Wall clock time and date at job start Tue Mar 31 2020 13:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34825 * 117.00306 * 2 1 4 4 O 1.21552 * 119.99659 * 359.97438 * 3 2 1 5 5 C 1.47160 * 120.00410 * 179.97438 * 3 2 1 6 6 C 1.39518 * 120.44280 * 355.95741 * 5 3 2 7 7 C 1.37816 * 120.18691 * 180.02562 * 6 5 3 8 8 C 1.39736 * 121.16074 * 0.02562 * 7 6 5 9 9 C 1.48313 * 119.54752 * 179.97438 * 8 7 6 10 10 C 1.39403 * 120.12319 * 179.72577 * 9 8 7 11 11 C 1.37990 * 119.87071 * 179.74870 * 10 9 8 12 12 C 1.38354 * 120.12221 * 0.52633 * 11 10 9 13 13 C 1.38310 * 120.25341 * 359.72600 * 12 11 10 14 14 C 1.50702 * 119.93430 * 180.02562 * 13 12 11 15 15 C 1.52998 * 117.49924 * 8.63763 * 14 13 12 16 16 C 1.52993 * 60.00318 * 252.51303 * 15 14 13 17 17 C 1.38021 * 120.12739 * 0.02562 * 13 12 11 18 18 C 1.38716 * 120.90741 * 359.97438 * 8 7 6 19 19 C 1.40568 * 119.73372 * 359.97438 * 18 8 7 20 20 C 1.40901 * 120.54999 * 179.97438 * 19 18 8 21 21 H 1.08001 * 120.00376 * 213.12056 * 20 19 18 22 22 C 1.40287 * 120.00189 * 33.12704 * 20 19 18 23 23 N 1.30624 * 119.99349 * 9.42979 * 22 20 19 24 24 Si 1.86792 * 120.00356 * 189.43268 * 22 20 19 25 25 H 1.48500 * 109.47194 * 359.97438 * 24 22 20 26 26 H 1.48505 * 109.47432 * 119.99600 * 24 22 20 27 27 H 1.48495 * 109.47358 * 239.99637 * 24 22 20 28 28 H 1.08999 * 109.47273 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47420 * 300.00180 * 1 2 3 30 30 H 1.09004 * 109.47209 * 60.00249 * 1 2 3 31 31 H 1.07997 * 119.90602 * 359.74764 * 6 5 3 32 32 H 1.08000 * 119.42410 * 179.97438 * 7 6 5 33 33 H 1.07996 * 120.06496 * 359.97438 * 10 9 8 34 34 H 1.07997 * 119.93899 * 180.25240 * 11 10 9 35 35 H 1.08007 * 119.87079 * 179.70111 * 12 11 10 36 36 H 1.08998 * 115.54987 * 154.35309 * 14 13 12 37 37 H 1.09004 * 117.50196 * 0.02562 * 15 14 13 38 38 H 1.09004 * 117.49523 * 145.02068 * 15 14 13 39 39 H 1.09005 * 117.50349 * 252.50980 * 16 15 14 40 40 H 1.08998 * 117.51664 * 107.48182 * 16 15 14 41 41 H 1.08001 * 120.06529 * 179.97438 * 17 13 12 42 42 H 1.08004 * 120.13603 * 179.97438 * 18 8 7 43 43 H 0.97002 * 119.99582 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0641 1.2013 0.0000 4 8 1.4021 2.2207 -0.0005 5 6 3.5337 1.2783 0.0006 6 6 4.3024 0.1171 0.0859 7 6 5.6783 0.1955 0.0865 8 6 6.3325 1.4274 0.0031 9 6 7.8150 1.4702 0.0073 10 6 8.4799 2.6922 -0.0812 11 6 9.8594 2.7263 -0.0716 12 6 10.5824 1.5498 0.0146 13 6 9.9280 0.3342 0.0973 14 6 10.7226 -0.9428 0.1915 15 6 12.2342 -0.8209 0.3947 16 6 11.6778 -1.2670 -0.9589 17 6 8.5485 0.2884 0.0938 18 6 5.6143 2.6111 -0.0836 19 6 4.2091 2.5752 -0.0884 20 6 3.4625 3.7670 -0.1753 21 1 2.5094 3.8450 0.3266 22 6 3.9572 4.8523 -0.9138 23 7 5.0123 4.7016 -1.6689 24 14 3.1070 6.5127 -0.8173 25 1 1.9434 6.4205 0.1007 26 1 4.0618 7.5289 -0.3062 27 1 2.6396 6.9089 -2.1699 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 3.8178 -0.8454 0.1562 32 1 6.2614 -0.7112 0.1535 33 1 7.9165 3.6107 -0.1534 34 1 10.3756 3.6727 -0.1360 35 1 11.6620 1.5809 0.0169 36 1 10.2152 -1.7777 0.6748 37 1 12.6538 0.1829 0.4606 38 1 12.7215 -1.5757 1.0120 39 1 11.7991 -2.3152 -1.2323 40 1 11.7312 -0.5568 -1.7841 41 1 8.0385 -0.6615 0.1580 42 1 6.1327 3.5564 -0.1471 43 1 5.3546 5.4522 -2.1793 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236088636.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:35 Heat of formation + Delta-G solvation = -33.274785 kcal Electronic energy + Delta-G solvation = -25747.648094 eV Core-core repulsion = 22108.419677 eV Total energy + Delta-G solvation = -3639.228417 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.136 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.07081 -40.64792 -38.99031 -37.49584 -36.94878 -35.73311 -33.29565 -32.07223 -31.37949 -30.01736 -28.43489 -27.34939 -25.23949 -24.28779 -23.41038 -23.05844 -22.39407 -21.47657 -20.47638 -19.27252 -18.39329 -17.97211 -17.48091 -17.06151 -16.98537 -16.58039 -16.07928 -15.77786 -15.17937 -15.08613 -14.76069 -14.67897 -14.47284 -14.27303 -13.97829 -13.92799 -13.50742 -13.15583 -12.97535 -12.92146 -12.86505 -12.65265 -12.57268 -12.34949 -12.12651 -11.94502 -11.87011 -11.59446 -11.55145 -11.29737 -11.23944 -11.17480 -10.72443 -10.27480 -9.47934 -9.38528 -8.88969 -8.67567 -6.51861 -0.23079 0.49845 0.79786 0.97309 1.32514 1.47471 1.48364 2.03224 2.14016 2.15349 2.61160 2.85918 3.22977 3.62871 3.64664 3.89769 4.02606 4.06257 4.20798 4.22741 4.28677 4.38035 4.38879 4.42149 4.49478 4.54304 4.62396 4.69168 4.75719 4.85343 4.96832 5.01605 5.07563 5.11867 5.19933 5.20607 5.25194 5.31736 5.44717 5.54546 5.63013 5.65674 5.73896 5.79856 5.94205 6.08495 6.15432 6.25351 6.57067 6.69443 6.81259 7.25515 8.13870 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012327 B = 0.003714 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2270.972778 B = 7536.237983 C = 9627.588881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.372 6.372 3 C 0.502 3.498 4 O -0.551 6.551 5 C -0.290 4.290 6 C -0.027 4.027 7 C -0.238 4.238 8 C -0.020 4.020 9 C -0.048 4.048 10 C -0.132 4.132 11 C -0.117 4.117 12 C -0.127 4.127 13 C -0.055 4.055 14 C -0.133 4.133 15 C -0.165 4.165 16 C -0.167 4.167 17 C -0.115 4.115 18 C -0.162 4.162 19 C 0.122 3.878 20 C -0.447 4.447 21 H 0.091 0.909 22 C 0.034 3.966 23 N -0.801 5.801 24 Si 0.983 3.017 25 H -0.267 1.267 26 H -0.251 1.251 27 H -0.263 1.263 28 H 0.135 0.865 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.110 0.890 34 H 0.143 0.857 35 H 0.148 0.852 36 H 0.117 0.883 37 H 0.103 0.897 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.090 0.910 41 H 0.132 0.868 42 H 0.118 0.882 43 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.716 -7.793 1.828 13.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.290 6.290 3 C 0.354 3.646 4 O -0.445 6.445 5 C -0.293 4.293 6 C -0.045 4.045 7 C -0.257 4.257 8 C -0.021 4.021 9 C -0.048 4.048 10 C -0.150 4.150 11 C -0.135 4.135 12 C -0.145 4.145 13 C -0.055 4.055 14 C -0.151 4.151 15 C -0.201 4.201 16 C -0.203 4.203 17 C -0.133 4.133 18 C -0.181 4.181 19 C 0.119 3.881 20 C -0.474 4.474 21 H 0.109 0.891 22 C -0.184 4.184 23 N -0.426 5.426 24 Si 0.804 3.196 25 H -0.191 1.191 26 H -0.174 1.174 27 H -0.187 1.187 28 H 0.153 0.847 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.149 0.851 32 H 0.148 0.852 33 H 0.128 0.872 34 H 0.161 0.839 35 H 0.165 0.835 36 H 0.135 0.865 37 H 0.121 0.879 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.108 0.892 41 H 0.150 0.850 42 H 0.136 0.864 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 10.646 -7.404 1.652 13.072 hybrid contribution -1.170 1.029 -0.199 1.571 sum 9.476 -6.375 1.453 11.513 Atomic orbital electron populations 1.23389 0.75832 1.05120 1.01722 1.86537 1.24182 1.32825 1.85487 1.21284 0.89543 0.80770 0.72955 1.90679 1.67560 1.36461 1.49797 1.20102 0.87887 0.94795 1.26471 1.21008 0.93691 0.96333 0.93496 1.20638 0.93689 0.96513 1.14835 1.18943 0.91771 0.93822 0.97518 1.19086 0.91825 0.94212 0.99705 1.21412 0.95476 0.97253 1.00902 1.21276 0.92875 0.99569 0.99747 1.21311 1.00823 0.91343 1.00984 1.19295 0.92537 0.94588 0.99108 1.21047 0.92184 0.96149 1.05718 1.23168 0.93596 1.03792 0.99582 1.23084 1.02152 1.03037 0.92069 1.21177 0.93676 0.97472 1.00951 1.21398 0.93015 0.97105 1.06545 1.18754 0.92185 0.90897 0.86308 1.20416 1.05357 0.96371 1.25262 0.89086 1.26934 0.94835 1.04068 0.92546 1.69735 1.19798 1.34660 1.18385 0.85131 0.79181 0.75894 0.79440 1.19104 1.17443 1.18725 0.84711 0.92715 0.93046 0.85095 0.85164 0.87225 0.83942 0.83484 0.86461 0.87907 0.86875 0.87087 0.89159 0.85030 0.86414 0.89271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.99 10.57 113.37 1.20 2.19 16 2 O -0.37 -15.17 9.84 -57.38 -0.56 -15.73 16 3 C 0.50 25.06 7.87 70.16 0.55 25.61 16 4 O -0.55 -30.06 13.47 19.67 0.26 -29.79 16 5 C -0.29 -14.96 6.07 -18.47 -0.11 -15.07 16 6 C -0.03 -1.20 9.60 22.48 0.22 -0.99 16 7 C -0.24 -10.07 9.37 22.53 0.21 -9.86 16 8 C -0.02 -0.91 5.86 -20.12 -0.12 -1.03 16 9 C -0.05 -1.89 5.88 -20.04 -0.12 -2.01 16 10 C -0.13 -4.89 9.41 22.49 0.21 -4.68 16 11 C -0.12 -3.39 10.03 22.24 0.22 -3.16 16 12 C -0.13 -3.22 9.29 22.31 0.21 -3.01 16 13 C -0.06 -1.49 5.61 -19.90 -0.11 -1.60 16 14 C -0.13 -2.68 6.04 -11.54 -0.07 -2.75 16 15 C -0.16 -2.46 9.86 30.59 0.30 -2.16 16 16 C -0.17 -2.74 10.16 30.59 0.31 -2.43 16 17 C -0.11 -3.74 9.10 22.49 0.20 -3.54 16 18 C -0.16 -8.37 8.00 22.95 0.18 -8.19 16 19 C 0.12 6.79 5.66 -19.91 -0.11 6.67 16 20 C -0.45 -25.21 7.96 23.42 0.19 -25.03 16 21 H 0.09 5.39 5.76 -2.91 -0.02 5.37 16 22 C 0.03 1.74 5.26 85.37 0.45 2.19 16 23 N -0.80 -40.86 11.09 21.88 0.24 -40.62 16 24 Si 0.98 39.54 29.57 68.60 2.03 41.57 16 25 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 26 H -0.25 -9.19 7.11 99.48 0.71 -8.48 16 27 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 28 H 0.13 2.79 8.14 -2.39 -0.02 2.77 16 29 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.13 5.01 7.62 -2.91 -0.02 4.99 16 32 H 0.13 4.58 6.10 -2.91 -0.02 4.56 16 33 H 0.11 4.41 6.15 -2.91 -0.02 4.39 16 34 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 35 H 0.15 2.76 6.01 -2.91 -0.02 2.74 16 36 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.10 1.43 6.17 -2.38 -0.01 1.42 16 38 H 0.11 1.31 8.14 -2.38 -0.02 1.29 16 39 H 0.11 1.48 8.14 -2.38 -0.02 1.46 16 40 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.13 3.93 6.14 -2.91 -0.02 3.91 16 42 H 0.12 6.18 4.62 -2.91 -0.01 6.16 16 43 H 0.30 13.42 8.29 -92.71 -0.77 12.65 16 Total: -1.00 -66.60 358.77 6.84 -59.76 By element: Atomic # 1 Polarization: 32.60 SS G_CDS: 1.05 Total: 33.66 kcal Atomic # 6 Polarization: -52.65 SS G_CDS: 3.81 Total: -48.84 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: 0.24 Total: -40.62 kcal Atomic # 8 Polarization: -45.23 SS G_CDS: -0.30 Total: -45.53 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.57 kcal Total: -66.60 6.84 -59.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236088636.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.483 kcal (2) G-P(sol) polarization free energy of solvation -66.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds