 7 6 5 33 33 H 1.07996 * 120.06496 * 359.97438 * 10 9 8 34 34 H 1.07997 * 119.93899 * 180.25240 * 11 10 9 35 35 H 1.08007 * 119.87079 * 179.70111 * 12 11 10 36 36 H 1.08998 * 115.54987 * 154.35309 * 14 13 12 37 37 H 1.09004 * 117.50196 * 0.02562 * 15 14 13 38 38 H 1.09004 * 117.49523 * 145.02068 * 15 14 13 39 39 H 1.09005 * 117.50349 * 252.50980 * 16 15 14 40 40 H 1.08998 * 117.51664 * 107.48182 * 16 15 14 41 41 H 1.08001 * 120.06529 * 179.97438 * 17 13 12 42 42 H 1.08004 * 120.13603 * 179.97438 * 18 8 7 43 43 H 0.97002 * 119.99582 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0641 1.2013 0.0000 4 8 1.4021 2.2207 -0.0005 5 6 3.5337 1.2783 0.0006 6 6 4.3024 0.1171 0.0859 7 6 5.6783 0.1955 0.0865 8 6 6.3325 1.4274 0.0031 9 6 7.8150 1.4702 0.0073 10 6 8.4799 2.6922 -0.0812 11 6 9.8594 2.7263 -0.0716 12 6 10.5824 1.5498 0.0146 13 6 9.9280 0.3342 0.0973 14 6 10.7226 -0.9428 0.1915 15 6 12.2342 -0.8209 0.3947 16 6 11.6778 -1.2670 -0.9589 17 6 8.5485 0.2884 0.0938 18 6 5.6143 2.6111 -0.0836 19 6 4.2091 2.5752 -0.0884 20 6 3.4625 3.7670 -0.1753 21 1 2.5094 3.8450 0.3266 22 6 3.9572 4.8523 -0.9138 23 7 5.0123 4.7016 -1.6689 24 14 3.1070 6.5127 -0.8173 25 1 1.9434 6.4205 0.1007 26 1 4.0618 7.5289 -0.3062 27 1 2.6396 6.9089 -2.1699 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 3.8178 -0.8454 0.1562 32 1 6.2614 -0.7112 0.1535 33 1 7.9165 3.6107 -0.1534 34 1 10.3756 3.6727 -0.1360 35 1 11.6620 1.5809 0.0169 36 1 10.2152 -1.7777 0.6748 37 1 12.6538 0.1829 0.4606 38 1 12.7215 -1.5757 1.0120 39 1 11.7991 -2.3152 -1.2323 40 1 11.7312 -0.5568 -1.7841 41 1 8.0385 -0.6615 0.1580 42 1 6.1327 3.5564 -0.1471 43 1 5.3546 5.4522 -2.1793 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236088636.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:36 Heat of formation + Delta-G solvation = -21.975987 kcal Electronic energy + Delta-G solvation = -25747.158141 eV Core-core repulsion = 22108.419677 eV Total energy + Delta-G solvation = -3638.738464 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.136 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.52903 -39.17699 -37.49885 -36.28475 -35.21821 -33.94785 -31.75707 -30.68728 -29.72436 -28.50987 -26.95876 -25.61823 -23.91648 -22.90941 -22.39033 -21.83491 -20.76437 -19.92890 -19.05312 -17.55046 -16.75184 -16.59225 -15.83266 -15.54022 -15.38491 -15.29433 -14.69354 -14.41776 -13.97017 -13.58278 -13.38384 -13.09512 -12.87911 -12.76621 -12.52117 -12.38793 -12.09449 -11.73348 -11.66118 -11.52117 -11.30530 -11.21301 -11.01241 -10.87234 -10.79896 -10.71001 -10.46752 -10.35437 -10.14581 -9.97275 -9.64192 -9.48740 -8.89025 -8.76622 -8.26793 -7.56018 -7.18040 -6.97162 -4.60557 1.32199 1.74912 2.37608 2.71890 2.99777 3.08958 3.12850 3.66488 3.74113 3.81826 3.92731 4.33415 4.55890 4.62381 4.85141 4.99077 5.12067 5.28484 5.39032 5.45080 5.51361 5.59002 5.59722 5.66910 5.73224 5.80737 5.83323 5.94121 6.02768 6.04823 6.10265 6.23041 6.28827 6.38751 6.54689 6.75356 6.83136 6.87487 6.90906 6.98772 7.09773 7.26534 7.35132 7.46581 7.55909 7.79024 7.84472 8.01248 8.44451 8.57738 8.66689 9.07240 9.90057 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012327 B = 0.003714 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.972778 B = 7536.237983 C = 9627.588881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.374 6.374 3 C 0.503 3.497 4 O -0.522 6.522 5 C -0.259 4.259 6 C -0.028 4.028 7 C -0.241 4.241 8 C -0.026 4.026 9 C -0.015 4.015 10 C -0.114 4.114 11 C -0.118 4.118 12 C -0.138 4.138 13 C -0.059 4.059 14 C -0.110 4.110 15 C -0.180 4.180 16 C -0.172 4.172 17 C -0.110 4.110 18 C -0.133 4.133 19 C 0.147 3.853 20 C -0.407 4.407 21 H 0.113 0.887 22 C 0.067 3.933 23 N -0.777 5.777 24 Si 0.920 3.080 25 H -0.254 1.254 26 H -0.270 1.270 27 H -0.271 1.271 28 H 0.087 0.913 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.130 0.870 34 H 0.117 0.883 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.124 0.876 42 H 0.128 0.872 43 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.142 -6.022 1.793 10.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.292 6.292 3 C 0.355 3.645 4 O -0.413 6.413 5 C -0.262 4.262 6 C -0.046 4.046 7 C -0.260 4.260 8 C -0.026 4.026 9 C -0.015 4.015 10 C -0.132 4.132 11 C -0.136 4.136 12 C -0.155 4.155 13 C -0.059 4.059 14 C -0.128 4.128 15 C -0.217 4.217 16 C -0.209 4.209 17 C -0.128 4.128 18 C -0.151 4.151 19 C 0.143 3.857 20 C -0.434 4.434 21 H 0.131 0.869 22 C -0.153 4.153 23 N -0.401 5.401 24 Si 0.743 3.257 25 H -0.178 1.178 26 H -0.195 1.195 27 H -0.196 1.196 28 H 0.105 0.895 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.123 0.877 32 H 0.116 0.884 33 H 0.147 0.853 34 H 0.135 0.865 35 H 0.132 0.868 36 H 0.128 0.872 37 H 0.116 0.884 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.142 0.858 42 H 0.146 0.854 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.060 -5.597 1.618 9.946 hybrid contribution -0.511 0.705 -0.204 0.894 sum 7.549 -4.892 1.415 9.107 Atomic orbital electron populations 1.22967 0.78669 1.02008 1.01721 1.86585 1.21464 1.35027 1.86165 1.21285 0.89530 0.80186 0.73546 1.90704 1.66957 1.35257 1.48427 1.19745 0.86806 0.94157 1.25532 1.20718 0.93319 0.96143 0.94463 1.20227 0.93643 0.95627 1.16505 1.18560 0.89779 0.94233 1.00054 1.19104 0.93257 0.92585 0.96542 1.21425 0.94027 0.98242 0.99506 1.20987 0.94127 0.97670 1.00842 1.20895 0.99175 0.92138 1.03335 1.18949 0.93150 0.92804 1.01017 1.21007 0.91057 0.97308 1.03467 1.23041 0.95749 1.02880 0.99993 1.23004 1.03553 1.02067 0.92255 1.21051 0.92521 0.98230 1.01023 1.21463 0.93426 0.96404 1.03831 1.18377 0.91148 0.90153 0.86021 1.20450 1.05454 0.94562 1.22929 0.86931 1.26249 0.94224 1.01414 0.93440 1.69715 1.18928 1.33408 1.18007 0.86041 0.80423 0.79699 0.79520 1.17771 1.19491 1.19613 0.89452 0.92842 0.92786 0.87688 0.88380 0.85258 0.86521 0.86785 0.87168 0.88443 0.88753 0.88714 0.88638 0.85848 0.85432 0.90206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 10.57 101.05 1.07 1.71 16 2 O -0.37 -7.63 9.84 -40.84 -0.40 -8.04 16 3 C 0.50 12.10 7.87 34.35 0.27 12.37 16 4 O -0.52 -13.52 13.47 -19.30 -0.26 -13.78 16 5 C -0.26 -6.42 6.07 -102.48 -0.62 -7.04 16 6 C -0.03 -0.62 9.60 -39.26 -0.38 -0.99 16 7 C -0.24 -5.11 9.37 -39.18 -0.37 -5.48 16 8 C -0.03 -0.56 5.86 -105.02 -0.62 -1.18 16 9 C -0.01 -0.29 5.88 -104.90 -0.62 -0.90 16 10 C -0.11 -2.07 9.41 -39.24 -0.37 -2.44 16 11 C -0.12 -1.81 10.03 -39.63 -0.40 -2.20 16 12 C -0.14 -1.96 9.29 -39.51 -0.37 -2.32 16 13 C -0.06 -0.87 5.61 -104.67 -0.59 -1.46 16 14 C -0.11 -1.31 6.04 -91.77 -0.55 -1.86 16 15 C -0.18 -1.75 9.86 -26.74 -0.26 -2.01 16 16 C -0.17 -1.75 10.16 -26.73 -0.27 -2.02 16 17 C -0.11 -1.87 9.10 -39.24 -0.36 -2.23 16 18 C -0.13 -3.22 8.00 -38.53 -0.31 -3.53 16 19 C 0.15 3.83 5.66 -104.69 -0.59 3.24 16 20 C -0.41 -10.71 7.96 -37.80 -0.30 -11.01 16 21 H 0.11 3.07 5.76 -52.49 -0.30 2.77 16 22 C 0.07 1.63 5.26 -17.30 -0.09 1.54 16 23 N -0.78 -18.83 11.09 55.56 0.62 -18.21 16 24 Si 0.92 18.49 29.57 -169.99 -5.03 13.46 16 25 H -0.25 -5.23 7.11 56.52 0.40 -4.83 16 26 H -0.27 -5.18 7.11 56.52 0.40 -4.77 16 27 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 28 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.11 2.07 7.62 -52.49 -0.40 1.67 16 32 H 0.10 1.81 6.10 -52.49 -0.32 1.49 16 33 H 0.13 2.42 6.15 -52.49 -0.32 2.10 16 34 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 35 H 0.11 1.34 6.01 -52.48 -0.32 1.02 16 36 H 0.11 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.10 0.92 6.17 -51.93 -0.32 0.60 16 38 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.12 1.96 6.14 -52.49 -0.32 1.64 16 42 H 0.13 3.09 4.62 -52.48 -0.24 2.85 16 43 H 0.29 6.25 8.29 -40.82 -0.34 5.91 16 LS Contribution 358.77 15.07 5.41 5.41 Total: -1.00 -28.45 358.77 -10.45 -38.89 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -5.06 Total: 10.10 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: -5.72 Total: -27.83 kcal Atomic # 7 Polarization: -18.83 SS G_CDS: 0.62 Total: -18.21 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.66 Total: -21.81 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.46 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -28.45 -10.45 -38.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236088636.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.915 kcal (2) G-P(sol) polarization free energy of solvation -28.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds