Wall clock time and date at job start Tue Mar 31 2020 13:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99855 * 2 1 4 4 H 1.48494 * 109.47352 * 270.00001 * 3 2 1 5 5 H 1.48496 * 109.46892 * 30.00291 * 3 2 1 6 6 H 1.48506 * 109.46961 * 150.00117 * 3 2 1 7 7 C 1.37883 * 120.00271 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99762 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99566 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.46800 * 179.97438 * 9 7 2 11 11 C 1.46904 * 111.00121 * 69.99807 * 10 9 7 12 12 C 1.50695 * 109.47190 * 293.95627 * 11 10 9 13 13 C 1.38678 * 120.41675 * 270.25239 * 12 11 10 14 14 C 1.38627 * 118.41930 * 180.24221 * 13 12 11 15 15 C 1.38232 * 119.16085 * 359.75178 * 14 13 12 16 16 N 1.31857 * 120.76541 * 359.97438 * 15 14 13 17 17 C 1.31889 * 121.72235 * 0.02562 * 16 15 14 18 18 C 1.46907 * 110.99975 * 193.95393 * 10 9 7 19 19 C 1.50693 * 109.47015 * 66.04813 * 18 10 9 20 20 C 1.37860 * 120.01796 * 260.00070 * 19 18 10 21 21 C 1.38722 * 120.69079 * 179.97438 * 20 19 18 22 22 C 1.37753 * 120.27646 * 0.02562 * 21 20 19 23 23 C 1.39381 * 119.60113 * 0.02562 * 22 21 20 24 24 C 1.46793 * 134.34807 * 179.97438 * 23 22 21 25 25 C 1.33982 * 106.18512 * 179.97438 * 24 23 22 26 26 O 1.34450 * 110.16523 * 359.97438 * 25 24 23 27 27 C 1.34848 * 110.89164 * 359.73823 * 26 25 24 28 28 H 0.97005 * 120.00296 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47373 * 60.00362 * 9 7 2 30 30 H 1.08999 * 109.47282 * 299.99499 * 9 7 2 31 31 H 1.09001 * 109.46737 * 173.95446 * 11 10 9 32 32 H 1.08996 * 109.46745 * 53.95365 * 11 10 9 33 33 H 1.07994 * 120.78944 * 359.96926 * 13 12 11 34 34 H 1.07997 * 120.42083 * 179.72800 * 14 13 12 35 35 H 1.07999 * 119.61954 * 180.02562 * 15 14 13 36 36 H 1.08002 * 119.61237 * 179.97438 * 17 16 15 37 37 H 1.09000 * 109.46788 * 186.04531 * 18 10 9 38 38 H 1.08994 * 109.46987 * 306.04018 * 18 10 9 39 39 H 1.07997 * 119.65773 * 359.97396 * 20 19 18 40 40 H 1.08006 * 119.85919 * 179.97438 * 21 20 19 41 41 H 1.08001 * 120.20196 * 179.97438 * 22 21 20 42 42 H 1.08005 * 126.90132 * 359.97438 * 24 23 22 43 43 H 1.08003 * 124.92006 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 7 2.2057 -3.6156 -0.0027 11 6 2.9044 -3.7121 1.2859 12 6 3.7744 -2.4967 1.4779 13 6 5.0862 -2.4941 1.0280 14 6 5.8509 -1.3558 1.2308 15 6 5.2830 -0.2671 1.8655 16 7 4.0303 -0.3031 2.2753 17 6 3.2734 -1.3687 2.0993 18 6 1.5362 -4.8805 -0.3346 19 6 1.0428 -4.8293 -1.7575 20 6 -0.2824 -4.5533 -2.0185 21 6 -0.7514 -4.5023 -3.3231 22 6 0.1048 -4.7283 -4.3783 23 6 1.4468 -5.0095 -4.1279 24 6 2.6109 -5.2947 -4.9755 25 6 3.6422 -5.4853 -4.1417 26 8 3.2389 -5.3474 -2.8666 27 6 1.9241 -5.0541 -2.8071 28 1 -0.4851 0.8401 0.0004 29 1 0.6248 -2.5563 -0.8920 30 1 0.6241 -2.5575 0.8880 31 1 3.5247 -4.6084 1.2967 32 1 2.1732 -3.7665 2.0924 33 1 5.5033 -3.3599 0.5354 34 1 6.8776 -1.3202 0.8974 35 1 5.8720 0.6237 2.0270 36 1 2.2516 -1.3613 2.4489 37 1 2.2409 -5.7045 -0.2237 38 1 0.6917 -5.0318 0.3377 39 1 -0.9626 -4.3749 -1.1989 40 1 -1.7924 -4.2853 -3.5121 41 1 -0.2617 -4.6887 -5.3934 42 1 2.6317 -5.3415 -6.0543 43 1 4.6516 -5.7154 -4.4494 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236732558.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:08 Heat of formation + Delta-G solvation = 70.470472 kcal Electronic energy + Delta-G solvation = -27306.307105 eV Core-core repulsion = 23703.870171 eV Total energy + Delta-G solvation = -3602.436934 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.23072 -41.10455 -39.29948 -37.83359 -34.80670 -34.18006 -33.06619 -32.36696 -31.31261 -30.16209 -29.50824 -27.36982 -25.60236 -24.13198 -24.05191 -23.19645 -23.11226 -21.86525 -21.13104 -18.67177 -18.21316 -17.90471 -17.70374 -17.16226 -16.93008 -16.65987 -16.49858 -16.01112 -16.00770 -15.43449 -14.88838 -14.70319 -14.49944 -14.15893 -14.03878 -13.80707 -13.68105 -13.58728 -13.47255 -13.12612 -13.02040 -12.98113 -12.59340 -12.47274 -12.35287 -12.12144 -11.80913 -11.62517 -11.35132 -10.92090 -10.60434 -10.33747 -10.00949 -9.45237 -9.29564 -9.07188 -8.91871 -8.18235 -6.12762 0.03320 0.49101 0.54766 0.72533 1.36094 1.40551 1.55144 1.58610 2.05612 2.43693 2.75760 3.09096 3.26037 3.58824 3.64734 3.77025 3.85629 4.02762 4.10538 4.15556 4.19305 4.32739 4.36796 4.45354 4.46965 4.55833 4.58745 4.66863 4.70433 4.72777 4.82878 4.99780 5.03008 5.13428 5.24137 5.31328 5.37153 5.46789 5.47961 5.56945 5.61577 5.66758 5.74062 5.81972 6.09395 6.14603 6.32937 6.37460 6.61647 6.92186 7.41075 7.46374 8.90885 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.012793 B = 0.005020 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.142720 B = 5576.277770 C = 6432.250623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.020 3.980 3 Si 0.919 3.081 4 H -0.296 1.296 5 H -0.298 1.298 6 H -0.227 1.227 7 C -0.487 4.487 8 H 0.073 0.927 9 C 0.206 3.794 10 N -0.532 5.532 11 C 0.111 3.889 12 C -0.123 4.123 13 C -0.070 4.070 14 C -0.193 4.193 15 C 0.075 3.925 16 N -0.530 5.530 17 C 0.168 3.832 18 C 0.098 3.902 19 C -0.071 4.071 20 C -0.099 4.099 21 C -0.140 4.140 22 C -0.084 4.084 23 C -0.159 4.159 24 C -0.225 4.225 25 C 0.006 3.994 26 O -0.205 6.205 27 C 0.052 3.948 28 H 0.258 0.742 29 H 0.015 0.985 30 H -0.035 1.035 31 H 0.096 0.904 32 H 0.031 0.969 33 H 0.145 0.855 34 H 0.156 0.844 35 H 0.160 0.840 36 H 0.119 0.881 37 H 0.090 0.910 38 H 0.040 0.960 39 H 0.127 0.873 40 H 0.148 0.852 41 H 0.150 0.850 42 H 0.183 0.817 43 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.671 -12.920 -5.792 16.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.179 4.179 3 Si 0.746 3.254 4 H -0.223 1.223 5 H -0.224 1.224 6 H -0.149 1.149 7 C -0.525 4.525 8 H 0.091 0.909 9 C 0.080 3.920 10 N -0.256 5.256 11 C -0.016 4.016 12 C -0.126 4.126 13 C -0.096 4.096 14 C -0.213 4.213 15 C -0.081 4.081 16 N -0.240 5.240 17 C 0.011 3.989 18 C -0.029 4.029 19 C -0.072 4.072 20 C -0.118 4.118 21 C -0.158 4.158 22 C -0.102 4.102 23 C -0.160 4.160 24 C -0.243 4.243 25 C -0.058 4.058 26 O -0.106 6.106 27 C 0.004 3.996 28 H 0.067 0.933 29 H 0.033 0.967 30 H -0.017 1.017 31 H 0.115 0.885 32 H 0.049 0.951 33 H 0.163 0.837 34 H 0.174 0.826 35 H 0.178 0.822 36 H 0.136 0.864 37 H 0.109 0.891 38 H 0.058 0.942 39 H 0.145 0.855 40 H 0.166 0.834 41 H 0.168 0.832 42 H 0.200 0.800 43 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 7.712 -12.027 -5.459 15.295 hybrid contribution -0.734 0.631 -0.021 0.968 sum 6.978 -11.396 -5.480 14.443 Atomic orbital electron populations 1.70050 1.07264 1.27061 1.52129 1.25472 0.95157 1.01674 0.95558 0.86111 0.81867 0.80431 0.76965 1.22324 1.22420 1.14903 1.21677 0.93983 0.90345 1.46490 0.90878 1.19474 0.89983 0.88417 0.94094 1.62151 1.30163 1.03110 1.30204 1.20827 0.95501 0.95484 0.89837 1.20511 0.95422 0.97287 0.99351 1.21491 0.92899 0.99053 0.96116 1.22154 1.02271 0.94299 1.02599 1.22914 0.91247 0.98705 0.95206 1.67623 1.07005 1.27467 1.21923 1.22021 0.96630 0.87964 0.92275 1.20951 0.97675 0.92885 0.91435 1.18755 0.91817 1.03143 0.93522 1.21011 0.94025 0.98548 0.98174 1.21248 1.01151 1.01629 0.91742 1.20782 0.90670 0.98406 1.00346 1.20429 0.96290 1.06190 0.93064 1.22815 0.90511 1.09671 1.01324 1.24826 1.01556 1.00161 0.79262 1.84021 1.22947 1.73127 1.30507 1.19469 0.82503 1.02284 0.95310 0.93338 0.96724 1.01723 0.88534 0.95115 0.83747 0.82629 0.82249 0.86351 0.89143 0.94184 0.85466 0.83392 0.83186 0.79967 0.73626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.59 13.29 21.45 0.28 -55.31 16 2 C 0.02 1.17 5.44 84.66 0.46 1.63 16 3 Si 0.92 46.34 28.92 68.60 1.98 48.32 16 4 H -0.30 -15.05 7.11 99.48 0.71 -14.34 16 5 H -0.30 -15.22 7.11 99.48 0.71 -14.52 16 6 H -0.23 -10.82 5.35 99.48 0.53 -10.29 16 7 C -0.49 -26.37 5.38 25.60 0.14 -26.23 16 8 H 0.07 3.96 4.79 -2.91 -0.01 3.94 16 9 C 0.21 10.44 4.52 85.55 0.39 10.82 16 10 N -0.53 -21.86 4.55 -909.96 -4.14 -26.00 16 11 C 0.11 3.99 5.14 85.55 0.44 4.43 16 12 C -0.12 -4.71 3.48 -19.77 -0.07 -4.78 16 13 C -0.07 -2.30 9.65 22.47 0.22 -2.08 16 14 C -0.19 -5.96 10.11 22.36 0.23 -5.73 16 15 C 0.07 2.64 10.66 84.69 0.90 3.54 16 16 N -0.53 -22.57 8.63 -195.83 -1.69 -24.26 16 17 C 0.17 7.29 6.95 84.67 0.59 7.88 16 18 C 0.10 3.44 5.10 85.55 0.44 3.88 16 19 C -0.07 -2.61 4.63 -19.80 -0.09 -2.70 16 20 C -0.10 -3.44 8.33 22.30 0.19 -3.26 16 21 C -0.14 -4.25 10.03 22.27 0.22 -4.02 16 22 C -0.08 -2.43 10.10 22.43 0.23 -2.20 16 23 C -0.16 -5.01 6.40 -20.21 -0.13 -5.14 16 24 C -0.22 -5.42 11.14 23.54 0.26 -5.16 16 25 C 0.01 0.14 11.96 66.85 0.80 0.94 16 26 O -0.20 -6.57 10.58 -9.34 -0.10 -6.66 16 27 C 0.05 1.84 7.11 22.98 0.16 2.00 16 28 H 0.26 15.01 8.31 -92.70 -0.77 14.24 16 29 H 0.01 0.81 5.94 -2.39 -0.01 0.80 16 30 H -0.03 -1.91 7.99 -2.39 -0.02 -1.93 16 31 H 0.10 2.82 7.89 -2.39 -0.02 2.80 16 32 H 0.03 1.12 7.96 -2.39 -0.02 1.10 16 33 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 34 H 0.16 3.56 8.06 -2.91 -0.02 3.53 16 35 H 0.16 4.69 8.06 -2.91 -0.02 4.66 16 36 H 0.12 5.69 7.67 -2.91 -0.02 5.67 16 37 H 0.09 2.78 7.93 -2.39 -0.02 2.76 16 38 H 0.04 1.36 7.97 -2.39 -0.02 1.34 16 39 H 0.13 4.34 8.02 -2.91 -0.02 4.32 16 40 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 41 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 42 H 0.18 3.07 8.06 -2.91 -0.02 3.05 16 43 H 0.25 2.90 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -71.75 352.54 2.55 -69.20 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: 0.84 Total: 20.89 kcal Atomic # 6 Polarization: -31.55 SS G_CDS: 5.37 Total: -26.19 kcal Atomic # 7 Polarization: -100.02 SS G_CDS: -5.55 Total: -105.56 kcal Atomic # 8 Polarization: -6.57 SS G_CDS: -0.10 Total: -6.66 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 1.98 Total: 48.32 kcal Total: -71.75 2.55 -69.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236732558.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.673 kcal (2) G-P(sol) polarization free energy of solvation -71.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds