Wall clock time and date at job start Tue Mar 31 2020 13:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00236 * 2 1 4 4 H 1.48497 * 109.47318 * 270.00324 * 3 2 1 5 5 H 1.48504 * 109.47017 * 30.00543 * 3 2 1 6 6 H 1.48503 * 109.46854 * 150.00090 * 3 2 1 7 7 C 1.37882 * 119.99671 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00302 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99973 * 179.97438 * 7 2 1 10 10 N 1.46903 * 109.47293 * 184.53266 * 9 7 2 11 11 C 1.46896 * 110.99716 * 195.20263 * 10 9 7 12 12 C 1.50697 * 109.47257 * 66.04918 * 11 10 9 13 13 C 1.38670 * 120.42301 * 89.99669 * 12 11 10 14 14 C 1.38627 * 118.42207 * 179.97438 * 13 12 11 15 15 C 1.38231 * 119.16058 * 0.25537 * 14 13 12 16 16 N 1.31849 * 120.76148 * 359.49353 * 15 14 13 17 17 C 1.31884 * 121.72873 * 0.49584 * 16 15 14 18 18 C 1.46902 * 110.99753 * 71.24590 * 10 9 7 19 19 C 1.50703 * 109.46661 * 196.70770 * 18 10 9 20 20 C 1.37766 * 120.19482 * 254.75006 * 19 18 10 21 21 C 1.38716 * 120.26691 * 179.76904 * 20 19 18 22 22 C 1.37856 * 120.69822 * 0.51662 * 21 20 19 23 23 C 1.38886 * 119.95731 * 359.74495 * 22 21 20 24 24 O 1.34826 * 133.42705 * 179.97438 * 23 22 21 25 25 C 1.34448 * 110.89971 * 179.97438 * 24 23 22 26 26 C 1.33986 * 110.15947 * 0.02562 * 25 24 23 27 27 C 1.39373 * 120.20279 * 75.03488 * 19 18 10 28 28 H 0.97006 * 119.99745 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47201 * 64.53239 * 9 7 2 30 30 H 1.09004 * 109.47374 * 304.53500 * 9 7 2 31 31 H 1.08997 * 109.47476 * 306.03883 * 11 10 9 32 32 H 1.09000 * 109.46704 * 186.04298 * 11 10 9 33 33 H 1.08002 * 120.78972 * 359.95813 * 13 12 11 34 34 H 1.08000 * 120.41652 * 179.97438 * 14 13 12 35 35 H 1.08001 * 119.61646 * 179.74436 * 15 14 13 36 36 H 1.07999 * 119.61902 * 179.74804 * 17 16 15 37 37 H 1.08997 * 109.46953 * 316.70450 * 18 10 9 38 38 H 1.08998 * 109.47000 * 76.71072 * 18 10 9 39 39 H 1.07998 * 119.86499 * 0.02562 * 20 19 18 40 40 H 1.08004 * 119.65146 * 180.26211 * 21 20 19 41 41 H 1.07997 * 120.02503 * 179.71861 * 22 21 20 42 42 H 1.08004 * 124.92116 * 180.02562 * 25 24 23 43 43 H 1.08000 * 126.90874 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1942 -0.0011 10 7 4.0011 -2.5749 -0.1111 11 6 5.4244 -2.6584 0.2425 12 6 5.5992 -2.3313 1.7031 13 6 5.5445 -3.3346 2.6588 14 6 5.7112 -2.9872 3.9905 15 6 5.9197 -1.6609 4.3195 16 7 5.9705 -0.7338 3.3834 17 6 5.8166 -1.0277 2.1070 18 6 3.7603 -3.1132 -1.4565 19 6 3.8848 -4.6148 -1.4264 20 6 4.9993 -5.2284 -1.9549 21 6 5.1176 -6.6101 -1.9236 22 6 4.1215 -7.3896 -1.3752 23 6 2.9872 -6.7914 -0.8418 24 8 1.8744 -7.2742 -0.2534 25 6 1.0476 -6.2753 0.1017 26 6 1.5793 -5.0931 -0.2376 27 6 2.8705 -5.3913 -0.8691 28 1 -0.4850 0.8401 0.0004 29 1 3.8752 -0.7525 0.9267 30 1 3.8746 -0.6114 -0.8477 31 1 5.9906 -1.9476 -0.3594 32 1 5.7879 -3.6678 0.0503 33 1 5.3757 -4.3622 2.3725 34 1 5.6741 -3.7426 4.7614 35 1 6.0463 -1.3815 5.3551 36 1 5.8606 -0.2406 1.3689 37 1 2.7576 -2.8382 -1.7838 38 1 4.4943 -2.7016 -2.1492 39 1 5.7859 -4.6310 -2.3915 40 1 5.9976 -7.0806 -2.3370 41 1 4.2229 -8.4647 -1.3607 42 1 0.0931 -6.4066 0.5897 43 1 1.1453 -4.1171 -0.0782 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236734805.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:00 Heat of formation + Delta-G solvation = 58.339817 kcal Electronic energy + Delta-G solvation = -26888.428370 eV Core-core repulsion = 23285.465412 eV Total energy + Delta-G solvation = -3602.962959 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.24886 -41.17343 -39.43444 -37.86501 -34.77078 -34.05434 -33.38135 -32.59556 -31.77264 -30.35631 -29.61568 -27.49839 -25.62043 -24.53291 -23.79769 -23.28095 -23.11360 -21.84390 -21.08339 -19.06525 -18.13054 -17.95469 -17.91016 -17.30613 -16.99355 -16.66414 -16.52697 -16.29191 -16.11860 -15.40620 -15.22006 -14.69203 -14.57359 -14.46789 -14.15239 -13.97397 -13.87438 -13.63612 -13.49900 -13.31641 -13.09390 -12.87082 -12.66103 -12.54313 -12.38688 -12.20352 -11.86470 -11.58372 -11.43224 -10.96446 -10.78424 -10.67310 -10.37409 -9.91476 -9.46850 -9.05548 -8.94620 -8.27751 -6.27865 0.03681 0.21280 0.40080 0.48407 1.28971 1.33332 1.41694 1.56718 1.97666 2.32071 2.71006 2.89615 3.06949 3.44491 3.55725 3.65779 3.83955 3.85792 3.94426 4.07597 4.12884 4.17327 4.28310 4.28553 4.41710 4.52062 4.56164 4.58816 4.67031 4.73872 4.79468 4.88407 4.88646 4.93529 5.05921 5.10229 5.21460 5.36127 5.41059 5.45028 5.55584 5.57456 5.71329 5.81185 5.82177 5.99773 6.29439 6.34325 6.63183 6.79993 7.04745 7.34654 8.88218 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.009231 B = 0.005494 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3032.450128 B = 5095.570622 C = 6689.809634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.014 3.986 3 Si 0.931 3.069 4 H -0.266 1.266 5 H -0.287 1.287 6 H -0.254 1.254 7 C -0.504 4.504 8 H 0.048 0.952 9 C 0.169 3.831 10 N -0.522 5.522 11 C 0.096 3.904 12 C -0.125 4.125 13 C -0.063 4.063 14 C -0.168 4.168 15 C 0.081 3.919 16 N -0.516 5.516 17 C 0.087 3.913 18 C 0.104 3.896 19 C -0.038 4.038 20 C -0.135 4.135 21 C -0.084 4.084 22 C -0.114 4.114 23 C 0.025 3.975 24 O -0.205 6.205 25 C 0.003 3.997 26 C -0.217 4.217 27 C -0.128 4.128 28 H 0.264 0.736 29 H 0.031 0.969 30 H -0.013 1.013 31 H 0.046 0.954 32 H 0.097 0.903 33 H 0.142 0.858 34 H 0.166 0.834 35 H 0.181 0.819 36 H 0.141 0.859 37 H 0.060 0.940 38 H 0.052 0.948 39 H 0.148 0.852 40 H 0.173 0.827 41 H 0.154 0.846 42 H 0.238 0.762 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.942 -14.112 0.392 19.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.184 4.184 3 Si 0.755 3.245 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.178 1.178 7 C -0.542 4.542 8 H 0.066 0.934 9 C 0.042 3.958 10 N -0.246 5.246 11 C -0.031 4.031 12 C -0.128 4.128 13 C -0.089 4.089 14 C -0.187 4.187 15 C -0.076 4.076 16 N -0.225 5.225 17 C -0.069 4.069 18 C -0.023 4.023 19 C -0.039 4.039 20 C -0.154 4.154 21 C -0.101 4.101 22 C -0.132 4.132 23 C -0.022 4.022 24 O -0.107 6.107 25 C -0.061 4.061 26 C -0.236 4.236 27 C -0.129 4.129 28 H 0.073 0.927 29 H 0.049 0.951 30 H 0.005 0.995 31 H 0.064 0.936 32 H 0.115 0.885 33 H 0.160 0.840 34 H 0.184 0.816 35 H 0.198 0.802 36 H 0.159 0.841 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.166 0.834 40 H 0.190 0.810 41 H 0.172 0.828 42 H 0.254 0.746 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 13.638 -13.671 0.993 19.336 hybrid contribution -0.516 1.260 -0.714 1.537 sum 13.122 -12.411 0.279 18.064 Atomic orbital electron populations 1.70025 1.07806 1.27683 1.53080 1.25671 0.95422 1.02386 0.94885 0.85956 0.79639 0.79856 0.79018 1.19099 1.21244 1.17803 1.21263 0.90921 0.93242 1.48794 0.93421 1.20033 0.94529 0.86009 0.95220 1.61816 1.15182 1.21539 1.26021 1.21037 0.89130 1.02216 0.90756 1.20831 1.00032 0.94489 0.97407 1.21661 0.94359 0.99984 0.92945 1.22453 1.00618 0.98405 0.97225 1.23247 0.95321 0.89433 0.99628 1.67624 1.14094 1.38839 1.01919 1.22638 0.96089 0.95239 0.92954 1.20839 1.01275 0.90653 0.89562 1.19414 0.93318 0.94345 0.96777 1.21234 0.97041 0.95737 1.01349 1.21257 0.98672 0.92607 0.97607 1.20264 0.90106 1.01586 1.01246 1.20101 0.89830 0.91872 1.00417 1.83960 1.26388 1.36049 1.64287 1.24403 0.96547 0.84254 1.00892 1.22681 0.96136 0.99349 1.05428 1.19929 0.96300 0.93495 1.03187 0.92710 0.95134 0.99541 0.93573 0.88491 0.84034 0.81628 0.80228 0.84146 0.92124 0.93031 0.83432 0.80968 0.82790 0.74553 0.85093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.87 13.96 21.45 0.30 -58.57 16 2 C 0.01 0.80 5.47 84.66 0.46 1.26 16 3 Si 0.93 44.83 27.38 68.60 1.88 46.71 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 5 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 6 H -0.25 -11.66 6.68 99.48 0.66 -10.99 16 7 C -0.50 -28.54 8.85 25.60 0.23 -28.32 16 8 H 0.05 2.98 6.53 -2.91 -0.02 2.96 16 9 C 0.17 7.91 3.63 85.56 0.31 8.22 16 10 N -0.52 -20.51 4.39 -909.94 -3.99 -24.50 16 11 C 0.10 3.02 4.98 85.56 0.43 3.45 16 12 C -0.13 -4.06 4.94 -19.77 -0.10 -4.16 16 13 C -0.06 -1.79 9.86 22.47 0.22 -1.57 16 14 C -0.17 -4.12 10.11 22.36 0.23 -3.90 16 15 C 0.08 2.20 11.18 84.69 0.95 3.15 16 16 N -0.52 -17.70 10.36 -195.84 -2.03 -19.73 16 17 C 0.09 3.05 9.04 84.67 0.77 3.82 16 18 C 0.10 3.81 4.91 85.56 0.42 4.23 16 19 C -0.04 -1.21 4.73 -19.70 -0.09 -1.30 16 20 C -0.14 -3.14 8.93 22.27 0.20 -2.94 16 21 C -0.08 -1.57 10.01 22.29 0.22 -1.35 16 22 C -0.11 -2.52 10.06 22.33 0.22 -2.30 16 23 C 0.02 0.74 7.41 22.98 0.17 0.91 16 24 O -0.20 -6.18 10.58 -9.09 -0.10 -6.27 16 25 C 0.00 0.09 11.96 66.85 0.80 0.89 16 26 C -0.22 -8.14 11.02 23.54 0.26 -7.88 16 27 C -0.13 -4.47 6.17 -20.21 -0.12 -4.59 16 28 H 0.26 15.51 8.31 -92.70 -0.77 14.74 16 29 H 0.03 1.48 4.56 -2.39 -0.01 1.47 16 30 H -0.01 -0.60 7.24 -2.38 -0.02 -0.62 16 31 H 0.05 1.35 8.07 -2.39 -0.02 1.33 16 32 H 0.10 2.64 6.67 -2.39 -0.02 2.62 16 33 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 34 H 0.17 2.80 8.06 -2.91 -0.02 2.78 16 35 H 0.18 3.59 8.06 -2.91 -0.02 3.56 16 36 H 0.14 4.91 7.74 -2.91 -0.02 4.89 16 37 H 0.06 2.70 7.08 -2.39 -0.02 2.68 16 38 H 0.05 1.65 7.85 -2.39 -0.02 1.63 16 39 H 0.15 2.67 8.00 -2.91 -0.02 2.64 16 40 H 0.17 1.77 8.06 -2.91 -0.02 1.75 16 41 H 0.15 2.47 8.06 -2.91 -0.02 2.44 16 42 H 0.24 5.00 8.06 -2.91 -0.02 4.98 16 43 H 0.13 5.90 6.60 -2.91 -0.02 5.88 16 Total: -1.00 -73.58 357.83 2.61 -70.97 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: 0.98 Total: 23.77 kcal Atomic # 6 Polarization: -37.94 SS G_CDS: 5.57 Total: -32.37 kcal Atomic # 7 Polarization: -97.08 SS G_CDS: -5.72 Total: -102.80 kcal Atomic # 8 Polarization: -6.18 SS G_CDS: -0.10 Total: -6.27 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.88 Total: 46.71 kcal Total: -73.58 2.61 -70.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236734805.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.308 kcal (2) G-P(sol) polarization free energy of solvation -73.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds