Wall clock time and date at job start Tue Mar 31 2020 13:27:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00236 * 2 1 4 4 H 1.48497 * 109.47318 * 270.00324 * 3 2 1 5 5 H 1.48504 * 109.47017 * 30.00543 * 3 2 1 6 6 H 1.48503 * 109.46854 * 150.00090 * 3 2 1 7 7 C 1.37882 * 119.99671 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00302 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99973 * 179.97438 * 7 2 1 10 10 N 1.46903 * 109.47293 * 184.53266 * 9 7 2 11 11 C 1.46896 * 110.99716 * 195.20263 * 10 9 7 12 12 C 1.50697 * 109.47257 * 66.04918 * 11 10 9 13 13 C 1.38670 * 120.42301 * 89.99669 * 12 11 10 14 14 C 1.38627 * 118.42207 * 179.97438 * 13 12 11 15 15 C 1.38231 * 119.16058 * 0.25537 * 14 13 12 16 16 N 1.31849 * 120.76148 * 359.49353 * 15 14 13 17 17 C 1.31884 * 121.72873 * 0.49584 * 16 15 14 18 18 C 1.46902 * 110.99753 * 71.24590 * 10 9 7 19 19 C 1.50703 * 109.46661 * 196.70770 * 18 10 9 20 20 C 1.37766 * 120.19482 * 254.75006 * 19 18 10 21 21 C 1.38716 * 120.26691 * 179.76904 * 20 19 18 22 22 C 1.37856 * 120.69822 * 0.51662 * 21 20 19 23 23 C 1.38886 * 119.95731 * 359.74495 * 22 21 20 24 24 O 1.34826 * 133.42705 * 179.97438 * 23 22 21 25 25 C 1.34448 * 110.89971 * 179.97438 * 24 23 22 26 26 C 1.33986 * 110.15947 * 0.02562 * 25 24 23 27 27 C 1.39373 * 120.20279 * 75.03488 * 19 18 10 28 28 H 0.97006 * 119.99745 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47201 * 64.53239 * 9 7 2 30 30 H 1.09004 * 109.47374 * 304.53500 * 9 7 2 31 31 H 1.08997 * 109.47476 * 306.03883 * 11 10 9 32 32 H 1.09000 * 109.46704 * 186.04298 * 11 10 9 33 33 H 1.08002 * 120.78972 * 359.95813 * 13 12 11 34 34 H 1.08000 * 120.41652 * 179.97438 * 14 13 12 35 35 H 1.08001 * 119.61646 * 179.74436 * 15 14 13 36 36 H 1.07999 * 119.61902 * 179.74804 * 17 16 15 37 37 H 1.08997 * 109.46953 * 316.70450 * 18 10 9 38 38 H 1.08998 * 109.47000 * 76.71072 * 18 10 9 39 39 H 1.07998 * 119.86499 * 0.02562 * 20 19 18 40 40 H 1.08004 * 119.65146 * 180.26211 * 21 20 19 41 41 H 1.07997 * 120.02503 * 179.71861 * 22 21 20 42 42 H 1.08004 * 124.92116 * 180.02562 * 25 24 23 43 43 H 1.08000 * 126.90874 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1942 -0.0011 10 7 4.0011 -2.5749 -0.1111 11 6 5.4244 -2.6584 0.2425 12 6 5.5992 -2.3313 1.7031 13 6 5.5445 -3.3346 2.6588 14 6 5.7112 -2.9872 3.9905 15 6 5.9197 -1.6609 4.3195 16 7 5.9705 -0.7338 3.3834 17 6 5.8166 -1.0277 2.1070 18 6 3.7603 -3.1132 -1.4565 19 6 3.8848 -4.6148 -1.4264 20 6 4.9993 -5.2284 -1.9549 21 6 5.1176 -6.6101 -1.9236 22 6 4.1215 -7.3896 -1.3752 23 6 2.9872 -6.7914 -0.8418 24 8 1.8744 -7.2742 -0.2534 25 6 1.0476 -6.2753 0.1017 26 6 1.5793 -5.0931 -0.2376 27 6 2.8705 -5.3913 -0.8691 28 1 -0.4850 0.8401 0.0004 29 1 3.8752 -0.7525 0.9267 30 1 3.8746 -0.6114 -0.8477 31 1 5.9906 -1.9476 -0.3594 32 1 5.7879 -3.6678 0.0503 33 1 5.3757 -4.3622 2.3725 34 1 5.6741 -3.7426 4.7614 35 1 6.0463 -1.3815 5.3551 36 1 5.8606 -0.2406 1.3689 37 1 2.7576 -2.8382 -1.7838 38 1 4.4943 -2.7016 -2.1492 39 1 5.7859 -4.6310 -2.3915 40 1 5.9976 -7.0806 -2.3370 41 1 4.2229 -8.4647 -1.3607 42 1 0.0931 -6.4066 0.5897 43 1 1.1453 -4.1171 -0.0782 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236734805.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:01 Heat of formation + Delta-G solvation = 77.501831 kcal Electronic energy + Delta-G solvation = -26887.597443 eV Core-core repulsion = 23285.465412 eV Total energy + Delta-G solvation = -3602.132031 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.07913 -39.95650 -38.21098 -36.52777 -32.91525 -32.73290 -32.06421 -31.40009 -30.42437 -29.17930 -27.92805 -26.23670 -24.06572 -23.32254 -22.53222 -22.04814 -21.83146 -20.44228 -19.71811 -17.19984 -16.94592 -16.78668 -16.62764 -16.00807 -15.78052 -15.47670 -15.24664 -14.74441 -14.62992 -14.00837 -13.80200 -13.45309 -13.24185 -13.06042 -12.76873 -12.64387 -12.45941 -12.30890 -12.11919 -11.96809 -11.73423 -11.59933 -11.36063 -10.99495 -10.79899 -10.67582 -10.22886 -9.91463 -9.76878 -9.50017 -9.32599 -9.15699 -8.71841 -8.58732 -8.36210 -7.83109 -7.51047 -6.10284 -4.07149 1.15134 1.39078 1.57687 1.59886 2.78071 3.09649 3.25171 3.34394 3.36637 3.87962 4.08037 4.38408 4.70187 4.77661 4.85584 4.94761 5.04790 5.07420 5.15309 5.22705 5.26901 5.32222 5.35472 5.46339 5.57625 5.60675 5.70838 5.78488 5.84956 5.96753 5.99996 6.05969 6.27523 6.34525 6.37136 6.44725 6.50319 6.59058 6.66883 6.74931 6.84129 6.89776 6.96238 6.98142 7.46288 7.55565 7.76833 7.89724 8.24810 8.58960 8.98465 9.52089 11.02345 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.009231 B = 0.005494 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3032.450128 B = 5095.570622 C = 6689.809634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.071 3.929 3 Si 0.869 3.131 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.507 4.507 8 H 0.082 0.918 9 C 0.156 3.844 10 N -0.511 5.511 11 C 0.091 3.909 12 C -0.111 4.111 13 C -0.055 4.055 14 C -0.177 4.177 15 C 0.088 3.912 16 N -0.488 5.488 17 C 0.110 3.890 18 C 0.096 3.904 19 C -0.011 4.011 20 C -0.148 4.148 21 C -0.096 4.096 22 C -0.120 4.120 23 C 0.045 3.955 24 O -0.204 6.204 25 C -0.021 4.021 26 C -0.171 4.171 27 C -0.103 4.103 28 H 0.264 0.736 29 H 0.035 0.965 30 H -0.014 1.014 31 H 0.036 0.964 32 H 0.078 0.922 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.149 0.851 36 H 0.149 0.851 37 H 0.103 0.897 38 H 0.034 0.966 39 H 0.123 0.877 40 H 0.128 0.872 41 H 0.124 0.876 42 H 0.204 0.796 43 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.838 -11.987 0.178 16.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.131 4.131 3 Si 0.697 3.303 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.545 4.545 8 H 0.100 0.900 9 C 0.030 3.970 10 N -0.235 5.235 11 C -0.038 4.038 12 C -0.113 4.113 13 C -0.081 4.081 14 C -0.197 4.197 15 C -0.069 4.069 16 N -0.197 5.197 17 C -0.048 4.048 18 C -0.032 4.032 19 C -0.012 4.012 20 C -0.166 4.166 21 C -0.114 4.114 22 C -0.139 4.139 23 C -0.002 4.002 24 O -0.106 6.106 25 C -0.085 4.085 26 C -0.190 4.190 27 C -0.105 4.105 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.004 0.996 31 H 0.054 0.946 32 H 0.096 0.904 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.167 0.833 36 H 0.166 0.834 37 H 0.121 0.879 38 H 0.052 0.948 39 H 0.141 0.859 40 H 0.146 0.854 41 H 0.142 0.858 42 H 0.221 0.779 43 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 10.505 -11.528 0.794 15.617 hybrid contribution 0.441 0.762 -0.682 1.114 sum 10.946 -10.766 0.112 15.354 Atomic orbital electron populations 1.69873 1.06062 1.26867 1.50874 1.24863 0.94700 0.98720 0.94799 0.86947 0.80646 0.84323 0.78414 1.20343 1.21152 1.19045 1.20975 0.88506 0.94586 1.50479 0.89961 1.20348 0.97419 0.83576 0.95628 1.61967 1.12723 1.24019 1.24748 1.21014 0.91280 1.00859 0.90617 1.20750 0.99287 0.94352 0.96927 1.21389 0.94670 0.99710 0.92374 1.22058 1.02741 0.97928 0.96981 1.22642 0.96309 0.89222 0.98719 1.67645 1.13079 1.37391 1.01545 1.22645 0.94608 0.94861 0.92654 1.21019 1.03288 0.88758 0.90090 1.19495 0.91718 0.95791 0.94207 1.20907 0.98014 0.94512 1.03204 1.20761 0.97877 0.93491 0.99231 1.19749 0.91404 0.99800 1.02968 1.19676 0.88856 0.92427 0.99252 1.83957 1.26191 1.36193 1.64283 1.23902 0.96196 0.85324 1.03084 1.22908 0.94225 0.99915 1.01953 1.19739 0.96249 0.92139 1.02330 0.92653 0.94691 0.99614 0.94584 0.90406 0.85214 0.85269 0.83325 0.83398 0.87856 0.94764 0.85922 0.85403 0.85825 0.77938 0.81232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.59 13.96 55.43 0.77 -25.81 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 3 Si 0.87 21.18 27.38 -169.99 -4.65 16.53 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.28 6.68 56.52 0.38 -5.91 16 7 C -0.51 -13.56 8.85 -34.44 -0.30 -13.86 16 8 H 0.08 2.35 6.53 -52.49 -0.34 2.00 16 9 C 0.16 3.55 3.63 -4.97 -0.02 3.53 16 10 N -0.51 -9.81 4.39 -238.96 -1.05 -10.86 16 11 C 0.09 1.46 4.98 -4.98 -0.02 1.44 16 12 C -0.11 -1.84 4.94 -104.48 -0.52 -2.35 16 13 C -0.05 -0.83 9.86 -39.28 -0.39 -1.21 16 14 C -0.18 -2.41 10.11 -39.44 -0.40 -2.81 16 15 C 0.09 1.29 11.18 -17.55 -0.20 1.10 16 16 N -0.49 -8.56 10.36 -13.25 -0.14 -8.70 16 17 C 0.11 1.93 9.04 -17.55 -0.16 1.77 16 18 C 0.10 1.70 4.91 -4.97 -0.02 1.67 16 19 C -0.01 -0.18 4.73 -104.37 -0.49 -0.68 16 20 C -0.15 -1.94 8.93 -39.58 -0.35 -2.29 16 21 C -0.10 -1.12 10.01 -39.54 -0.40 -1.51 16 22 C -0.12 -1.56 10.06 -39.48 -0.40 -1.95 16 23 C 0.05 0.71 7.41 -38.48 -0.29 0.42 16 24 O -0.20 -3.16 10.58 3.86 0.04 -3.12 16 25 C -0.02 -0.31 11.96 29.24 0.35 0.04 16 26 C -0.17 -2.98 11.02 -37.62 -0.41 -3.39 16 27 C -0.10 -1.76 6.17 -105.16 -0.65 -2.41 16 28 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.04 0.83 4.56 -51.93 -0.24 0.59 16 30 H -0.01 -0.31 7.24 -51.93 -0.38 -0.69 16 31 H 0.04 0.55 8.07 -51.93 -0.42 0.13 16 32 H 0.08 1.14 6.67 -51.93 -0.35 0.79 16 33 H 0.13 1.80 8.06 -52.49 -0.42 1.37 16 34 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 35 H 0.15 1.70 8.06 -52.49 -0.42 1.28 16 36 H 0.15 2.55 7.74 -52.49 -0.41 2.14 16 37 H 0.10 2.10 7.08 -51.93 -0.37 1.73 16 38 H 0.03 0.55 7.85 -51.93 -0.41 0.14 16 39 H 0.12 1.37 8.00 -52.49 -0.42 0.95 16 40 H 0.13 1.09 8.06 -52.48 -0.42 0.66 16 41 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 42 H 0.20 2.18 8.06 -52.48 -0.42 1.75 16 43 H 0.17 3.33 6.60 -52.49 -0.35 2.98 16 LS Contribution 357.83 15.07 5.39 5.39 Total: -1.00 -31.47 357.83 -9.76 -41.24 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -5.37 Total: 5.97 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: -4.77 Total: -20.63 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: -0.41 Total: -45.37 kcal Atomic # 8 Polarization: -3.16 SS G_CDS: 0.04 Total: -3.12 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.65 Total: 16.53 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.47 -9.76 -41.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236734805.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.739 kcal (2) G-P(sol) polarization free energy of solvation -31.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds