Wall clock time and date at job start Tue Mar 31 2020 13:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86802 * 120.00022 * 2 1 4 4 H 1.48497 * 109.47132 * 239.99697 * 3 2 1 5 5 H 1.48501 * 109.47182 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46855 * 119.99826 * 3 2 1 7 7 C 1.40106 * 120.00003 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00361 * 175.46375 * 7 2 1 9 9 C 1.40992 * 120.00301 * 355.45808 * 7 2 1 10 10 C 1.41310 * 120.55458 * 34.65382 * 9 7 2 11 11 C 1.36616 * 118.41509 * 179.97438 * 10 9 7 12 12 C 1.39913 * 119.46140 * 0.02562 * 11 10 9 13 13 C 1.47904 * 119.44587 * 179.97438 * 12 11 10 14 14 C 1.39733 * 119.99671 * 180.02562 * 13 12 11 15 15 C 1.37620 * 120.00385 * 179.97438 * 14 13 12 16 16 C 1.39745 * 119.99180 * 0.02562 * 15 14 13 17 17 C 1.47759 * 119.99496 * 179.97438 * 16 15 14 18 18 O 1.21564 * 120.00551 * 8.19787 * 17 16 15 19 19 N 1.34783 * 119.99928 * 188.20026 * 17 16 15 20 20 C 1.47024 * 125.64310 * 354.84916 * 19 17 16 21 21 C 1.54333 * 107.39708 * 178.98036 * 20 19 17 22 22 C 1.55153 * 102.94116 * 337.72748 * 21 20 19 23 23 C 1.47736 * 125.82212 * 174.74341 * 19 17 16 24 24 C 1.39741 * 120.00272 * 0.25334 * 16 15 14 25 25 C 1.37613 * 119.99480 * 359.46851 * 24 16 15 26 26 N 1.33051 * 121.10496 * 0.25134 * 12 11 10 27 27 C 1.31220 * 121.72659 * 359.47665 * 26 12 11 28 28 H 0.97003 * 119.99597 * 0.02562 * 1 2 3 29 29 H 1.07999 * 120.79159 * 359.95648 * 10 9 7 30 30 H 1.07997 * 120.26962 * 180.02562 * 11 10 9 31 31 H 1.08000 * 120.00373 * 359.97162 * 14 13 12 32 32 H 1.07995 * 120.00419 * 180.02562 * 15 14 13 33 33 H 1.09002 * 109.88712 * 59.48967 * 20 19 17 34 34 H 1.08998 * 109.88562 * 298.47369 * 20 19 17 35 35 H 1.09001 * 110.71900 * 96.09408 * 21 20 19 36 36 H 1.09001 * 110.71833 * 219.36760 * 21 20 19 37 37 H 1.09008 * 111.00182 * 153.57464 * 22 21 20 38 38 H 1.08996 * 111.00711 * 277.42455 * 22 21 20 39 39 H 1.09002 * 110.28564 * 85.25923 * 23 19 17 40 40 H 1.09004 * 110.47127 * 323.03294 * 23 19 17 41 41 H 1.07997 * 119.99803 * 179.74676 * 24 16 15 42 42 H 1.08006 * 119.99883 * 180.27746 * 25 24 16 43 43 H 1.07999 * 119.80204 * 180.24371 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0952 1.6964 -1.2124 5 1 1.2764 2.7465 -0.0006 6 1 3.0951 1.6964 1.2126 7 6 2.0079 -1.2134 0.0005 8 1 3.0854 -1.2149 -0.0734 9 6 1.3063 -2.4325 0.0978 10 6 0.0358 -2.5800 -0.5030 11 6 -0.6050 -3.7805 -0.3821 12 6 0.0081 -4.8195 0.3266 13 6 -0.6862 -6.1188 0.4578 14 6 -0.0848 -7.1642 1.1634 15 6 -0.7309 -8.3731 1.2861 16 6 -1.9884 -8.5552 0.7043 17 6 -2.6820 -9.8533 0.8355 18 8 -2.2325 -10.7112 1.5701 19 7 -3.8131 -10.0862 0.1406 20 6 -4.5218 -9.1066 -0.6960 21 6 -5.7416 -9.8232 -1.3127 22 6 -5.3375 -11.3195 -1.2430 23 6 -4.5480 -11.3668 0.0889 24 6 -2.5873 -7.5116 -0.0063 25 6 -1.9436 -6.3011 -0.1240 26 7 1.2028 -4.6565 0.8890 27 6 1.8604 -3.5248 0.7965 28 1 -0.4850 0.8401 -0.0004 29 1 -0.4179 -1.7632 -1.0446 30 1 -1.5769 -3.9263 -0.8298 31 1 0.8873 -7.0236 1.6126 32 1 -0.2662 -9.1809 1.8318 33 1 -3.8628 -8.7492 -1.4873 34 1 -4.8546 -8.2683 -0.0841 35 1 -6.6378 -9.6377 -0.7206 36 1 -5.8899 -9.5116 -2.3466 37 1 -6.2182 -11.9604 -1.1980 38 1 -4.7007 -11.5919 -2.0846 39 1 -5.2329 -11.4438 0.9334 40 1 -3.8522 -12.2058 0.0880 41 1 -3.5573 -7.6538 -0.4593 42 1 -2.4084 -5.4930 -0.6694 43 1 2.8302 -3.4279 1.2620 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239893580.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:25 Heat of formation + Delta-G solvation = 19.731147 kcal Electronic energy + Delta-G solvation = -25287.596167 eV Core-core repulsion = 21682.959011 eV Total energy + Delta-G solvation = -3604.637156 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.56885 -40.51786 -39.09727 -38.34412 -36.04718 -33.74602 -32.93034 -32.56310 -31.77682 -30.83895 -29.80072 -27.58974 -25.68348 -24.38846 -23.97458 -22.81956 -22.13778 -21.87169 -20.90665 -19.36746 -18.37902 -17.97114 -17.51769 -17.21715 -16.95848 -16.45202 -15.80335 -15.48301 -15.42997 -15.10603 -14.87402 -14.66643 -14.51628 -14.41391 -14.08428 -13.98233 -13.65567 -13.60660 -13.45957 -13.22278 -13.04916 -12.89921 -12.63133 -12.29661 -12.23693 -12.10764 -11.79652 -11.58769 -11.39821 -11.26041 -11.02744 -10.39254 -10.24391 -10.02521 -9.96799 -9.72012 -8.99913 -8.67346 -6.51146 -0.41254 0.47574 0.78123 1.06672 1.39966 1.48737 1.52232 1.86759 1.92148 2.17150 2.65566 2.98591 3.40529 3.58368 3.67040 3.70898 3.78693 3.95137 4.05896 4.09857 4.25972 4.28186 4.38785 4.44984 4.51820 4.59071 4.69513 4.78191 4.84141 4.84827 4.92744 4.96325 5.01458 5.09792 5.13773 5.16047 5.24138 5.26253 5.32063 5.36056 5.46317 5.65956 5.73674 5.89759 5.98663 6.01655 6.38244 6.43390 6.68701 6.71204 7.03373 7.59188 8.21550 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.029150 B = 0.002303 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.320765 B =12154.604163 C =12979.610104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.029 3.971 3 Si 0.995 3.005 4 H -0.256 1.256 5 H -0.267 1.267 6 H -0.261 1.261 7 C -0.468 4.468 8 H 0.089 0.911 9 C 0.040 3.960 10 C -0.150 4.150 11 C -0.124 4.124 12 C -0.010 4.010 13 C 0.018 3.982 14 C -0.130 4.130 15 C -0.064 4.064 16 C -0.169 4.169 17 C 0.573 3.427 18 O -0.587 6.587 19 N -0.616 5.616 20 C 0.072 3.928 21 C -0.126 4.126 22 C -0.124 4.124 23 C 0.095 3.905 24 C -0.101 4.101 25 C -0.136 4.136 26 N -0.466 5.466 27 C -0.025 4.025 28 H 0.293 0.707 29 H 0.129 0.871 30 H 0.137 0.863 31 H 0.122 0.878 32 H 0.127 0.873 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.193 0.807 42 H 0.148 0.852 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.880 -11.800 -5.967 19.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.186 4.186 3 Si 0.815 3.185 4 H -0.180 1.180 5 H -0.192 1.192 6 H -0.185 1.185 7 C -0.497 4.497 8 H 0.107 0.893 9 C 0.036 3.964 10 C -0.176 4.176 11 C -0.144 4.144 12 C -0.144 4.144 13 C 0.017 3.983 14 C -0.149 4.149 15 C -0.083 4.083 16 C -0.172 4.172 17 C 0.365 3.635 18 O -0.470 6.470 19 N -0.348 5.348 20 C -0.049 4.049 21 C -0.163 4.163 22 C -0.162 4.162 23 C -0.026 4.026 24 C -0.118 4.118 25 C -0.155 4.155 26 N -0.173 5.173 27 C -0.189 4.189 28 H 0.104 0.896 29 H 0.147 0.853 30 H 0.155 0.845 31 H 0.140 0.860 32 H 0.145 0.855 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.209 0.791 42 H 0.166 0.834 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -13.464 -12.775 -5.105 19.250 hybrid contribution 0.610 1.521 0.059 1.639 sum -12.854 -11.255 -5.046 17.815 Atomic orbital electron populations 1.69719 1.08947 1.31145 1.34820 1.26939 0.95834 1.04782 0.91069 0.85033 0.78509 0.74747 0.80201 1.18001 1.19151 1.18539 1.19867 0.95694 0.90616 1.43517 0.89310 1.19002 0.93862 0.94068 0.89510 1.21658 0.97471 0.96763 1.01696 1.21685 1.00155 0.93337 0.99184 1.19413 0.93753 0.94510 1.06726 1.19052 0.93720 0.91178 0.94320 1.21165 1.00808 0.92425 1.00506 1.21128 0.93772 0.96698 0.96734 1.19824 0.96998 0.94618 1.05766 1.18113 0.79599 0.86845 0.78945 1.90714 1.67421 1.48363 1.40477 1.48506 1.24107 1.14796 1.47392 1.22892 0.94963 0.92447 0.94627 1.22755 0.96333 0.94100 1.03133 1.22794 1.00618 0.97721 0.95069 1.22513 0.94991 0.85230 0.99884 1.22853 1.02114 0.90953 0.95885 1.21427 0.93945 0.98698 1.01425 1.66997 1.07637 1.25174 1.17526 1.22833 1.01441 0.90441 1.04139 0.89571 0.85296 0.84533 0.85984 0.85538 0.89262 0.89113 0.89072 0.87540 0.87385 0.90412 0.90905 0.91941 0.79068 0.83402 0.84191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -39.38 10.63 21.85 0.23 -39.14 16 2 C 0.03 1.36 5.43 85.31 0.46 1.82 16 3 Si 1.00 35.02 29.56 68.60 2.03 37.05 16 4 H -0.26 -8.69 7.11 99.48 0.71 -7.98 16 5 H -0.27 -8.92 7.11 99.48 0.71 -8.22 16 6 H -0.26 -9.08 7.11 99.48 0.71 -8.37 16 7 C -0.47 -23.27 9.05 23.40 0.21 -23.06 16 8 H 0.09 4.17 7.85 -2.91 -0.02 4.15 16 9 C 0.04 2.07 5.56 -21.17 -0.12 1.95 16 10 C -0.15 -7.44 8.72 22.65 0.20 -7.24 16 11 C -0.12 -5.46 9.38 22.30 0.21 -5.25 16 12 C -0.01 -0.44 6.74 41.93 0.28 -0.16 16 13 C 0.02 0.71 5.88 -19.99 -0.12 0.60 16 14 C -0.13 -4.93 9.55 22.49 0.21 -4.72 16 15 C -0.06 -2.23 9.57 22.49 0.22 -2.01 16 16 C -0.17 -5.20 5.88 -20.03 -0.12 -5.32 16 17 C 0.57 17.52 7.81 86.76 0.68 18.19 16 18 O -0.59 -22.24 16.68 -3.92 -0.07 -22.30 16 19 N -0.62 -13.27 3.34 -828.58 -2.77 -16.03 16 20 C 0.07 0.94 4.86 86.73 0.42 1.36 16 21 C -0.13 -0.86 6.95 31.78 0.22 -0.64 16 22 C -0.12 -1.06 7.09 31.98 0.23 -0.84 16 23 C 0.10 1.59 6.91 86.79 0.60 2.19 16 24 C -0.10 -2.59 8.57 22.49 0.19 -2.40 16 25 C -0.14 -4.13 9.40 22.48 0.21 -3.92 16 26 N -0.47 -22.79 9.37 -182.71 -1.71 -24.50 16 27 C -0.02 -1.22 10.97 85.46 0.94 -0.28 16 28 H 0.29 12.67 8.29 -92.71 -0.77 11.90 16 29 H 0.13 6.49 6.21 -2.91 -0.02 6.47 16 30 H 0.14 4.93 6.13 -2.91 -0.02 4.91 16 31 H 0.12 4.85 7.51 -2.91 -0.02 4.83 16 32 H 0.13 4.30 7.66 -2.91 -0.02 4.28 16 33 H 0.09 1.09 6.67 -2.39 -0.02 1.08 16 34 H 0.09 1.06 6.78 -2.39 -0.02 1.04 16 35 H 0.09 0.45 8.14 -2.39 -0.02 0.44 16 36 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 37 H 0.11 0.48 8.14 -2.38 -0.02 0.46 16 38 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.06 1.23 8.10 -2.39 -0.02 1.22 16 41 H 0.19 3.29 2.74 -8.34 -0.02 3.27 16 42 H 0.15 3.83 6.13 -2.91 -0.02 3.81 16 43 H 0.14 6.45 8.06 -2.91 -0.02 6.42 16 Total: -1.00 -66.48 352.08 3.68 -62.80 By element: Atomic # 1 Polarization: 30.80 SS G_CDS: 1.04 Total: 31.84 kcal Atomic # 6 Polarization: -34.64 SS G_CDS: 4.93 Total: -29.71 kcal Atomic # 7 Polarization: -75.43 SS G_CDS: -4.25 Total: -79.68 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: -0.07 Total: -22.30 kcal Atomic # 14 Polarization: 35.02 SS G_CDS: 2.03 Total: 37.05 kcal Total: -66.48 3.68 -62.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239893580.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.530 kcal (2) G-P(sol) polarization free energy of solvation -66.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds