Wall clock time and date at job start Tue Mar 31 2020 13:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99855 * 2 1 4 4 H 1.48494 * 109.47352 * 270.00001 * 3 2 1 5 5 H 1.48496 * 109.46892 * 30.00291 * 3 2 1 6 6 H 1.48506 * 109.46961 * 150.00117 * 3 2 1 7 7 C 1.37883 * 120.00271 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99762 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99566 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.46800 * 179.97438 * 9 7 2 11 11 C 1.46904 * 111.00121 * 69.99807 * 10 9 7 12 12 C 1.50695 * 109.47190 * 293.95627 * 11 10 9 13 13 C 1.38678 * 120.41675 * 270.25239 * 12 11 10 14 14 C 1.38627 * 118.41930 * 180.24221 * 13 12 11 15 15 C 1.38232 * 119.16085 * 359.75178 * 14 13 12 16 16 N 1.31857 * 120.76541 * 359.97438 * 15 14 13 17 17 C 1.31889 * 121.72235 * 0.02562 * 16 15 14 18 18 C 1.46907 * 110.99975 * 193.95393 * 10 9 7 19 19 C 1.50693 * 109.47015 * 66.04813 * 18 10 9 20 20 C 1.37860 * 120.01796 * 260.00070 * 19 18 10 21 21 C 1.38722 * 120.69079 * 179.97438 * 20 19 18 22 22 C 1.37753 * 120.27646 * 0.02562 * 21 20 19 23 23 C 1.39381 * 119.60113 * 0.02562 * 22 21 20 24 24 C 1.46793 * 134.34807 * 179.97438 * 23 22 21 25 25 C 1.33982 * 106.18512 * 179.97438 * 24 23 22 26 26 O 1.34450 * 110.16523 * 359.97438 * 25 24 23 27 27 C 1.34848 * 110.89164 * 359.73823 * 26 25 24 28 28 H 0.97005 * 120.00296 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47373 * 60.00362 * 9 7 2 30 30 H 1.08999 * 109.47282 * 299.99499 * 9 7 2 31 31 H 1.09001 * 109.46737 * 173.95446 * 11 10 9 32 32 H 1.08996 * 109.46745 * 53.95365 * 11 10 9 33 33 H 1.07994 * 120.78944 * 359.96926 * 13 12 11 34 34 H 1.07997 * 120.42083 * 179.72800 * 14 13 12 35 35 H 1.07999 * 119.61954 * 180.02562 * 15 14 13 36 36 H 1.08002 * 119.61237 * 179.97438 * 17 16 15 37 37 H 1.09000 * 109.46788 * 186.04531 * 18 10 9 38 38 H 1.08994 * 109.46987 * 306.04018 * 18 10 9 39 39 H 1.07997 * 119.65773 * 359.97396 * 20 19 18 40 40 H 1.08006 * 119.85919 * 179.97438 * 21 20 19 41 41 H 1.08001 * 120.20196 * 179.97438 * 22 21 20 42 42 H 1.08005 * 126.90132 * 359.97438 * 24 23 22 43 43 H 1.08003 * 124.92006 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2057 -3.6156 -0.0027 11 6 2.9044 -3.7121 1.2859 12 6 3.7744 -2.4967 1.4779 13 6 5.0862 -2.4941 1.0280 14 6 5.8509 -1.3558 1.2308 15 6 5.2830 -0.2671 1.8655 16 7 4.0303 -0.3031 2.2753 17 6 3.2734 -1.3687 2.0993 18 6 1.5362 -4.8805 -0.3346 19 6 1.0428 -4.8293 -1.7575 20 6 -0.2824 -4.5533 -2.0185 21 6 -0.7514 -4.5023 -3.3231 22 6 0.1048 -4.7283 -4.3783 23 6 1.4468 -5.0095 -4.1279 24 6 2.6109 -5.2947 -4.9755 25 6 3.6422 -5.4853 -4.1417 26 8 3.2389 -5.3474 -2.8666 27 6 1.9241 -5.0541 -2.8071 28 1 -0.4851 0.8401 0.0004 29 1 0.6248 -2.5563 -0.8920 30 1 0.6241 -2.5575 0.8880 31 1 3.5247 -4.6084 1.2967 32 1 2.1732 -3.7665 2.0924 33 1 5.5033 -3.3599 0.5354 34 1 6.8776 -1.3202 0.8974 35 1 5.8720 0.6237 2.0270 36 1 2.2516 -1.3613 2.4489 37 1 2.2409 -5.7045 -0.2237 38 1 0.6917 -5.0318 0.3377 39 1 -0.9626 -4.3749 -1.1989 40 1 -1.7924 -4.2853 -3.5121 41 1 -0.2617 -4.6887 -5.3934 42 1 2.6317 -5.3415 -6.0543 43 1 4.6516 -5.7154 -4.4494 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236732558.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:08 Heat of formation + Delta-G solvation = 89.316705 kcal Electronic energy + Delta-G solvation = -27305.489871 eV Core-core repulsion = 23703.870171 eV Total energy + Delta-G solvation = -3601.619700 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.08959 -39.56208 -37.98731 -36.36951 -33.08276 -32.60788 -31.67107 -30.94844 -29.94202 -29.02268 -27.61444 -25.98024 -23.88648 -22.65471 -22.58603 -21.94387 -21.76338 -20.46006 -19.74406 -17.09559 -16.76342 -16.60093 -16.24997 -15.75962 -15.55787 -15.31667 -14.82142 -14.53430 -14.35832 -13.98819 -13.56486 -13.24606 -12.94843 -12.85290 -12.42768 -12.39065 -12.25629 -12.09297 -11.95805 -11.78618 -11.72393 -11.20214 -11.09999 -10.76982 -10.60621 -10.56512 -10.30177 -9.90875 -9.66896 -9.39301 -8.81361 -8.57544 -8.40576 -8.22449 -7.84394 -7.65565 -7.34122 -6.07688 -3.99226 1.20886 1.73643 2.03137 2.22381 2.62196 3.14215 3.40643 3.46819 3.62440 4.00324 4.49687 4.64656 4.70305 4.89379 5.10074 5.25129 5.29793 5.34049 5.35915 5.46072 5.51223 5.58584 5.66193 5.71496 5.76589 5.82501 5.85164 5.92338 6.01638 6.10256 6.13823 6.17759 6.48471 6.51443 6.64752 6.68551 6.70774 6.80194 6.92111 6.97312 7.14039 7.19920 7.24936 7.50136 7.63381 7.77533 8.03357 8.10400 8.46709 8.95327 8.99815 9.56615 11.00641 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012793 B = 0.005020 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.142720 B = 5576.277770 C = 6432.250623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.065 3.935 3 Si 0.876 3.124 4 H -0.290 1.290 5 H -0.290 1.290 6 H -0.239 1.239 7 C -0.497 4.497 8 H 0.076 0.924 9 C 0.186 3.814 10 N -0.527 5.527 11 C 0.112 3.888 12 C -0.115 4.115 13 C -0.069 4.069 14 C -0.211 4.211 15 C 0.093 3.907 16 N -0.506 5.506 17 C 0.188 3.812 18 C 0.095 3.905 19 C -0.049 4.049 20 C -0.081 4.081 21 C -0.132 4.132 22 C -0.081 4.081 23 C -0.140 4.140 24 C -0.218 4.218 25 C 0.003 3.997 26 O -0.186 6.186 27 C 0.081 3.919 28 H 0.261 0.739 29 H 0.039 0.961 30 H -0.008 1.008 31 H 0.064 0.936 32 H 0.034 0.966 33 H 0.118 0.882 34 H 0.115 0.885 35 H 0.134 0.866 36 H 0.147 0.853 37 H 0.071 0.929 38 H 0.037 0.963 39 H 0.132 0.868 40 H 0.126 0.874 41 H 0.121 0.879 42 H 0.152 0.848 43 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.666 -11.775 -4.186 13.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.138 4.138 3 Si 0.703 3.297 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.162 1.162 7 C -0.535 4.535 8 H 0.094 0.906 9 C 0.061 3.939 10 N -0.252 5.252 11 C -0.016 4.016 12 C -0.118 4.118 13 C -0.095 4.095 14 C -0.232 4.232 15 C -0.063 4.063 16 N -0.216 5.216 17 C 0.031 3.969 18 C -0.033 4.033 19 C -0.050 4.050 20 C -0.099 4.099 21 C -0.151 4.151 22 C -0.100 4.100 23 C -0.141 4.141 24 C -0.237 4.237 25 C -0.062 4.062 26 O -0.086 6.086 27 C 0.033 3.967 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.009 0.991 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.136 0.864 34 H 0.133 0.867 35 H 0.152 0.848 36 H 0.165 0.835 37 H 0.089 0.911 38 H 0.055 0.945 39 H 0.150 0.850 40 H 0.144 0.856 41 H 0.139 0.861 42 H 0.169 0.831 43 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 4.684 -10.864 -3.859 12.444 hybrid contribution 0.032 0.369 -0.529 0.646 sum 4.716 -10.494 -4.388 12.314 Atomic orbital electron populations 1.69959 1.06214 1.27008 1.49369 1.24922 0.94695 0.99339 0.94891 0.86782 0.82313 0.83006 0.77618 1.21698 1.21610 1.16177 1.21533 0.94174 0.89667 1.48080 0.90618 1.19899 0.90113 0.87330 0.96578 1.62253 1.31018 1.02894 1.29004 1.20721 0.95415 0.94541 0.90920 1.20376 0.94290 0.97598 0.99489 1.21100 0.93705 0.97771 0.96903 1.21703 1.00699 0.95650 1.05118 1.22373 0.91918 0.96922 0.95053 1.67714 1.05532 1.27071 1.21245 1.22303 0.97290 0.86751 0.90562 1.20912 0.97255 0.93936 0.91197 1.18634 0.91197 1.01882 0.93270 1.20860 0.93973 0.97830 0.97266 1.20928 0.99785 1.02089 0.92259 1.20388 0.90995 0.99539 0.99034 1.19904 0.94981 1.06446 0.92777 1.22407 0.91721 1.09714 0.99833 1.23859 0.99723 1.01886 0.80781 1.84048 1.23452 1.72775 1.28330 1.19260 0.81745 1.01082 0.94607 0.92909 0.94337 0.99064 0.91778 0.94802 0.86432 0.86654 0.84812 0.83531 0.91076 0.94459 0.85034 0.85644 0.86135 0.83080 0.78193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.62 13.29 55.43 0.74 -24.88 16 2 C 0.07 1.80 5.44 -17.82 -0.10 1.71 16 3 Si 0.88 22.15 28.92 -169.99 -4.92 17.24 16 4 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.24 -5.86 5.35 56.52 0.30 -5.56 16 7 C -0.50 -13.17 5.38 -34.44 -0.19 -13.36 16 8 H 0.08 2.05 4.79 -52.49 -0.25 1.80 16 9 C 0.19 4.53 4.52 -4.98 -0.02 4.50 16 10 N -0.53 -10.81 4.55 -238.97 -1.09 -11.90 16 11 C 0.11 2.05 5.14 -4.98 -0.03 2.03 16 12 C -0.11 -2.26 3.48 -104.48 -0.36 -2.62 16 13 C -0.07 -1.25 9.65 -39.28 -0.38 -1.63 16 14 C -0.21 -3.67 10.11 -39.44 -0.40 -4.07 16 15 C 0.09 1.76 10.66 -17.54 -0.19 1.58 16 16 N -0.51 -10.93 8.63 -13.25 -0.11 -11.04 16 17 C 0.19 4.03 6.95 -17.55 -0.12 3.91 16 18 C 0.09 1.66 5.10 -4.98 -0.03 1.63 16 19 C -0.05 -0.88 4.63 -104.53 -0.48 -1.36 16 20 C -0.08 -1.36 8.33 -39.54 -0.33 -1.69 16 21 C -0.13 -2.02 10.03 -39.58 -0.40 -2.41 16 22 C -0.08 -1.22 10.10 -39.33 -0.40 -1.62 16 23 C -0.14 -2.30 6.40 -105.16 -0.67 -2.97 16 24 C -0.22 -2.93 11.14 -37.62 -0.42 -3.35 16 25 C 0.00 0.04 11.96 29.24 0.35 0.39 16 26 O -0.19 -3.13 10.58 3.79 0.04 -3.09 16 27 C 0.08 1.45 7.11 -38.49 -0.27 1.18 16 28 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.04 1.02 5.94 -51.93 -0.31 0.71 16 30 H -0.01 -0.22 7.99 -51.93 -0.41 -0.63 16 31 H 0.06 1.01 7.89 -51.93 -0.41 0.61 16 32 H 0.03 0.61 7.96 -51.93 -0.41 0.19 16 33 H 0.12 1.90 8.06 -52.49 -0.42 1.47 16 34 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 35 H 0.13 2.19 8.06 -52.49 -0.42 1.77 16 36 H 0.15 3.32 7.67 -52.49 -0.40 2.92 16 37 H 0.07 1.13 7.93 -51.93 -0.41 0.72 16 38 H 0.04 0.62 7.97 -51.93 -0.41 0.20 16 39 H 0.13 2.09 8.02 -52.49 -0.42 1.67 16 40 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 41 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 42 H 0.15 1.57 8.06 -52.48 -0.42 1.14 16 43 H 0.20 1.65 8.06 -52.48 -0.42 1.23 16 LS Contribution 352.54 15.07 5.31 5.31 Total: -1.00 -31.91 352.54 -10.10 -42.01 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -5.64 Total: 4.52 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -4.43 Total: -18.16 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: -0.47 Total: -47.82 kcal Atomic # 8 Polarization: -3.13 SS G_CDS: 0.04 Total: -3.09 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.92 Total: 17.24 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.91 -10.10 -42.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236732558.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.330 kcal (2) G-P(sol) polarization free energy of solvation -31.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds