Wall clock time and date at job start Tue Mar 31 2020 13:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86802 * 120.00022 * 2 1 4 4 H 1.48497 * 109.47132 * 239.99697 * 3 2 1 5 5 H 1.48501 * 109.47182 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46855 * 119.99826 * 3 2 1 7 7 C 1.40106 * 120.00003 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00361 * 175.46375 * 7 2 1 9 9 C 1.40992 * 120.00301 * 355.45808 * 7 2 1 10 10 C 1.41310 * 120.55458 * 34.65382 * 9 7 2 11 11 C 1.36616 * 118.41509 * 179.97438 * 10 9 7 12 12 C 1.39913 * 119.46140 * 0.02562 * 11 10 9 13 13 C 1.47904 * 119.44587 * 179.97438 * 12 11 10 14 14 C 1.39733 * 119.99671 * 180.02562 * 13 12 11 15 15 C 1.37620 * 120.00385 * 179.97438 * 14 13 12 16 16 C 1.39745 * 119.99180 * 0.02562 * 15 14 13 17 17 C 1.47759 * 119.99496 * 179.97438 * 16 15 14 18 18 O 1.21564 * 120.00551 * 8.19787 * 17 16 15 19 19 N 1.34783 * 119.99928 * 188.20026 * 17 16 15 20 20 C 1.47024 * 125.64310 * 354.84916 * 19 17 16 21 21 C 1.54333 * 107.39708 * 178.98036 * 20 19 17 22 22 C 1.55153 * 102.94116 * 337.72748 * 21 20 19 23 23 C 1.47736 * 125.82212 * 174.74341 * 19 17 16 24 24 C 1.39741 * 120.00272 * 0.25334 * 16 15 14 25 25 C 1.37613 * 119.99480 * 359.46851 * 24 16 15 26 26 N 1.33051 * 121.10496 * 0.25134 * 12 11 10 27 27 C 1.31220 * 121.72659 * 359.47665 * 26 12 11 28 28 H 0.97003 * 119.99597 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.79159 * 359.95648 * 10 9 7 30 30 H 1.07997 * 120.26962 * 180.02562 * 11 10 9 31 31 H 1.08000 * 120.00373 * 359.97162 * 14 13 12 32 32 H 1.07995 * 120.00419 * 180.02562 * 15 14 13 33 33 H 1.09002 * 109.88712 * 59.48967 * 20 19 17 34 34 H 1.08998 * 109.88562 * 298.47369 * 20 19 17 35 35 H 1.09001 * 110.71900 * 96.09408 * 21 20 19 36 36 H 1.09001 * 110.71833 * 219.36760 * 21 20 19 37 37 H 1.09008 * 111.00182 * 153.57464 * 22 21 20 38 38 H 1.08996 * 111.00711 * 277.42455 * 22 21 20 39 39 H 1.09002 * 110.28564 * 85.25923 * 23 19 17 40 40 H 1.09004 * 110.47127 * 323.03294 * 23 19 17 41 41 H 1.07997 * 119.99803 * 179.74676 * 24 16 15 42 42 H 1.08006 * 119.99883 * 180.27746 * 25 24 16 43 43 H 1.07999 * 119.80204 * 180.24371 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0952 1.6964 -1.2124 5 1 1.2764 2.7465 -0.0006 6 1 3.0951 1.6964 1.2126 7 6 2.0079 -1.2134 0.0005 8 1 3.0854 -1.2149 -0.0734 9 6 1.3063 -2.4325 0.0978 10 6 0.0358 -2.5800 -0.5030 11 6 -0.6050 -3.7805 -0.3821 12 6 0.0081 -4.8195 0.3266 13 6 -0.6862 -6.1188 0.4578 14 6 -0.0848 -7.1642 1.1634 15 6 -0.7309 -8.3731 1.2861 16 6 -1.9884 -8.5552 0.7043 17 6 -2.6820 -9.8533 0.8355 18 8 -2.2325 -10.7112 1.5701 19 7 -3.8131 -10.0862 0.1406 20 6 -4.5218 -9.1066 -0.6960 21 6 -5.7416 -9.8232 -1.3127 22 6 -5.3375 -11.3195 -1.2430 23 6 -4.5480 -11.3668 0.0889 24 6 -2.5873 -7.5116 -0.0063 25 6 -1.9436 -6.3011 -0.1240 26 7 1.2028 -4.6565 0.8890 27 6 1.8604 -3.5248 0.7965 28 1 -0.4850 0.8401 -0.0004 29 1 -0.4179 -1.7632 -1.0446 30 1 -1.5769 -3.9263 -0.8298 31 1 0.8873 -7.0236 1.6126 32 1 -0.2662 -9.1809 1.8318 33 1 -3.8628 -8.7492 -1.4873 34 1 -4.8546 -8.2683 -0.0841 35 1 -6.6378 -9.6377 -0.7206 36 1 -5.8899 -9.5116 -2.3466 37 1 -6.2182 -11.9604 -1.1980 38 1 -4.7007 -11.5919 -2.0846 39 1 -5.2329 -11.4438 0.9334 40 1 -3.8522 -12.2058 0.0880 41 1 -3.5573 -7.6538 -0.4593 42 1 -2.4084 -5.4930 -0.6694 43 1 2.8302 -3.4279 1.2620 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239893580.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:26 Heat of formation + Delta-G solvation = 34.492782 kcal Electronic energy + Delta-G solvation = -25286.956055 eV Core-core repulsion = 21682.959011 eV Total energy + Delta-G solvation = -3603.997044 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.44320 -38.93490 -37.79209 -37.19611 -34.33675 -32.50408 -31.49858 -31.08000 -30.48355 -29.43722 -28.81151 -26.01278 -24.47637 -22.91977 -22.63182 -21.64003 -20.84521 -20.61442 -19.79284 -17.62275 -17.22572 -16.73632 -16.41894 -15.76550 -15.55993 -14.82581 -14.56962 -14.29837 -14.07561 -13.88442 -13.62077 -13.48537 -13.29948 -13.05794 -12.92038 -12.83158 -12.51935 -12.06188 -11.99675 -11.87384 -11.55587 -11.47886 -11.42400 -11.29458 -11.09210 -10.96894 -10.72265 -10.39146 -10.05392 -9.79207 -9.58481 -8.89223 -8.75246 -8.58265 -8.43684 -8.23838 -7.32047 -6.97392 -4.70084 1.00861 1.81852 2.41647 2.86208 2.87803 2.90577 2.92037 2.94328 3.27677 3.70818 4.16970 4.19361 4.24251 4.54306 4.60176 4.78810 4.93401 5.01029 5.15789 5.26547 5.28737 5.36793 5.40364 5.47727 5.50304 5.54553 5.63435 5.77646 5.81131 5.82621 5.96083 6.09536 6.19748 6.38131 6.48601 6.58989 6.60827 6.70070 6.78909 6.89353 7.06754 7.17451 7.28882 7.42927 7.56730 7.67896 7.80563 8.21326 8.22873 8.45191 8.50254 9.38993 9.88583 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.029150 B = 0.002303 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.320765 B =12154.604163 C =12979.610104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.067 3.933 3 Si 0.924 3.076 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.435 4.435 8 H 0.086 0.914 9 C 0.067 3.933 10 C -0.135 4.135 11 C -0.122 4.122 12 C -0.009 4.009 13 C 0.050 3.950 14 C -0.125 4.125 15 C -0.055 4.055 16 C -0.173 4.173 17 C 0.581 3.419 18 O -0.547 6.547 19 N -0.620 5.620 20 C 0.089 3.911 21 C -0.136 4.136 22 C -0.134 4.134 23 C 0.106 3.894 24 C -0.117 4.117 25 C -0.146 4.146 26 N -0.449 5.449 27 C -0.005 4.005 28 H 0.286 0.714 29 H 0.137 0.863 30 H 0.104 0.896 31 H 0.135 0.865 32 H 0.127 0.873 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.151 0.849 42 H 0.126 0.874 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.965 -11.387 -4.474 16.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.152 4.152 3 Si 0.748 3.252 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.465 4.465 8 H 0.104 0.896 9 C 0.063 3.937 10 C -0.160 4.160 11 C -0.142 4.142 12 C -0.141 4.141 13 C 0.049 3.951 14 C -0.144 4.144 15 C -0.074 4.074 16 C -0.177 4.177 17 C 0.374 3.626 18 O -0.425 6.425 19 N -0.355 5.355 20 C -0.033 4.033 21 C -0.174 4.174 22 C -0.172 4.172 23 C -0.016 4.016 24 C -0.135 4.135 25 C -0.165 4.165 26 N -0.157 5.157 27 C -0.170 4.170 28 H 0.097 0.903 29 H 0.155 0.845 30 H 0.122 0.878 31 H 0.153 0.847 32 H 0.145 0.855 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.168 0.832 42 H 0.144 0.856 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.522 -12.354 -3.585 16.619 hybrid contribution -0.103 1.704 -0.404 1.754 sum -10.625 -10.650 -3.989 15.563 Atomic orbital electron populations 1.69675 1.07691 1.29942 1.34295 1.26091 0.95072 1.01894 0.92099 0.86086 0.79833 0.79069 0.80225 1.18624 1.20079 1.18618 1.19631 0.95318 0.89906 1.41620 0.89598 1.18706 0.93012 0.93344 0.88675 1.21608 0.97173 0.96079 1.01109 1.21402 0.99000 0.94293 0.99543 1.18863 0.94170 0.93157 1.07959 1.18986 0.92031 0.92194 0.91888 1.21253 1.01041 0.91849 1.00219 1.21098 0.92917 0.97235 0.96158 1.19553 0.97572 0.93727 1.06812 1.18150 0.78479 0.87456 0.78553 1.90735 1.65940 1.47395 1.38454 1.48399 1.25404 1.12943 1.48776 1.22569 0.93763 0.92344 0.94635 1.22741 0.97515 0.95246 1.01891 1.22793 1.00325 0.96712 0.97384 1.22249 0.95105 0.86841 0.97408 1.22389 1.00998 0.92678 0.97386 1.21163 0.95374 0.97406 1.02562 1.66951 1.06726 1.25158 1.16850 1.22645 1.00742 0.90175 1.03473 0.90257 0.84536 0.87821 0.84666 0.85536 0.90021 0.90193 0.90388 0.89726 0.89767 0.90486 0.91522 0.90435 0.83192 0.85574 0.85005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.68 10.63 55.56 0.59 -18.09 16 2 C 0.07 1.53 5.43 -17.32 -0.09 1.44 16 3 Si 0.92 17.09 29.56 -169.99 -5.03 12.06 16 4 H -0.26 -4.77 7.11 56.52 0.40 -4.36 16 5 H -0.28 -5.00 7.11 56.52 0.40 -4.60 16 6 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 7 C -0.44 -10.47 9.05 -37.84 -0.34 -10.81 16 8 H 0.09 1.94 7.85 -52.48 -0.41 1.53 16 9 C 0.07 1.67 5.56 -106.64 -0.59 1.08 16 10 C -0.13 -3.25 8.72 -39.00 -0.34 -3.59 16 11 C -0.12 -2.70 9.38 -39.54 -0.37 -3.07 16 12 C -0.01 -0.19 6.74 -82.75 -0.56 -0.75 16 13 C 0.05 0.98 5.88 -104.82 -0.62 0.37 16 14 C -0.12 -2.33 9.55 -39.25 -0.37 -2.70 16 15 C -0.06 -0.95 9.57 -39.24 -0.38 -1.33 16 16 C -0.17 -2.80 5.88 -104.88 -0.62 -3.42 16 17 C 0.58 9.24 7.81 -12.37 -0.10 9.14 16 18 O -0.55 -10.32 16.68 5.31 0.09 -10.23 16 19 N -0.62 -7.48 3.34 -175.86 -0.59 -8.07 16 20 C 0.09 0.78 4.86 -3.06 -0.01 0.76 16 21 C -0.14 -0.81 6.95 -24.89 -0.17 -0.98 16 22 C -0.13 -0.84 7.09 -24.59 -0.17 -1.02 16 23 C 0.11 1.01 6.91 -2.36 -0.02 1.00 16 24 C -0.12 -1.69 8.57 -39.25 -0.34 -2.02 16 25 C -0.15 -2.40 9.40 -39.25 -0.37 -2.77 16 26 N -0.45 -10.63 9.37 -9.10 -0.09 -10.71 16 27 C 0.00 -0.11 10.97 -16.76 -0.18 -0.29 16 28 H 0.29 6.15 8.29 -40.82 -0.34 5.81 16 29 H 0.14 3.34 6.21 -52.49 -0.33 3.02 16 30 H 0.10 1.97 6.13 -52.49 -0.32 1.65 16 31 H 0.14 2.56 7.51 -52.49 -0.39 2.16 16 32 H 0.13 2.09 7.66 -52.49 -0.40 1.68 16 33 H 0.08 0.70 6.67 -51.93 -0.35 0.35 16 34 H 0.08 0.67 6.78 -51.93 -0.35 0.32 16 35 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.38 8.14 -51.92 -0.42 -0.04 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 41 H 0.15 1.65 2.74 -58.27 -0.16 1.49 16 42 H 0.13 1.87 6.13 -52.48 -0.32 1.55 16 43 H 0.13 2.87 8.06 -52.49 -0.42 2.45 16 LS Contribution 352.08 15.07 5.31 5.31 Total: -1.00 -29.07 352.08 -10.49 -39.56 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -5.13 Total: 9.14 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: -5.65 Total: -18.96 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: -0.08 Total: -36.88 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.23 kcal Atomic # 14 Polarization: 17.09 SS G_CDS: -5.03 Total: 12.06 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.07 -10.49 -39.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239893580.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.053 kcal (2) G-P(sol) polarization free energy of solvation -29.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds